FvH4_2g40081

UDP-D-xylose L-fucose alpha-1,3-D-xylosyltransferase 2-like

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Forward (+)
28642916 .. 28645143
2228 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g40081.t1

Sequence Viewer

Length: 1314 bp
ATGGCGCCTCGCCGTGACGGCTCGTTGATGAGAGACAAGGCGGCGGCTCAGTCATTTCGCGGATCTCGAATTCTCATAGCCATTGTCGTCGGAATCCTTCTCGGCTCCGTCTTCGCCTTCTTCTATCCTCACGGCTTCTTCATCAACAGCTCCGATGATCGGATTGCCCAGAACTGGCGTATCGGAAAATCGGATCTCCAGAGTTCTTCTCAGTGTGAACCACCGGAACGGATTGAGATGCTGAGGTCTGAGATTCGAGAACTGTCAGACAAGAATGGTGAGTTGAAGACGCAGTTACAAGATCTTACTGAAAAGCTACGGCAGGCTGAGCAGGGGAAAGATCATGCGCATGAGCAGTTTTCAGTGTTGGGCAAACCACATAAGGCTGGACCTTTTGGTACCGTCAAGGGCTTGAGGACCAACCCGACTGTTACTCCTGATGAATCTGTGAATCCGAGGTTGGCGAAGATCTTGGAGGGTGTGGCAGTTCGTAAAGAGCTCATTGTTGTACTTGCAAATTCTAATGTGAAGCCCATGTTGGAGGTGCAGGTTACTACCATCAAGAAGGCTGGCATAACCAATTATCTGGTTGTTGCATTAGACAATCAGATTGAAGAATTTTGCAAAGCCAATGATGTTCCTGTATACAGGAGAGATCCTGATGAAGGTATTGATTCAATTGCCAAGACAGGAGGTAACCATGCCGTCTCTGGGTTGAAGTTCCGTATCTTGAGGGAGTTTTTGCAACTAGGTTATGGCGTACTTCTGTCGGACGTTGATATAGTGTACTTGCAGAACCCGTTCAATCATCTGTATCGGGATTCCGATGTAGAGTCAATGACTGATGGTCACAATAATATGACAGCGTATGGATACAATGATGTTTTTGATGAACCTTCTATGGGTTGGGCCCGTTATGCTCATACAATGAGGATATGGGTTTATAACTCTGGCTTCTTCTACATAAGACCTACACTTCCTTCTATTGAGCTTTTGGATCGTGTGGCTGGACGGCTTTCTAGGGAAAAAGCATGGGACCAAGCGGTTTTTAATGAAGAGCTGTATTTCCCTTCACATCCAGGGTATGATGGGCTTCATGCTGCCAAGAGAACAATGGATTTCTACATGTTTATGAACAGCAAGGTTCTCTTCAAGACGGTCAGGAAAGATGCTAATTTGAAGAAGTTGAAACCAGTAATCCTTCATGTAAATTACCACCCAGACAAACTTCCGAGAATGAAGGCAATTGTAGAATTCTACATTAATGGCAAGCAAGATGCACTGGAACCTTTCCCTGATGGTTCTAATTGGTAG

Protein Analysis

438

Amino Acids

49.63

Weight (kDa)

8.27

Isoelectric Point (pI)

