Rroxscaffold_176G00430950

UDP-D-xylose L-fucose alpha-1,3-D-xylosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000176
OG0002462
Physical Location & Seq
Reverse (-)
40137 .. 42169
2033 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_176G00430950.1

Sequence Viewer

Length: 1293 bp
ATGATGGGGGGTCGGAGACACAACGCCCAGTCTCTCTGCAAATCGAGGGTCGGAATTGCCATAGCCATTGGAGTCCTTCTCGGTTGTGTCTTCGCCTTGTGCTTCCCCAATGGCTTCATCTCCATTTCCAATCCTGCCCCTATGCTCAACCGCCGCTTCGCCCACTCCATTGCCCAGGTTGGTTCCACCCTGTGTGAATCGTCTGAAAGGCTCAACATGCTGAAATCGGAGTTTGTTGCGGTGTCAGAGGAAAATTCCGAGTTGAAAAAGAAGGTTAGGGAATTGACGGAGAAGTTTCAGTTGGCTGAGCAAAGGAAAGATCAGGCTGAGAAGCAAGTTCTTGTTTTGGGTGATCAGAAGAAAGCTGGGCCTTTTGGTACTGTCAAAGGCTTAAGAACCAACCCCTCTGTTGTTCCTGATGAATCTGTGAATCCAAGATTGGCAAAGATTTTGGAGAAAGTGGCTGTTAATAAAGAGCTCATAGTTGCTCTTGCAAACTCAAATGTGAAGGCGATGTTGGAGTTATGGTTCAATAATATTAAAAGAGTGGGAATAACCAATTATCTGGTTGTTGCTTTGGATGAAGAAATTGCCAGATACTGTGAAGCAAAAGATGTGCCAGTATATAAGAGAGACCCAGATAAAGACATTGATTCTGTCACGAGAACTGGAGGGAACCATGCTGTCTCTGGTATGAAATTTCGTATCTTGAGGGAGTTTTTGCAGCTGGGATATAGTGTCCTTCTGTCGGATGTGGATATTGTGTACCTGCAAAACCCTTTTAATCATCTCTATCGTGATTCAGATGTGGAGTCCATGACGGATGGGCATGATAATAGAACTGCTTATGGCTTCAATGATGTCTTTGATGAACCCAAGATGGGTTGGGCTCGATATGCTCATACAATGCGTATGTGGGTCTATAACTCTGGCTTCTTCTACATTCGACCAACAATTCCTTCAATTGAACTGTTGGATCGCGTGGCTGGTCGGCTTTCTAGGGAGCCAAACTCTTGGGACCAGGCAGTTTTCAATGAGGAACTCTTTTTCCCTTCTCATCCTGGGTACGATGGCCTTCATGCTTCCAGGAGAACTATGGATTTCTATCTCTTTATGAATAGCAAGGTCCTCTTTAAGACTGTGAGGAAAGATGCTAATCTAAGCAAGTTGAAGCCGGTAATTGTTCATGTCAATTACCATCCCGATAAATTTCCACGTATGCTAGCAGTTGTGGAATTTTATGTTAATGGGAAGCAGGATGCACTGAAATCTTTTCCTGATGGCTCCGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00514 map00514
Pfam Domains
Protein Families
Nucleotid_trans

Protein Analysis

430

Amino Acids

48.76

Weight (kDa)

8.86

Isoelectric Point (pI)

