Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0015149.1

Orthogroup ID

OG0002462

Physical Location & Seq

Genomic Coordinates Forward (+)

7012 .. 8776

Gene Structure 1765 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0015149.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1293 bp

atgatggggggtcggagacacaacgcccagtctctctgcaaatcgagggtcggaattgccatagccattggagtccttctcggttgtgtcttcgccttgtgcttccccaatggcttcatctccatttccaatcctgcccctatgctcaaccgccgcttcgcccactccattgcccaggttggttccaccctgtgtgaatcgtctgaaaggctcaacatgctgaaatcggagtttgttgcggtgtcagaggaaaattccgagttgaaaaagaaggttagggaattgacggagaagtttcagttggctgagcaaaggaaagatcaggctgagaagcaagttcttgttttgggtgatcagaagaaagctgggccttttggtactgtcaaaggcttaagaaccaacccctctgttgttcctgatgaatctgtgaatccaagattggcaaagattttggagaaagtggctgttaataaagagctcatagttgctcttgcaaactcaaatgtgaaggcgatgttggagttatggttcaataatattaaaagagtgggaataaccaattatctggttgttgctttggatgaagaaattgccagatactgtgaagcaaaagatgtgccagtatataagagagacccagataaagacattgattctgtcacgagaactggagggaaccatgctgtctctggtatgaaatttcgtatcttgagggagtttttgcagctgggatatagtgtccttctgtcagatgtggatattgtgtacctgcaaaacccttttaatcatctctatcgtgattcagatgtggagtccatgacagatgggcatgataatagaactgcttatggcttcaatgatgtctttgatgaacccaagatgggttgggctcgatatgctcatacaatgcgtatgtgggtctataactctggcttcttctacattcgaccaacaattccttcaattgaactgttggatcgcgtggctggtcggctttctagggaggcaaagtcttgggaccaggcagttttcaatgaggaactctttttcccttctcatcctgggtacgatggccttcatgcttccaggagaactatggatttctatctctttatgaatagcaaggtcctctttaagactgtgaggaaagatgctaatctaagcaagttgaagccggtaattgttcatgtcaattaccatcccgataaatttccacgtatgctagcagttgtggaattttatgttaatgggaagcaggatgcactgaaatcttttcctgatggctcagagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00514 map00514

Pfam Domains

Protein Families

Nucleotid_trans

Protein Analysis

430

Amino Acids

48.75

Weight (kDa)

8.95

Isoelectric Point (pI)