36.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Nucleotid_trans PF03407 192 - 410 1.2e-46 Nucleotide-diphospho-sugar transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 945
Acc16I TGCGCA 1 cut(s) 348
Acc36I ACCTGC 1 cut(s) 538
Acc65I GGTACC 1 cut(s) 398
AccB1I GGYRCC 2 cut(s) 4, 398
AccI GTMKAC 1 cut(s) 645
AccII CGCG 1 cut(s) 60
AciI CCGC 4 cut(s) 41, 44, 60, 1043
AclWI GGATC 4 cut(s) 70, 201, 650, 1005
AcsI RAATTY 4 cut(s) 69, 517, 617, 1253
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 4 cut(s) 400, 510, 762, 788
AfiI CCNNNNNNNGG 5 cut(s) 159, 174, 665, 711, 902
AflIII ACRYGT 1 cut(s) 1125
AgsI TTSAA 8 cut(s) 286, 614, 678, 718, 805, 1153, 1180, 1189
AhdI GACNNNNNGTC 1 cut(s) 846
AjnI CCWGG 1 cut(s) 1078
AjuI GAANNNNNNNTTGG 4 cut(s) 443, 475, 521, 553
AluBI AGCT 5 cut(s) 150, 316, 499, 991, 1060
AluI AGCT 5 cut(s) 150, 316, 499, 991, 1060
Alw21I GWGCWC 1 cut(s) 501
Alw26I GTCTC 2 cut(s) 27, 712
AlwI GGATC 4 cut(s) 70, 201, 650, 1005
AoxI GGCC 1 cut(s) 909
ApaI GGGCCC 1 cut(s) 913
ApeKI GCWGC 1 cut(s) 1100
ApoI RAATTY 4 cut(s) 69, 517, 617, 1253
AseI ATTAAT 1 cut(s) 1263
Asp700I GAANNNNTTC 1 cut(s) 800
Asp718I GGTACC 1 cut(s) 398
AspLEI GCGC 2 cut(s) 7, 349
AspS9I GGNCC 5 cut(s) 389, 417, 909, 910, 1036
AsuHPI GGTGA 1 cut(s) 290
AvaII GGWCC 3 cut(s) 389, 417, 1036
BaeGI GKGCMC 1 cut(s) 913
BaeI ACNNNNGTAYC 2 cut(s) 163, 196
BanI GGYRCC 2 cut(s) 4, 398
BanII GRGCYC 2 cut(s) 501, 913
BbsI GAAGAC 2 cut(s) 103, 293
Bbv12I GWGCWC 1 cut(s) 501
BbvCI CCTCAGC 1 cut(s) 242
BbvI GCAGC 1 cut(s) 1087
BccI CCATC 4 cut(s) 566, 839, 1082, 1292
BceAI ACGGC 5 cut(s) 34, 148, 335, 689, 1028
BciT130I CCWGG 1 cut(s) 1080
BciVI GTATCC 1 cut(s) 866
BcoDI GTCTC 2 cut(s) 27, 712
BfaI CTAG 2 cut(s) 749, 1020
BfoI RGCGCY 1 cut(s) 8
BfuAI ACCTGC 1 cut(s) 538
BfuI GTATCC 1 cut(s) 866
BglI GCCNNNNNGGC 1 cut(s) 18
BglII AGATCT 2 cut(s) 301, 468
BisI GCNGC 3 cut(s) 42, 45, 1101
BlpI GCTNAGC 1 cut(s) 327
BlsI GCNGC 3 cut(s) 43, 46, 1102
Bme1390I CCNGG 1 cut(s) 1080
Bme18I GGWCC 3 cut(s) 389, 417, 1036
BmeRI GACNNNNNGTC 1 cut(s) 846
BmgT120I GGNCC 5 cut(s) 389, 417, 909, 910, 1036
BmiI GGNNCC 6 cut(s) 6, 106, 400, 911, 1037, 1287