35.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Nucleotid_trans PF03407 185 - 403 4.6e-50 Nucleotide-diphospho-sugar transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 777
AccII CGCG 1 cut(s) 981
AciI CCGC 3 cut(s) 151, 154, 239
AclWI GGATC 1 cut(s) 984
AcsI RAATTY 4 cut(s) 253, 698, 1208, 1235
AdeI CACNNNGTG 1 cut(s) 192
AfaI GTAC 3 cut(s) 379, 767, 1067
AfiI CCNNNNNNNGG 2 cut(s) 748, 881
AflII CTTAAG 1 cut(s) 391
AgsI TTSAA 7 cut(s) 265, 532, 856, 963, 968, 1033, 1171
AjnI CCWGG 4 cut(s) 174, 1020, 1060, 1085
AjuI GAANNNNNNNTTGG 8 cut(s) 284, 316, 422, 454, 500, 532, 943, 975
AloI GAACNNNNNNTCC 4 cut(s) 512, 544, 1032, 1064
AluBI AGCT 3 cut(s) 365, 478, 727
AluI AGCT 3 cut(s) 365, 478, 727
Alw21I GWGCWC 1 cut(s) 480
Alw26I GTCTC 4 cut(s) 10, 36, 627, 691
AlwI GGATC 1 cut(s) 984
AlwNI CAGNNNCTG 1 cut(s) 600
AoxI GGCC 2 cut(s) 368, 1072
ApeKI GCWGC 1 cut(s) 724
ApoI RAATTY 4 cut(s) 253, 698, 1208, 1235
ArsI GACNNNNNNTTYG 2 cut(s) 33, 65
AspS9I GGNCC 3 cut(s) 368, 1018, 1126
AsuHPI GGTGA 1 cut(s) 362
AsuNHI GCTAGC 1 cut(s) 1222
AvaII GGWCC 2 cut(s) 1018, 1126
BanII GRGCYC 2 cut(s) 480, 892
BauI CACGAG 1 cut(s) 661
BbsI GAAGAC 1 cut(s) 82
Bbv12I GWGCWC 1 cut(s) 480
BbvI GCAGC 1 cut(s) 736
BccI CCATC 5 cut(s) 818, 874, 1064, 1206, 1274
BciT130I CCWGG 4 cut(s) 176, 1022, 1062, 1087
BclI TGATCA 1 cut(s) 352
BcoDI GTCTC 4 cut(s) 10, 36, 627, 691
BfaI CTAG 2 cut(s) 999, 1223
BfrI CTTAAG 1 cut(s) 391
BfuAI ACCTGC 1 cut(s) 777
BisI GCNGC 2 cut(s) 154, 725
BlpI GCTNAGC 1 cut(s) 306
BlsI GCNGC 2 cut(s) 155, 726
Bme1390I CCNGG 4 cut(s) 176, 1022, 1062, 1087
Bme18I GGWCC 2 cut(s) 1018, 1126
BmgT120I GGNCC 3 cut(s) 368, 1018, 1126
BmiI GGNNCC 5 cut(s) 184, 677, 1005, 1019, 1285
BmrFI CCNGG 4 cut(s) 176, 1022, 1062, 1087
BmrI ACTGGG 1 cut(s) 22
BmsI GCATC 2 cut(s) 1141, 1249
BmtI GCTAGC 1 cut(s) 1226
BmuI ACTGGG 1 cut(s) 22
BpiI GAAGAC 1 cut(s) 82
BplI GAGNNNNNCTC 4 cut(s) 63, 95, 995, 1027
BpmI CTGGAG 1 cut(s) 690
Bpu1102I GCTNAGC 1 cut(s) 306
BpuEI CTTGAG 1 cut(s) 730
BsaAI YACGTR 1 cut(s) 1217
BsaBI GATNNNNATC 2 cut(s) 1104, 1155
BsaI GGTCTC 1 cut(s) 627
BsaJI CCNNGG 2 cut(s) 174, 1061
BsaXI ACNNNNNCTCC 2 cut(s) 512, 542
Bsc4I CCNNNNNNNGG 2 cut(s) 748, 881
Bse118I RCCGGY 1 cut(s) 1174
Bse1I ACTGG 3 cut(s) 28, 620, 673
Bse3DI GCAATG 1 cut(s) 168