35.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002462)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19360 AT1G19360 AT1G75110
fragaria_vesca	FvH4_2g08270 FvH4_2g08270 FvH4_2g08270 FvH4_2g08270 FvH4_2g40081
malus_domestica	MD08G1032600.v1.1 MD10G1080700.v1.1 MD15G1029300.v1.1
prunus_persica	Prupe.1G382100_v2.0.a1 Prupe.8G102000_v2.0.a1
pyrus_communis	pycom05g06040 pycom08g02590 pycom10g06390 pycom15g02600
rosa_chinensis	RchiOBHm_Chr6g0263151 RchiOBHm_Chr6g0300661
rosa_laevigata	RLG00000011313 RLG00000014368
rosa_multiflora	Rmu_co8387041.1_g000001 Rmu_sc0004226.1_g000014 Rmu_sc0014374.1_g000002 Rmu_sc0015149.1_g000002
rosa_roxburghii	Rroxscaffold_176G00430950 Rroxscaffold_7G00167540 Rroxscaffold_7G00204620
rosa_rugosa	Rorug06G0003900 Rorug06G0298200
rosa_samantha	Rh6AG123000 Rh6AG410900 Rh6BG118000 Rh6BG418100 Rh6CG116200 Rh6CG425600 Rh6DG104700 Rh6DG411000
rosa_wichuraiana	Rw0G002190 Rw6G010570 Rw6G035950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	777
AccII	CGCG	1 cut(s)	981
AciI	CCGC	3 cut(s)	151, 154, 239
AclWI	GGATC	1 cut(s)	984
AcsI	RAATTY	4 cut(s)	253, 698, 1208, 1235
AdeI	CACNNNGTG	1 cut(s)	192
AfaI	GTAC	3 cut(s)	379, 767, 1067
AfiI	CCNNNNNNNGG	1 cut(s)	881
AflII	CTTAAG	1 cut(s)	391
AgsI	TTSAA	7 cut(s)	265, 532, 856, 963, 968, 1033, 1171
AjnI	CCWGG	4 cut(s)	174, 1020, 1060, 1085
AjuI	GAANNNNNNNTTGG	8 cut(s)	284, 316, 422, 454, 500, 532, 943, 975
AloI	GAACNNNNNNTCC	4 cut(s)	512, 544, 1032, 1064
AluBI	AGCT	3 cut(s)	365, 478, 727
AluI	AGCT	3 cut(s)	365, 478, 727
Alw21I	GWGCWC	1 cut(s)	480
Alw26I	GTCTC	4 cut(s)	10, 36, 627, 691
AlwI	GGATC	1 cut(s)	984
AlwNI	CAGNNNCTG	1 cut(s)	600
AoxI	GGCC	2 cut(s)	368, 1072
ApeKI	GCWGC	1 cut(s)	724
ApoI	RAATTY	4 cut(s)	253, 698, 1208, 1235
ArsI	GACNNNNNNTTYG	2 cut(s)	33, 65
AspS9I	GGNCC	3 cut(s)	368, 1018, 1126
AsuHPI	GGTGA	1 cut(s)	362
AsuNHI	GCTAGC	1 cut(s)	1222
AvaII	GGWCC	2 cut(s)	1018, 1126
BanII	GRGCYC	2 cut(s)	480, 892
BauI	CACGAG	1 cut(s)	661
BbsI	GAAGAC	1 cut(s)	82
Bbv12I	GWGCWC	1 cut(s)	480
BbvI	GCAGC	1 cut(s)	736
BccI	CCATC	5 cut(s)	818, 874, 1064, 1206, 1274
BciT130I	CCWGG	4 cut(s)	176, 1022, 1062, 1087
BclI	TGATCA	1 cut(s)	352
BcoDI	GTCTC	4 cut(s)	10, 36, 627, 691
BfaI	CTAG	2 cut(s)	999, 1223
BfrI	CTTAAG	1 cut(s)	391
BfuAI	ACCTGC	1 cut(s)	777
BisI	GCNGC	2 cut(s)	154, 725
BlpI	GCTNAGC	1 cut(s)	306
BlsI	GCNGC	2 cut(s)	155, 726
Bme1390I	CCNGG	4 cut(s)	176, 1022, 1062, 1087
Bme18I	GGWCC	2 cut(s)	1018, 1126
BmgT120I	GGNCC	3 cut(s)	368, 1018, 1126
