Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0002462

Physical Location & Seq

Genomic Coordinates Forward (+)

596490 .. 601641

Gene Structure 5152 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0003900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGGAGGAGTATCTGCAGTACATGAAGACATTGCGCTCTCAAATGAACGATGTGGAGGATCAAGCAGCGAAGGTCTTAGTGGAGGAGCAAATGCAATTAACCACCATCCAGACCTTGAACAACGATCTCAATTCTGCAATATCCGAAACAAAACGATTCATGGAAGACATTGAGCAGATGAAGAATGCTAAGGGTCAAATATGCTCACAGATTCTGGAAAGACAGAGAAAGATAGTTTGTTTGGAGTCAGATTCATCCACCCTTATCCAGACTCTGGAGCTTATTGAACAAGAAAGGATCAACTTGGCTGCCAAGCTTATTGAGAAGAGCACTTACTACTTGAAAGTGTCAGGTGATATTAATGCCAAATTGCAGGAACAACAGGATTGGATTAATTGTCACCAGACTACTACAGAACATGGAGAACCTGGAATGGTTAAGGATACAATTGATGAGCAAAGAGTTGATATTCAAGGGAAGGCTAGCATTGGTGACCACCTCTGCATGGATGATCAGGACAATGACGCAAGAAAGAACCTAATGGCGATGGTTGACTCTGCTAAAGTCAAGCTTGATGAGATTCTACGAATGAAATCTGAACTTGTCGGGGAGAATTACAAGACGAAGCAGGGTATTGAGCAACTAAATTGCAGGGAAAGTGATTTTAAGCCAGAGCTAAGGGCATTGGACATAAAGACCTTGGAGGACGAATACAATGCTCTTTTATCAGATAAAGCTGGAGAAACTGAATACTTGAAGTCTCTGCAGGACCAAATTGAGAAAATGAAGGGTATATCTCATGTGCTTAAATGTGCTTGCGGAGAGGAATACAAAGTAGAACTGGACTCGTGTGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0007275 GO:0007338 GO:0008150 GO:0008324 GO:0009555 GO:0009566 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0019953 GO:0022414 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0032501 GO:0032502 GO:0034220 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0044703 GO:0046873 GO:0048229 GO:0048856 GO:0051179 GO:0051234 GO:0051704 GO:0055085 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0098655 GO:0098660 GO:0098662 GO:0099131 GO:0099132

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CaATP_NAI Cation_ATPase Cation_ATPase_C Cation_ATPase_N E1-E2_ATPase Hydrolase

Protein Analysis

285

Amino Acids

32.69

Weight (kDa)

4.72

Isoelectric Point (pI)