Bse8I GATNNNNATC 2 cut(s) 1104, 1155
BseBI CCWGG 4 cut(s) 176, 1022, 1062, 1087
BseDI CCNNGG 2 cut(s) 174, 1061
BseGI GGATG 6 cut(s) 586, 757, 829, 1057, 1198, 1264
BseJI GATNNNNATC 2 cut(s) 1104, 1155
BseLI CCNNNNNNNGG 2 cut(s) 748, 881
BseMI GCAATG 1 cut(s) 168
BseMII CTCAG 2 cut(s) 297, 318
BseNI ACTGG 3 cut(s) 28, 620, 673
BseXI GCAGC 1 cut(s) 736
BseYI CCCAGC 2 cut(s) 365, 727
Bsh1236I CGCG 1 cut(s) 981
BshFI GGCC 2 cut(s) 370, 1074
BsiHKAI GWGCWC 1 cut(s) 480
BsiSI CCGG 1 cut(s) 1175
BslFI GGGAC 1 cut(s) 1031
BslI CCNNNNNNNGG 2 cut(s) 748, 881
BsmAI GTCTC 4 cut(s) 10, 36, 627, 691
BsmFI GGGAC 1 cut(s) 1031
BsnI GGCC 2 cut(s) 370, 1074
Bso31I GGTCTC 1 cut(s) 627
Bsp1286I GDGCHC 2 cut(s) 480, 892
Bsp143I GATC 3 cut(s) 319, 352, 976
Bsp1720I GCTNAGC 1 cut(s) 306
BspACI CCGC 3 cut(s) 151, 154, 239
BspANI GGCC 2 cut(s) 370, 1074
BspCNI CTCAG 2 cut(s) 298, 319
BspFNI CGCG 1 cut(s) 981
BspLI GGNNCC 5 cut(s) 184, 677, 1005, 1019, 1285
BspMI ACCTGC 1 cut(s) 777
BspOI GCTAGC 1 cut(s) 1226
BspPI GGATC 1 cut(s) 984
BspTI CTTAAG 1 cut(s) 391
BspTNI GGTCTC 1 cut(s) 627
BsrDI GCAATG 1 cut(s) 168
BsrFI RCCGGY 1 cut(s) 1174
BsrI ACTGG 3 cut(s) 28, 620, 673
BssAI RCCGGY 1 cut(s) 1174
BssECI CCNNGG 2 cut(s) 174, 1061
BssMI GATC 3 cut(s) 319, 352, 976
BssSI CACGAG 1 cut(s) 661
Bst2BI CACGAG 1 cut(s) 661
Bst2UI CCWGG 4 cut(s) 176, 1022, 1062, 1087
Bst4CI ACNGT 4 cut(s) 382, 602, 972, 1141
BstAFI CTTAAG 1 cut(s) 391
BstBAI YACGTR 1 cut(s) 1217
BstC8I GCNNGC 1 cut(s) 1224
BstDEI CTNAG 3 cut(s) 306, 327, 1160
BstF5I GGATG 6 cut(s) 586, 757, 829, 1057, 1198, 1264
BstFNI CGCG 1 cut(s) 981
BstKTI GATC 3 cut(s) 322, 355, 979
BstMAI GTCTC 4 cut(s) 10, 36, 627, 691
BstMBI GATC 3 cut(s) 319, 352, 976
BstMWI GCNNNNNNNGC 2 cut(s) 217, 896
BstNI CCWGG 4 cut(s) 176, 1022, 1062, 1087
BstNSI RCATGY 1 cut(s) 220
BstSCI CCNGG 4 cut(s) 174, 1020, 1060, 1085
BstUI CGCG 1 cut(s) 981
BstV1I GCAGC 1 cut(s) 736
BstV2I GAAGAC 1 cut(s) 82
BstXI CCANNNNNNTGG 2 cut(s) 565, 1014
BsuRI GGCC 2 cut(s) 370, 1074
BtgZI GCGATG 1 cut(s) 527
BtsCI GGATG 6 cut(s) 586, 757, 829, 1057, 1198, 1264
BtsIMutI CAGTG 1 cut(s) 1262
BveI ACCTGC 1 cut(s) 777
Cac8I GCNNGC 1 cut(s) 1224
CaiI CAGNNNCTG 1 cut(s) 600
Cfr10I RCCGGY 1 cut(s) 1174
Cfr13I GGNCC 3 cut(s) 368, 1018, 1126
Csp6I GTAC 3 cut(s) 378, 766, 1066