BmiI	GGNNCC	3 cut(s)	184, 677, 1019
BmrFI	CCNGG	4 cut(s)	176, 1022, 1062, 1087
BmrI	ACTGGG	1 cut(s)	22
BmsI	GCATC	2 cut(s)	1141, 1249
BmtI	GCTAGC	1 cut(s)	1226
BmuI	ACTGGG	1 cut(s)	22
BpiI	GAAGAC	1 cut(s)	82
BplI	GAGNNNNNCTC	2 cut(s)	63, 95
BpmI	CTGGAG	1 cut(s)	690
Bpu1102I	GCTNAGC	1 cut(s)	306
BpuEI	CTTGAG	1 cut(s)	730
BsaAI	YACGTR	1 cut(s)	1217
BsaBI	GATNNNNATC	2 cut(s)	1104, 1155
BsaI	GGTCTC	1 cut(s)	627
BsaJI	CCNNGG	2 cut(s)	174, 1061
BsaXI	ACNNNNNCTCC	4 cut(s)	512, 542, 995, 1025
Bsc4I	CCNNNNNNNGG	1 cut(s)	881
Bse118I	RCCGGY	1 cut(s)	1174
Bse1I	ACTGG	3 cut(s)	28, 620, 673
Bse3DI	GCAATG	1 cut(s)	168
Bse8I	GATNNNNATC	2 cut(s)	1104, 1155
BseBI	CCWGG	4 cut(s)	176, 1022, 1062, 1087
BseDI	CCNNGG	2 cut(s)	174, 1061
BseGI	GGATG	4 cut(s)	586, 1057, 1198, 1264
BseJI	GATNNNNATC	2 cut(s)	1104, 1155
BseLI	CCNNNNNNNGG	1 cut(s)	881
BseMI	GCAATG	1 cut(s)	168
BseMII	CTCAG	2 cut(s)	297, 318
BseNI	ACTGG	3 cut(s)	28, 620, 673
BseXI	GCAGC	1 cut(s)	736
BseYI	CCCAGC	2 cut(s)	365, 727
Bsh1236I	CGCG	1 cut(s)	981
BshFI	GGCC	2 cut(s)	370, 1074
BsiHKAI	GWGCWC	1 cut(s)	480
BsiSI	CCGG	1 cut(s)	1175
BslFI	GGGAC	1 cut(s)	1031
BslI	CCNNNNNNNGG	1 cut(s)	881
BsmAI	GTCTC	4 cut(s)	10, 36, 627, 691
BsmFI	GGGAC	1 cut(s)	1031
BsnI	GGCC	2 cut(s)	370, 1074
Bso31I	GGTCTC	1 cut(s)	627
Bsp1286I	GDGCHC	2 cut(s)	480, 892
Bsp143I	GATC	3 cut(s)	319, 352, 976
Bsp1720I	GCTNAGC	1 cut(s)	306
BspACI	CCGC	3 cut(s)	151, 154, 239
BspANI	GGCC	2 cut(s)	370, 1074
BspCNI	CTCAG	2 cut(s)	298, 319
BspFNI	CGCG	1 cut(s)	981
BspLI	GGNNCC	3 cut(s)	184, 677, 1019
BspMI	ACCTGC	1 cut(s)	777
BspOI	GCTAGC	1 cut(s)	1226
BspPI	GGATC	1 cut(s)	984
BspTI	CTTAAG	1 cut(s)	391
BspTNI	GGTCTC	1 cut(s)	627
BsrDI	GCAATG	1 cut(s)	168
BsrFI	RCCGGY	1 cut(s)	1174
BsrI	ACTGG	3 cut(s)	28, 620, 673
BssAI	RCCGGY	1 cut(s)	1174
BssECI	CCNNGG	2 cut(s)	174, 1061
BssMI	GATC	3 cut(s)	319, 352, 976
BssSI	CACGAG	1 cut(s)	661
Bst2BI	CACGAG	1 cut(s)	661
Bst2UI	CCWGG	4 cut(s)	176, 1022, 1062, 1087
Bst4CI	ACNGT	4 cut(s)	382, 602, 972, 1141
BstAFI	CTTAAG	1 cut(s)	391
BstBAI	YACGTR	1 cut(s)	1217
BstC8I	GCNNGC	1 cut(s)	1224
BstDEI	CTNAG	4 cut(s)	306, 327, 1160, 1285
BstF5I	GGATG	4 cut(s)	586, 1057, 1198, 1264
BstFNI	CGCG	1 cut(s)	981
BstKTI	GATC	3 cut(s)	322, 355, 979
BstMAI	GTCTC	4 cut(s)	10, 36, 627, 691
BstMBI	GATC	3 cut(s)	319, 352, 976
BstMWI	GCNNNNNNNGC	2 cut(s)	217, 896
BstNI	CCWGG	4 cut(s)	176, 1022, 1062, 1087
BstNSI	RCATGY	1 cut(s)	220
BstSCI	CCNGG	4 cut(s)	174, 1020, 1060, 1085
BstUI	CGCG	1 cut(s)	981
BstV1I	GCAGC	1 cut(s)	736