50.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002462)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19360 AT1G19360 AT1G75110
fragaria_vesca	FvH4_2g08270 FvH4_2g08270 FvH4_2g08270 FvH4_2g08270 FvH4_2g40081
malus_domestica	MD08G1032600.v1.1 MD10G1080700.v1.1 MD15G1029300.v1.1
prunus_persica	Prupe.1G382100_v2.0.a1 Prupe.8G102000_v2.0.a1
pyrus_communis	pycom05g06040 pycom08g02590 pycom10g06390 pycom15g02600
rosa_chinensis	RchiOBHm_Chr6g0263151 RchiOBHm_Chr6g0300661
rosa_laevigata	RLG00000011313 RLG00000014368
rosa_multiflora	Rmu_co8387041.1_g000001 Rmu_sc0004226.1_g000014 Rmu_sc0014374.1_g000002 Rmu_sc0015149.1_g000002
rosa_roxburghii	Rroxscaffold_176G00430950 Rroxscaffold_7G00167540 Rroxscaffold_7G00204620
rosa_rugosa	Rorug06G0003900 Rorug06G0298200
rosa_samantha	Rh6AG123000 Rh6AG410900 Rh6BG118000 Rh6BG418100 Rh6CG116200 Rh6CG425600 Rh6DG104700 Rh6DG411000
rosa_wichuraiana	Rw0G002190 Rw6G010570 Rw6G035950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	274
AciI	CCGC	1 cut(s)	819
AclWI	GGATC	2 cut(s)	66, 305
AfaI	GTAC	1 cut(s)	20
AfiI	CCNNNNNNNGG	2 cut(s)	274, 505
AgsI	TTSAA	5 cut(s)	118, 287, 343, 473, 757
AjnI	CCWGG	1 cut(s)	427
AluBI	AGCT	5 cut(s)	280, 316, 571, 676, 737
AluI	AGCT	5 cut(s)	280, 316, 571, 676, 737
Alw21I	GWGCWC	1 cut(s)	332
Alw26I	GTCTC	1 cut(s)	765
AlwI	GGATC	2 cut(s)	66, 305
AlwNI	CAGNNNCTG	2 cut(s)	214, 274
ApeKI	GCWGC	2 cut(s)	65, 308
AseI	ATTAAT	2 cut(s)	360, 393
AspLEI	GCGC	1 cut(s)	36
AspS9I	GGNCC	1 cut(s)	769
AsuHPI	GGTGA	3 cut(s)	365, 392, 503
AsuNHI	GCTAGC	1 cut(s)	482
AvaII	GGWCC	1 cut(s)	769
BarI	GAAGNNNNNNTAC	2 cut(s)	317, 349
BauI	CACGAG	1 cut(s)	847
BbsI	GAAGAC	2 cut(s)	32, 171
Bbv12I	GWGCWC	1 cut(s)	332
BbvI	GCAGC	2 cut(s)	77, 295
BccI	CCATC	2 cut(s)	113, 541
BcgI	CGANNNNNNTGC	2 cut(s)	698, 732
BciT130I	CCWGG	1 cut(s)	429
BciVI	GTATCC	1 cut(s)	436
BclI	TGATCA	1 cut(s)	511
BcoDI	GTCTC	1 cut(s)	765
BfaI	CTAG	1 cut(s)	483
BfmI	CTRYAG	3 cut(s)	14, 411, 764
BfuI	GTATCC	1 cut(s)	436
BisI	GCNGC	2 cut(s)	66, 309
BlsI	GCNGC	2 cut(s)	67, 310
Bme1390I	CCNGG	1 cut(s)	429
Bme18I	GGWCC	1 cut(s)	769
BmgT120I	GGNCC	1 cut(s)	769
BmrFI	CCNGG	1 cut(s)	429
BmtI	GCTAGC	1 cut(s)	486
BpiI	GAAGAC	2 cut(s)	32, 171
BpmI	CTGGAG	2 cut(s)	296, 759
Bpu10I	CCTNAGC	2 cut(s)	189, 677
BsaJI	CCNNGG	1 cut(s)	699
Bsc4I	CCNNNNNNNGG	2 cut(s)	274, 505
Bse1I	ACTGG	1 cut(s)	846
Bse3DI	GCAATG	1 cut(s)	29
BseBI	CCWGG	1 cut(s)	429
BseDI	CCNNGG	1 cut(s)	699
BseGI	GGATG	3 cut(s)	105, 254, 514
BseLI	CCNNNNNNNGG	2 cut(s)	274, 505
BseMI	GCAATG	1 cut(s)	29
BseNI	ACTGG	1 cut(s)	846
BseRI	GAGGAG	2 cut(s)	20, 98