CviAII CATG 6 cut(s) 217, 680, 817, 830, 1079, 1187
CviQI GTAC 3 cut(s) 378, 766, 1066
DdeI CTNAG 3 cut(s) 306, 327, 1160
DpnI GATC 3 cut(s) 321, 354, 978
DpnII GATC 3 cut(s) 319, 352, 976
DraIII CACNNNGTG 1 cut(s) 192
Ecl136II GAGCTC 1 cut(s) 478
Eco24I GRGCYC 2 cut(s) 480, 892
Eco31I GGTCTC 1 cut(s) 627
Eco47I GGWCC 2 cut(s) 1018, 1126
Eco53kI GAGCTC 1 cut(s) 478
EcoICRI GAGCTC 1 cut(s) 478
EcoO109I RGGNCCY 1 cut(s) 1126
EcoRII CCWGG 4 cut(s) 174, 1020, 1060, 1085
EcoT38I GRGCYC 2 cut(s) 480, 892
FaeI CATG 6 cut(s) 220, 683, 820, 833, 1082, 1190
FalI AAGNNNNNCTT 2 cut(s) 1115, 1147
FaqI GGGAC 1 cut(s) 1031
FatI CATG 6 cut(s) 216, 679, 816, 829, 1078, 1186
FbaI TGATCA 1 cut(s) 352
Fnu4HI GCNGC 2 cut(s) 154, 725
FokI GGATG 6 cut(s) 593, 764, 836, 1044, 1185, 1271
FriOI GRGCYC 2 cut(s) 480, 892
Fsp4HI GCNGC 2 cut(s) 154, 725
FspBI CTAG 2 cut(s) 999, 1223
GluI GCNGC 2 cut(s) 154, 725
GsaI CCCAGC 2 cut(s) 369, 731
GsuI CTGGAG 1 cut(s) 690
HaeIII GGCC 2 cut(s) 370, 1074
HapII CCGG 1 cut(s) 1175
Hin1II CATG 6 cut(s) 220, 683, 820, 833, 1082, 1190
HinfI GANTC 7 cut(s) 72, 197, 422, 430, 653, 800, 812
HpaII CCGG 1 cut(s) 1175
HphI GGTGA 1 cut(s) 362
Hpy166II GTNNAC 1 cut(s) 766
Hpy188III TCNNGA 6 cut(s) 416, 661, 709, 797, 1202, 1277
Hpy8I GTNNAC 1 cut(s) 766
HpyAV CCTTC 7 cut(s) 86, 265, 502, 752, 969, 1062, 1085
HpyCH4III ACNGT 4 cut(s) 382, 602, 972, 1141
HpyCH4IV ACGT 1 cut(s) 1216
HpyCH4V TGCA 5 cut(s) 39, 494, 724, 772, 1262
HpyF10VI GCNNNNNNNGC 2 cut(s) 217, 896
HpyF3I CTNAG 3 cut(s) 306, 327, 1160
HpySE526I ACGT 1 cut(s) 1216
Hsp92II CATG 6 cut(s) 220, 683, 820, 833, 1082, 1190
Ksp22I TGATCA 1 cut(s) 352
Kzo9I GATC 3 cut(s) 319, 352, 976
LmnI GCTCC 2 cut(s) 1003, 1289
Lsp1109I GCAGC 1 cut(s) 736
LweI GCATC 2 cut(s) 1141, 1249
MaeI CTAG 2 cut(s) 999, 1223
MaeII ACGT 1 cut(s) 1216
MaeIII GTNAC 1 cut(s) 658
MalI GATC 3 cut(s) 321, 354, 978
MboI GATC 3 cut(s) 319, 352, 976
MboII GAAGA 4 cut(s) 82, 370, 596, 928
MfeI CAATTG 1 cut(s) 963
MhlI GDGCHC 2 cut(s) 480, 892
MlyI GAGTC 2 cut(s) 81, 821
MmeI TCCRAC 4 cut(s) 31, 498, 729, 954
MnlI CCTC 8 cut(s) 39, 241, 415, 665, 705, 1030, 1137, 1139
MseI TTAA 6 cut(s) 392, 468, 540, 783, 1134, 1245
MspA1I CMGCKG 1 cut(s) 727
MspCI CTTAAG 1 cut(s) 391
MspI CCGG 1 cut(s) 1175
MspR9I CCNGG 4 cut(s) 176, 1022, 1062, 1087
MunI CAATTG 1 cut(s) 963