BstV2I	GAAGAC	1 cut(s)	82
BstXI	CCANNNNNNTGG	1 cut(s)	565
BsuRI	GGCC	2 cut(s)	370, 1074
BtgZI	GCGATG	1 cut(s)	527
BtsCI	GGATG	4 cut(s)	586, 1057, 1198, 1264
BtsIMutI	CAGTG	1 cut(s)	1262
BveI	ACCTGC	1 cut(s)	777
Cac8I	GCNNGC	1 cut(s)	1224
CaiI	CAGNNNCTG	1 cut(s)	600
Cfr10I	RCCGGY	1 cut(s)	1174
Cfr13I	GGNCC	3 cut(s)	368, 1018, 1126
Csp6I	GTAC	3 cut(s)	378, 766, 1066
CviAII	CATG	6 cut(s)	217, 680, 817, 830, 1079, 1187
CviQI	GTAC	3 cut(s)	378, 766, 1066
DdeI	CTNAG	4 cut(s)	306, 327, 1160, 1285
DpnI	GATC	3 cut(s)	321, 354, 978
DpnII	GATC	3 cut(s)	319, 352, 976
DraIII	CACNNNGTG	1 cut(s)	192
Ecl136II	GAGCTC	1 cut(s)	478
Eco24I	GRGCYC	2 cut(s)	480, 892
Eco31I	GGTCTC	1 cut(s)	627
Eco47I	GGWCC	2 cut(s)	1018, 1126
Eco53kI	GAGCTC	1 cut(s)	478
EcoICRI	GAGCTC	1 cut(s)	478
EcoO109I	RGGNCCY	1 cut(s)	1126
EcoRII	CCWGG	4 cut(s)	174, 1020, 1060, 1085
EcoT38I	GRGCYC	2 cut(s)	480, 892
FaeI	CATG	6 cut(s)	220, 683, 820, 833, 1082, 1190
FalI	AAGNNNNNCTT	2 cut(s)	1115, 1147
FaqI	GGGAC	1 cut(s)	1031
FatI	CATG	6 cut(s)	216, 679, 816, 829, 1078, 1186
FbaI	TGATCA	1 cut(s)	352
Fnu4HI	GCNGC	2 cut(s)	154, 725
FokI	GGATG	4 cut(s)	593, 1044, 1185, 1271
FriOI	GRGCYC	2 cut(s)	480, 892
Fsp4HI	GCNGC	2 cut(s)	154, 725
FspBI	CTAG	2 cut(s)	999, 1223
GluI	GCNGC	2 cut(s)	154, 725
GsaI	CCCAGC	2 cut(s)	369, 731
GsuI	CTGGAG	1 cut(s)	690
HaeIII	GGCC	2 cut(s)	370, 1074
HapII	CCGG	1 cut(s)	1175
Hin1II	CATG	6 cut(s)	220, 683, 820, 833, 1082, 1190
HinfI	GANTC	7 cut(s)	72, 197, 422, 430, 653, 800, 812
HpaII	CCGG	1 cut(s)	1175
HphI	GGTGA	1 cut(s)	362
Hpy166II	GTNNAC	1 cut(s)	766
Hpy188III	TCNNGA	6 cut(s)	416, 661, 709, 797, 1202, 1277
Hpy8I	GTNNAC	1 cut(s)	766
HpyAV	CCTTC	7 cut(s)	86, 265, 502, 752, 969, 1062, 1085
HpyCH4III	ACNGT	4 cut(s)	382, 602, 972, 1141
HpyCH4IV	ACGT	1 cut(s)	1216
HpyCH4V	TGCA	5 cut(s)	39, 494, 724, 772, 1262
HpyF10VI	GCNNNNNNNGC	2 cut(s)	217, 896
HpyF3I	CTNAG	4 cut(s)	306, 327, 1160, 1285
HpySE526I	ACGT	1 cut(s)	1216
Hsp92II	CATG	6 cut(s)	220, 683, 820, 833, 1082, 1190
Ksp22I	TGATCA	1 cut(s)	352
Kzo9I	GATC	3 cut(s)	319, 352, 976
Lsp1109I	GCAGC	1 cut(s)	736
LweI	GCATC	2 cut(s)	1141, 1249
MaeI	CTAG	2 cut(s)	999, 1223
MaeII	ACGT	1 cut(s)	1216
MaeIII	GTNAC	1 cut(s)	658
MalI	GATC	3 cut(s)	321, 354, 978
MboI	GATC	3 cut(s)	319, 352, 976
MboII	GAAGA	4 cut(s)	82, 370, 596, 928
MfeI	CAATTG	1 cut(s)	963
MhlI	GDGCHC	2 cut(s)	480, 892
MlyI	GAGTC	2 cut(s)	81, 821
MmeI	TCCRAC	3 cut(s)	31, 498, 954
MnlI	CCTC	9 cut(s)	39, 241, 415, 665, 705, 997, 1030, 1137, 1139