BmrFI CCNGG 1 cut(s) 1080
BmsI GCATC 3 cut(s) 228, 1159, 1267
BpiI GAAGAC 2 cut(s) 103, 293
BplI GAGNNNNNCTC 2 cut(s) 193, 225
BpmI CTGGAG 1 cut(s) 182
Bpu10I CCTNAGC 1 cut(s) 242
Bpu1102I GCTNAGC 1 cut(s) 327
BpuEI CTTGAG 2 cut(s) 433, 751
BsaHI GRCGYC 1 cut(s) 5
BsaJI CCNNGG 2 cut(s) 455, 1079
BsaWI WCCGGW 1 cut(s) 223
BsaXI ACNNNNNCTCC 2 cut(s) 418, 448
Bsc4I CCNNNNNNNGG 5 cut(s) 159, 174, 665, 711, 902
Bse1I ACTGG 3 cut(s) 179, 1193, 1287
BseBI CCWGG 1 cut(s) 1080
BseDI CCNNGG 2 cut(s) 455, 1079
BseGI GGATG 1 cut(s) 1075
BseLI CCNNNNNNNGG 5 cut(s) 159, 174, 665, 711, 902
BseMII CTCAG 5 cut(s) 62, 224, 233, 240, 318
BseNI ACTGG 3 cut(s) 179, 1193, 1287
BseSI GKGCMC 1 cut(s) 913
BseXI GCAGC 1 cut(s) 1087
BsgI GTGCAG 1 cut(s) 566
Bsh1236I CGCG 1 cut(s) 60
BshFI GGCC 1 cut(s) 911
BshNI GGYRCC 2 cut(s) 4, 398
BsiHKAI GWGCWC 1 cut(s) 501
BsiSI CCGG 1 cut(s) 224
BslFI GGGAC 1 cut(s) 1049
BslI CCNNNNNNNGG 5 cut(s) 159, 174, 665, 711, 902
BsmAI GTCTC 2 cut(s) 27, 712
BsmBI CGTCTC 1 cut(s) 712
BsmFI GGGAC 1 cut(s) 1049
BsnI GGCC 1 cut(s) 911
Bsp120I GGGCCC 1 cut(s) 909
Bsp1286I GDGCHC 2 cut(s) 501, 913
Bsp143I GATC 8 cut(s) 62, 157, 193, 301, 340, 468, 655, 997
Bsp1720I GCTNAGC 1 cut(s) 327
BspACI CCGC 4 cut(s) 41, 44, 60, 1043
BspANI GGCC 1 cut(s) 911
BspCNI CTCAG 5 cut(s) 61, 223, 234, 241, 319
BspFNI CGCG 1 cut(s) 60
BspLI GGNNCC 6 cut(s) 6, 106, 400, 911, 1037, 1287
BspMI ACCTGC 1 cut(s) 538
BspPI GGATC 4 cut(s) 70, 201, 650, 1005
BspQI GCTCTTC 1 cut(s) 1050
BspT107I GGYRCC 2 cut(s) 4, 398
BsrI ACTGG 3 cut(s) 179, 1193, 1287
BssECI CCNNGG 2 cut(s) 455, 1079
BssMI GATC 8 cut(s) 62, 157, 193, 301, 340, 468, 655, 997
BssNAI GTATAC 1 cut(s) 646
BssNI GRCGYC 1 cut(s) 5
Bst1107I GTATAC 1 cut(s) 646
Bst2UI CCWGG 1 cut(s) 1080
Bst4CI ACNGT 4 cut(s) 264, 403, 430, 1159
Bst6I CTCTTC 2 cut(s) 1050, 1154
BstACI GRCGYC 1 cut(s) 5
BstC8I GCNNGC 3 cut(s) 324, 571, 1271
BstDEI CTNAG 5 cut(s) 48, 210, 242, 249, 327
BstEII GGTNACC 1 cut(s) 695
BstENI CCTNNNNNAGG 1 cut(s) 663
BstF5I GGATG 1 cut(s) 1075
BstFNI CGCG 1 cut(s) 60
BstH2I RGCGCY 1 cut(s) 8
BstHHI GCGC 2 cut(s) 7, 349
BstKTI GATC 8 cut(s) 65, 160, 196, 304, 343, 471, 658, 1000