BseXI	GCAGC	2 cut(s)	77, 295
BsiHKAI	GWGCWC	1 cut(s)	332
BslI	CCNNNNNNNGG	2 cut(s)	274, 505
BsmAI	GTCTC	1 cut(s)	765
BsmI	GAATGC	1 cut(s)	190
Bsp1286I	GDGCHC	1 cut(s)	332
Bsp143I	GATC	4 cut(s)	58, 124, 297, 511
BspACI	CCGC	1 cut(s)	819
BspMAI	CTGCAG	2 cut(s)	18, 768
BspOI	GCTAGC	1 cut(s)	486
BspPI	GGATC	2 cut(s)	66, 305
BspQI	GCTCTTC	1 cut(s)	320
BsrDI	GCAATG	1 cut(s)	29
BsrI	ACTGG	1 cut(s)	846
BssECI	CCNNGG	1 cut(s)	699
BssMI	GATC	4 cut(s)	58, 124, 297, 511
BssSI	CACGAG	1 cut(s)	847
BssT1I	CCWWGG	1 cut(s)	699
Bst2BI	CACGAG	1 cut(s)	847
Bst2UI	CCWGG	1 cut(s)	429
Bst6I	CTCTTC	1 cut(s)	320
BstC8I	GCNNGC	2 cut(s)	484, 817
BstDEI	CTNAG	3 cut(s)	76, 189, 677
BstEII	GGTNACC	1 cut(s)	491
BstF5I	GGATG	3 cut(s)	105, 254, 514
BstHHI	GCGC	1 cut(s)	36
BstKTI	GATC	4 cut(s)	61, 127, 300, 514
BstMAI	GTCTC	1 cut(s)	765
BstMBI	GATC	4 cut(s)	58, 124, 297, 511
BstNI	CCWGG	1 cut(s)	429
BstPI	GGTNACC	1 cut(s)	491
BstSCI	CCNGG	1 cut(s)	427
BstSFI	CTRYAG	3 cut(s)	14, 411, 764
BstV1I	GCAGC	2 cut(s)	77, 295
BstV2I	GAAGAC	2 cut(s)	32, 171
BsuI	GTATCC	1 cut(s)	436
BtgZI	GCGATG	1 cut(s)	560
BtsCI	GGATG	3 cut(s)	105, 254, 514
Cac8I	GCNNGC	2 cut(s)	484, 817
CaiI	CAGNNNCTG	2 cut(s)	214, 274
CfoI	GCGC	1 cut(s)	36
Cfr13I	GGNCC	1 cut(s)	769
CseI	GACGC	1 cut(s)	533
Csp6I	GTAC	1 cut(s)	19
CviAII	CATG	5 cut(s)	22, 160, 419, 505, 800
CviJI	RGCY	8 cut(s)	280, 308, 316, 482, 571, 670, 676, 737
CviKI_1	RGCY	8 cut(s)	280, 308, 316, 482, 571, 670, 676, 737
CviQI	GTAC	1 cut(s)	19
DdeI	CTNAG	3 cut(s)	76, 189, 677
DpnI	GATC	4 cut(s)	60, 126, 299, 513
DpnII	GATC	4 cut(s)	58, 124, 297, 511
Eam1104I	CTCTTC	1 cut(s)	320
EarI	CTCTTC	1 cut(s)	320
Eco130I	CCWWGG	1 cut(s)	699
Eco47I	GGWCC	1 cut(s)	769
Eco91I	GGTNACC	1 cut(s)	491
EcoO65I	GGTNACC	1 cut(s)	491
EcoRII	CCWGG	1 cut(s)	427
EcoT14I	CCWWGG	1 cut(s)	699
ErhI	CCWWGG	1 cut(s)	699
FaeI	CATG	5 cut(s)	25, 163, 422, 508, 803
FaiI	YATR	9 cut(s)	23, 161, 202, 420, 506, 692, 794, 801, 856
FalI	AAGNNNNNCTT	2 cut(s)	555, 587
FatI	CATG	5 cut(s)	21, 159, 418, 504, 799
FbaI	TGATCA	1 cut(s)	511
Fnu4HI	GCNGC	2 cut(s)	66, 309
FokI	GGATG	3 cut(s)	92, 241, 521
Fsp4HI	GCNGC	2 cut(s)	66, 309
FspBI	CTAG	1 cut(s)	483
GlaI	GCGC	1 cut(s)	35
GluI	GCNGC	2 cut(s)	66, 309
GsuI	CTGGAG	2 cut(s)	296, 759
HgaI	GACGC	1 cut(s)	533
HhaI	GCGC	1 cut(s)	36
Hin1II	CATG	5 cut(s)	25, 163, 422, 508, 803
Hin6I	GCGC	1 cut(s)	34
HinP1I	GCGC	1 cut(s)	34
HincII	GTYRAC	1 cut(s)	553
HindII	GTYRAC	1 cut(s)	553
HindIII	AAGCTT	2 cut(s)	314, 569
HinfI	GANTC	8 cut(s)	156, 211, 245, 251, 271, 554, 580, 845
HphI	GGTGA	3 cut(s)	365, 392, 503
Hpy166II	GTNNAC	1 cut(s)	553