MseI	TTAA	6 cut(s)	392, 468, 540, 783, 1134, 1245
MspA1I	CMGCKG	1 cut(s)	727
MspCI	CTTAAG	1 cut(s)	391
MspI	CCGG	1 cut(s)	1175
MspR9I	CCNGG	4 cut(s)	176, 1022, 1062, 1087
MunI	CAATTG	1 cut(s)	963
MvaI	CCWGG	4 cut(s)	176, 1022, 1062, 1087
MvnI	CGCG	1 cut(s)	981
MwoI	GCNNNNNNNGC	2 cut(s)	217, 896
NdeII	GATC	3 cut(s)	319, 352, 976
NheI	GCTAGC	1 cut(s)	1222
NlaIII	CATG	6 cut(s)	220, 683, 820, 833, 1082, 1190
NlaIV	GGNNCC	3 cut(s)	184, 677, 1019
NmuCI	GTSAC	1 cut(s)	658
NspI	RCATGY	1 cut(s)	220
PfeI	GAWTC	5 cut(s)	197, 422, 430, 653, 800
PfoI	TCCNGGA	1 cut(s)	1085
PkrI	GCNGC	2 cut(s)	155, 726
PleI	GAGTC	2 cut(s)	80, 820
PpsI	GAGTC	2 cut(s)	80, 820
Ppu21I	YACGTR	1 cut(s)	1217
PpuMI	RGGWCCY	1 cut(s)	1126
Psp124BI	GAGCTC	1 cut(s)	480
Psp5II	RGGWCCY	1 cut(s)	1126
Psp6I	CCWGG	4 cut(s)	174, 1020, 1060, 1085
PspFI	CCCAGC	2 cut(s)	365, 727
PspGI	CCWGG	4 cut(s)	174, 1020, 1060, 1085
PspN4I	GGNNCC	3 cut(s)	184, 677, 1019
PspPI	GGNCC	3 cut(s)	368, 1018, 1126
PspPPI	RGGWCCY	1 cut(s)	1126
PstNI	CAGNNNCTG	1 cut(s)	600
PvuII	CAGCTG	1 cut(s)	727
RsaI	GTAC	3 cut(s)	379, 767, 1067
RsaNI	GTAC	3 cut(s)	378, 766, 1066
SacI	GAGCTC	1 cut(s)	480
SaqAI	TTAA	6 cut(s)	392, 468, 540, 783, 1134, 1245
SatI	GCNGC	2 cut(s)	154, 725
Sau3AI	GATC	3 cut(s)	319, 352, 976
Sau96I	GGNCC	3 cut(s)	368, 1018, 1126
SchI	GAGTC	2 cut(s)	81, 821
ScrFI	CCNGG	4 cut(s)	176, 1022, 1062, 1087
SduI	GDGCHC	2 cut(s)	480, 892
SetI	ASST	8 cut(s)	180, 276, 367, 480, 729, 771, 1128, 1219
SfaNI	GCATC	2 cut(s)	1141, 1249
SinI	GGWCC	2 cut(s)	1018, 1126
SmlI	CTYRAG	2 cut(s)	391, 709
SmoI	CTYRAG	2 cut(s)	391, 709
SsiI	CCGC	3 cut(s)	151, 154, 239
SspI	AATATT	1 cut(s)	538
SspMI	CTAG	2 cut(s)	999, 1223
SstI	GAGCTC	1 cut(s)	480
StyD4I	CCNGG	4 cut(s)	174, 1020, 1060, 1085
TaaI	ACNGT	4 cut(s)	382, 602, 972, 1141
TaiI	ACGT	1 cut(s)	1219
TaqI	TCGA	3 cut(s)	44, 892, 946
TauI	GCSGC	1 cut(s)	156
TfiI	GAWTC	5 cut(s)	197, 422, 430, 653, 800
Tru1I	TTAA	6 cut(s)	392, 468, 540, 783, 1134, 1245
Tru9I	TTAA	6 cut(s)	392, 468, 540, 783, 1134, 1245
TscAI	CASTG	1 cut(s)	1269
TseFI	GTSAC	1 cut(s)	658
TseI	GCWGC	1 cut(s)	724
Tsp45I	GTSAC	1 cut(s)	658
TspDTI	ATGAA	8 cut(s)	106, 435, 597, 710, 885, 1067, 1130, 1175
TspGWI	ACGGA	1 cut(s)	302
TspRI	CASTG	1 cut(s)	1269
Vha464I	CTTAAG	1 cut(s)	391
VpaK11BI	GGWCC	2 cut(s)	1018, 1126
XapI	RAATTY	4 cut(s)	253, 698, 1208, 1235
XceI	RCATGY	1 cut(s)	220
XcmI	CCANNNNNNNNNTGG	2 cut(s)	686, 1093
XspI	CTAG	2 cut(s)	999, 1223

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.