BstMAI GTCTC 2 cut(s) 27, 712
BstMBI GATC 8 cut(s) 62, 157, 193, 301, 340, 468, 655, 997
BstMWI GCNNNNNNNGC 3 cut(s) 18, 328, 917
BstNI CCWGG 1 cut(s) 1080
BstNSI RCATGY 1 cut(s) 1129
BstPI GGTNACC 1 cut(s) 695
BstSCI CCNGG 1 cut(s) 1078
BstSLI GKGCMC 1 cut(s) 913
BstUI CGCG 1 cut(s) 60
BstV1I GCAGC 1 cut(s) 1087
BstV2I GAAGAC 2 cut(s) 103, 293
BstX2I RGATCY 5 cut(s) 62, 193, 301, 468, 655
BstXI CCANNNNNNTGG 1 cut(s) 586
BstYI RGATCY 5 cut(s) 62, 193, 301, 468, 655
BstZ17I GTATAC 1 cut(s) 646
BsuI GTATCC 1 cut(s) 866
BsuRI GGCC 1 cut(s) 911
BtsCI GGATG 1 cut(s) 1075
BtsIMutI CAGTG 3 cut(s) 218, 369, 1280
BveI ACCTGC 1 cut(s) 538
Cac8I GCNNGC 3 cut(s) 324, 571, 1271
CfoI GCGC 2 cut(s) 7, 349
Cfr13I GGNCC 5 cut(s) 389, 417, 909, 910, 1036
CseI GACGC 1 cut(s) 298
Csp6I GTAC 4 cut(s) 399, 509, 761, 787
CviAII CATG 8 cut(s) 344, 350, 535, 701, 1032, 1097, 1126, 1205
CviQI GTAC 4 cut(s) 399, 509, 761, 787
DdeI CTNAG 5 cut(s) 48, 210, 242, 249, 327
DinI GGCGCC 1 cut(s) 6
DpnI GATC 8 cut(s) 64, 159, 195, 303, 342, 470, 657, 999
DpnII GATC 8 cut(s) 62, 157, 193, 301, 340, 468, 655, 997
DriI GACNNNNNGTC 1 cut(s) 846
Eam1104I CTCTTC 2 cut(s) 1050, 1154
Eam1105I GACNNNNNGTC 1 cut(s) 846
EarI CTCTTC 2 cut(s) 1050, 1154
Ecl136II GAGCTC 1 cut(s) 499
Eco24I GRGCYC 2 cut(s) 501, 913
Eco47I GGWCC 3 cut(s) 389, 417, 1036
Eco53kI GAGCTC 1 cut(s) 499
Eco91I GGTNACC 1 cut(s) 695
EcoICRI GAGCTC 1 cut(s) 499
EcoNI CCTNNNNNAGG 1 cut(s) 663
EcoO65I GGTNACC 1 cut(s) 695
EcoRI GAATTC 2 cut(s) 69, 1253
EcoRII CCWGG 1 cut(s) 1078
EcoT38I GRGCYC 2 cut(s) 501, 913
EgeI GGCGCC 1 cut(s) 6
EheI GGCGCC 1 cut(s) 6
Esp3I CGTCTC 1 cut(s) 712
FaeI CATG 8 cut(s) 347, 353, 538, 704, 1035, 1100, 1129, 1208
FalI AAGNNNNNCTT 2 cut(s) 1133, 1165
FaqI GGGAC 1 cut(s) 1049
FatI CATG 8 cut(s) 343, 349, 534, 700, 1031, 1096, 1125, 1204
FblI GTMKAC 1 cut(s) 645
Fnu4HI GCNGC 3 cut(s) 42, 45, 1101
FokI GGATG 1 cut(s) 1062
FriOI GRGCYC 2 cut(s) 501, 913
Fsp4HI GCNGC 3 cut(s) 42, 45, 1101
FspAI RTGCGCAY 1 cut(s) 348
FspBI CTAG 2 cut(s) 749, 1020
FspI TGCGCA 1 cut(s) 348
GlaI GCGC 2 cut(s) 6, 348
GluI GCNGC 3 cut(s) 42, 45, 1101
GsuI CTGGAG 1 cut(s) 182
HaeII RGCGCY 1 cut(s) 8