MvaI CCWGG 4 cut(s) 176, 1022, 1062, 1087
MvnI CGCG 1 cut(s) 981
MwoI GCNNNNNNNGC 2 cut(s) 217, 896
NdeII GATC 3 cut(s) 319, 352, 976
NheI GCTAGC 1 cut(s) 1222
NlaIII CATG 6 cut(s) 220, 683, 820, 833, 1082, 1190
NlaIV GGNNCC 5 cut(s) 184, 677, 1005, 1019, 1285
NmuCI GTSAC 1 cut(s) 658
NspI RCATGY 1 cut(s) 220
PfeI GAWTC 5 cut(s) 197, 422, 430, 653, 800
PfoI TCCNGGA 1 cut(s) 1085
PkrI GCNGC 2 cut(s) 155, 726
PleI GAGTC 2 cut(s) 80, 820
PpsI GAGTC 2 cut(s) 80, 820
Ppu21I YACGTR 1 cut(s) 1217
PpuMI RGGWCCY 1 cut(s) 1126
Psp124BI GAGCTC 1 cut(s) 480
Psp5II RGGWCCY 1 cut(s) 1126
Psp6I CCWGG 4 cut(s) 174, 1020, 1060, 1085
PspFI CCCAGC 2 cut(s) 365, 727
PspGI CCWGG 4 cut(s) 174, 1020, 1060, 1085
PspN4I GGNNCC 5 cut(s) 184, 677, 1005, 1019, 1285
PspPI GGNCC 3 cut(s) 368, 1018, 1126
PspPPI RGGWCCY 1 cut(s) 1126
PstNI CAGNNNCTG 1 cut(s) 600
PvuII CAGCTG 1 cut(s) 727
RsaI GTAC 3 cut(s) 379, 767, 1067
RsaNI GTAC 3 cut(s) 378, 766, 1066
SacI GAGCTC 1 cut(s) 480
SaqAI TTAA 6 cut(s) 392, 468, 540, 783, 1134, 1245
SatI GCNGC 2 cut(s) 154, 725
Sau3AI GATC 3 cut(s) 319, 352, 976
Sau96I GGNCC 3 cut(s) 368, 1018, 1126
SchI GAGTC 2 cut(s) 81, 821
ScrFI CCNGG 4 cut(s) 176, 1022, 1062, 1087
SduI GDGCHC 2 cut(s) 480, 892
SetI ASST 8 cut(s) 180, 276, 367, 480, 729, 771, 1128, 1219
SfaNI GCATC 2 cut(s) 1141, 1249
SinI GGWCC 2 cut(s) 1018, 1126
SmlI CTYRAG 2 cut(s) 391, 709
SmoI CTYRAG 2 cut(s) 391, 709
SsiI CCGC 3 cut(s) 151, 154, 239
SspI AATATT 1 cut(s) 538
SspMI CTAG 2 cut(s) 999, 1223
SstI GAGCTC 1 cut(s) 480
StyD4I CCNGG 4 cut(s) 174, 1020, 1060, 1085
TaaI ACNGT 4 cut(s) 382, 602, 972, 1141
TaiI ACGT 1 cut(s) 1219
TaqI TCGA 3 cut(s) 44, 892, 946
TauI GCSGC 1 cut(s) 156
TfiI GAWTC 5 cut(s) 197, 422, 430, 653, 800
Tru1I TTAA 6 cut(s) 392, 468, 540, 783, 1134, 1245
Tru9I TTAA 6 cut(s) 392, 468, 540, 783, 1134, 1245
TscAI CASTG 1 cut(s) 1269
TseFI GTSAC 1 cut(s) 658
TseI GCWGC 1 cut(s) 724
Tsp45I GTSAC 1 cut(s) 658
TspDTI ATGAA 8 cut(s) 106, 435, 597, 710, 885, 1067, 1130, 1175
TspGWI ACGGA 2 cut(s) 302, 836
TspRI CASTG 1 cut(s) 1269
Vha464I CTTAAG 1 cut(s) 391
VpaK11BI GGWCC 2 cut(s) 1018, 1126
XapI RAATTY 4 cut(s) 253, 698, 1208, 1235
XceI RCATGY 1 cut(s) 220
XcmI CCANNNNNNNNNTGG 2 cut(s) 686, 1093
XspI CTAG 2 cut(s) 999, 1223
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.