Hpy188I	TCNGA	4 cut(s)	145, 250, 598, 730
Hpy188III	TCNNGA	5 cut(s)	109, 215, 268, 275, 515
Hpy8I	GTNNAC	1 cut(s)	553
HpyAV	CCTTC	3 cut(s)	64, 472, 781
HpyCH4V	TGCA	7 cut(s)	16, 94, 137, 373, 504, 651, 766
HpyF3I	CTNAG	3 cut(s)	76, 189, 677
Hsp92II	CATG	5 cut(s)	25, 163, 422, 508, 803
HspAI	GCGC	1 cut(s)	34
Ksp22I	TGATCA	1 cut(s)	511
Kzo9I	GATC	4 cut(s)	58, 124, 297, 511
LguI	GCTCTTC	1 cut(s)	320
LmnI	GCTCC	2 cut(s)	85, 277
Lsp1109I	GCAGC	2 cut(s)	77, 295
MaeI	CTAG	1 cut(s)	483
MaeIII	GTNAC	2 cut(s)	398, 491
MalI	GATC	4 cut(s)	60, 126, 299, 513
MboI	GATC	4 cut(s)	58, 124, 297, 511
MboII	GAAGA	4 cut(s)	37, 176, 193, 337
MfeI	CAATTG	1 cut(s)	447
MhlI	GDGCHC	1 cut(s)	332
MluCI	AATT	8 cut(s)	95, 130, 368, 394, 447, 613, 646, 774
MlyI	GAGTC	4 cut(s)	254, 265, 548, 839
MnlI	CCTC	5 cut(s)	49, 76, 509, 697, 817
MseI	TTAA	6 cut(s)	98, 360, 393, 438, 666, 807
MspR9I	CCNGG	1 cut(s)	429
MunI	CAATTG	1 cut(s)	447
Mva1269I	GAATGC	1 cut(s)	190
MvaI	CCWGG	1 cut(s)	429
NdeII	GATC	4 cut(s)	58, 124, 297, 511
NheI	GCTAGC	1 cut(s)	482
NlaIII	CATG	5 cut(s)	25, 163, 422, 508, 803
NmuCI	GTSAC	2 cut(s)	398, 491
PciSI	GCTCTTC	1 cut(s)	320
PctI	GAATGC	1 cut(s)	190
PfeI	GAWTC	4 cut(s)	156, 211, 251, 580
PflMI	CCANNNNNTGG	1 cut(s)	274
PkrI	GCNGC	2 cut(s)	67, 310
PleI	GAGTC	4 cut(s)	253, 265, 548, 839
PpsI	GAGTC	4 cut(s)	253, 265, 548, 839
PshBI	ATTAAT	2 cut(s)	360, 393
Psp6I	CCWGG	1 cut(s)	427
PspEI	GGTNACC	1 cut(s)	491
PspGI	CCWGG	1 cut(s)	427
PspPI	GGNCC	1 cut(s)	769
PstI	CTGCAG	2 cut(s)	18, 768
PstNI	CAGNNNCTG	2 cut(s)	214, 274
RsaI	GTAC	1 cut(s)	20
RsaNI	GTAC	1 cut(s)	19
SapI	GCTCTTC	1 cut(s)	320
SaqAI	TTAA	6 cut(s)	98, 360, 393, 438, 666, 807
SatI	GCNGC	2 cut(s)	66, 309
Sau3AI	GATC	4 cut(s)	58, 124, 297, 511
Sau96I	GGNCC	1 cut(s)	769
SchI	GAGTC	4 cut(s)	254, 265, 548, 839
ScrFI	CCNGG	1 cut(s)	429
SduI	GDGCHC	1 cut(s)	332
SfcI	CTRYAG	3 cut(s)	14, 411, 764
SinI	GGWCC	1 cut(s)	769
Sse9I	AATT	8 cut(s)	95, 130, 368, 394, 447, 613, 646, 774
SsiI	CCGC	1 cut(s)	819
SspMI	CTAG	1 cut(s)	483
StyD4I	CCNGG	1 cut(s)	427
StyI	CCWWGG	1 cut(s)	699
TasI	AATT	8 cut(s)	95, 130, 368, 394, 447, 613, 646, 774
TatI	WGTACW	1 cut(s)	18
TfiI	GAWTC	4 cut(s)	156, 211, 251, 580
Tru1I	TTAA	6 cut(s)	98, 360, 393, 438, 666, 807
Tru9I	TTAA	6 cut(s)	98, 360, 393, 438, 666, 807
TseFI	GTSAC	2 cut(s)	398, 491
TseI	GCWGC	2 cut(s)	65, 308
Tsp45I	GTSAC	2 cut(s)	398, 491
TspDTI	ATGAA	7 cut(s)	38, 59, 148, 194, 243, 605, 800
Van91I	CCANNNNNTGG	1 cut(s)	274
VpaK11BI	GGWCC	1 cut(s)	769
VspI	ATTAAT	2 cut(s)	360, 393
XspI	CTAG	1 cut(s)	483

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.