HaeIII GGCC 1 cut(s) 911
HapII CCGG 1 cut(s) 224
HgaI GACGC 1 cut(s) 298
HhaI GCGC 2 cut(s) 7, 349
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 8 cut(s) 347, 353, 538, 704, 1035, 1100, 1129, 1208
Hin6I GCGC 2 cut(s) 5, 347
HinP1I GCGC 2 cut(s) 5, 347
HinfI GANTC 7 cut(s) 93, 253, 443, 451, 674, 821, 833
HpaII CCGG 1 cut(s) 224
HphI GGTGA 1 cut(s) 290
Hpy166II GTNNAC 3 cut(s) 218, 646, 787
Hpy8I GTNNAC 3 cut(s) 218, 646, 787
Hpy99I CGWCG 1 cut(s) 92
HpyAV CCTTC 9 cut(s) 107, 127, 559, 659, 906, 990, 1080, 1211, 1234
HpyCH4III ACNGT 4 cut(s) 264, 403, 430, 1159
HpyCH4IV ACGT 1 cut(s) 774
HpyCH4V TGCA 7 cut(s) 515, 547, 596, 624, 745, 793, 1280
HpyF10VI GCNNNNNNNGC 3 cut(s) 18, 328, 917
HpyF3I CTNAG 5 cut(s) 48, 210, 242, 249, 327
HpySE526I ACGT 1 cut(s) 774
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 8 cut(s) 347, 353, 538, 704, 1035, 1100, 1129, 1208
HspAI GCGC 2 cut(s) 5, 347
KasI GGCGCC 1 cut(s) 4
KpnI GGTACC 1 cut(s) 402
Kzo9I GATC 8 cut(s) 62, 157, 193, 301, 340, 468, 655, 997
LguI GCTCTTC 1 cut(s) 1050
LmnI GCTCC 2 cut(s) 110, 155
Lsp1109I GCAGC 1 cut(s) 1087
LweI GCATC 3 cut(s) 228, 1159, 1267
MaeI CTAG 2 cut(s) 749, 1020
MaeII ACGT 1 cut(s) 774
MaeIII GTNAC 6 cut(s) 14, 294, 430, 550, 695, 848
MalI GATC 8 cut(s) 64, 159, 195, 303, 342, 470, 657, 999
MboI GATC 8 cut(s) 62, 157, 193, 301, 340, 468, 655, 997
MfeI CAATTG 2 cut(s) 678, 1245
MflI RGATCY 5 cut(s) 62, 193, 301, 468, 655
MhlI GDGCHC 2 cut(s) 501, 913
Mly113I GGCGCC 1 cut(s) 5
MlyI GAGTC 1 cut(s) 842
MmeI TCCRAC 3 cut(s) 70, 519, 750
MroXI GAANNNNTTC 1 cut(s) 800
MseI TTAA 2 cut(s) 1050, 1263
MslI CAYNNNNRTG 2 cut(s) 348, 1130
MspI CCGG 1 cut(s) 224
MspR9I CCNGG 1 cut(s) 1080
MunI CAATTG 2 cut(s) 678, 1245
MvaI CCWGG 1 cut(s) 1080
MvnI CGCG 1 cut(s) 60
MwoI GCNNNNNNNGC 3 cut(s) 18, 328, 917
NarI GGCGCC 1 cut(s) 5
NdeII GATC 8 cut(s) 62, 157, 193, 301, 340, 468, 655, 997
NlaIII CATG 8 cut(s) 347, 353, 538, 704, 1035, 1100, 1129, 1208
NlaIV GGNNCC 6 cut(s) 6, 106, 400, 911, 1037, 1287
NmeAIII GCCGAG 1 cut(s) 81
NmuCI GTSAC 2 cut(s) 14, 848
NsbI TGCGCA 1 cut(s) 348
NspI RCATGY 1 cut(s) 1129
PciI ACATGT 1 cut(s) 1125
PciSI GCTCTTC 1 cut(s) 1050
PcsI WCGNNNNNNNCGW 1 cut(s) 64
PdmI GAANNNNTTC 1 cut(s) 800
PfeI GAWTC 6 cut(s) 93, 253, 443, 451, 674, 821
PkrI GCNGC 3 cut(s) 43, 46, 1102
PleI GAGTC 1 cut(s) 841
PluTI GGCGCC 1 cut(s) 8
PpsI GAGTC 1 cut(s) 841
PscI ACATGT 1 cut(s) 1125
PshBI ATTAAT 1 cut(s) 1263
PsiI TTATAA 1 cut(s) 945
Psp124BI GAGCTC 1 cut(s) 501
Psp6I CCWGG 1 cut(s) 1078
PspEI GGTNACC 1 cut(s) 695
PspGI CCWGG 1 cut(s) 1078
PspN4I GGNNCC 6 cut(s) 6, 106, 400, 911, 1037, 1287
PspOMI GGGCCC 1 cut(s) 909
PspPI GGNCC 5 cut(s) 389, 417, 909, 910, 1036
PsuI RGATCY 5 cut(s) 62, 193, 301, 468, 655
RsaI GTAC 4 cut(s) 400, 510, 762, 788
RsaNI GTAC 4 cut(s) 399, 509, 761, 787
RseI CAYNNNNRTG 2 cut(s) 348, 1130
SacI GAGCTC 1 cut(s) 501
SapI GCTCTTC 1 cut(s) 1050
SaqAI TTAA 2 cut(s) 1050, 1263
SatI GCNGC 3 cut(s) 42, 45, 1101
Sau3AI GATC 8 cut(s) 62, 157, 193, 301, 340, 468, 655, 997
Sau96I GGNCC 5 cut(s) 389, 417, 909, 910, 1036
SchI GAGTC 1 cut(s) 842
ScrFI CCNGG 1 cut(s) 1080
SduI GDGCHC 2 cut(s) 501, 913
SfaNI GCATC 3 cut(s) 228, 1159, 1267
SfoI GGCGCC 1 cut(s) 6
SinI GGWCC 3 cut(s) 389, 417, 1036
SmiMI CAYNNNNRTG 2 cut(s) 348, 1130
SmlI CTYRAG 2 cut(s) 412, 730
SmoI CTYRAG 2 cut(s) 412, 730
SsiI CCGC 4 cut(s) 41, 44, 60, 1043
SspDI GGCGCC 1 cut(s) 4
SspMI CTAG 2 cut(s) 749, 1020
SstI GAGCTC 1 cut(s) 501
StyD4I CCNGG 1 cut(s) 1078
TaaI ACNGT 4 cut(s) 264, 403, 430, 1159
TaiI ACGT 1 cut(s) 777
TaqI TCGA 2 cut(s) 67, 256
TatI WGTACW 2 cut(s) 508, 786
TauI GCSGC 2 cut(s) 44, 47
TfiI GAWTC 6 cut(s) 93, 253, 443, 451, 674, 821
Tru1I TTAA 2 cut(s) 1050, 1263
Tru9I TTAA 2 cut(s) 1050, 1263
TscAI CASTG 3 cut(s) 218, 369, 1287
TseFI GTSAC 2 cut(s) 14, 848
TseI GCWGC 1 cut(s) 1100
Tsp45I GTSAC 2 cut(s) 14, 848
TspDTI ATGAA 9 cut(s) 130, 456, 678, 906, 1068, 1085, 1148, 1193, 1253
TspGWI ACGGA 3 cut(s) 97, 244, 713
TspRI CASTG 3 cut(s) 218, 369, 1287
VpaK11BI GGWCC 3 cut(s) 389, 417, 1036
VspI ATTAAT 1 cut(s) 1263
XagI CCTNNNNNAGG 1 cut(s) 663
XapI RAATTY 4 cut(s) 69, 517, 617, 1253
XceI RCATGY 1 cut(s) 1129
XcmI CCANNNNNNNNNTGG 2 cut(s) 707, 1111
XmiI GTMKAC 1 cut(s) 645
XmnI GAANNNNTTC 1 cut(s) 800
XspI CTAG 2 cut(s) 749, 1020
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.