FvH4_2g08270

UDP-D-xylose L-fucose alpha-1,3-D-xylosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0002462
Physical Location & Seq
Reverse (-)
7190054 .. 7192502
2449 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g08270.t1

Sequence Viewer

Length: 1077 bp
ATGCTGAAATCGGAGTTTGTTGCGGCGTCAGAGGAGAATTCCGAGTTGAAAAAGAAGGTTAGGGAACTGACAGAGAAGTTTCGGTTGGCTGAACAAAGGAAAGATCAGGCTGAAAAGCAAGTTCTTGTCTTGGGTGATCAGAAGAAAGCTGGGCCTTTTGGTACTGTCAAAGGCTTAAGAACCAACCCCTCTGTTGTTCCTGATGAATCTGTGAATCCAAGATTGGCAAAGGTTTTGGAGAAAGTTGCTGTCAATAAAGAGATCATAGTTGCTCTTGCAAACTCAAATGTGAAGGAGATGTTGGAGGTATGGTTCACTAATATTAAAAGAGTGGGCATACCCAATTATCTGGTTGTTGCTTTGGATGAAGAAATTGCCAGATACTGTGAAGCAAATAATGTGCCAGTATATAAGAGAGACCCAGATAAAGGCATTGATTCTGTTGCCAGAACGGGGGGGAACCATGCTGTCTCTGGTTTGAAATTTCATATCTTGAGGGAGTTTTTGCAGCTGGGATATAGTGTCCTTCTGTCAGATGTTGATATTGTGTACCTGCAAAACCCTTTTAACCATCTCTATCGTGATTCCGATGTGGAGTCCATGACGGATGGACATAATAATAATACTGCTTATGGCTTCAATGATGTCTTTGATGAACCAAAGATGGGTTGGGCTCGATATGCTCATACAATGCGTATGTGGGTTTATAACTCTGGCTTCTTCTACATTCGACCAACAATTCCTTCAATTGAACTGTTGGATCGGGTGGCTGGTCGGCTTTCTAAGCAGCCAAACTCTTGGGACCAGGCAGTTTTCAATGAGGAACTCTTTTTCCCTTCTCATCCTGGGTATGATGGCCTTCATGCGTCGAGGAGAACTATGGATTTCTATCTCTTTATGAATAGCAAGGTCCTGTTTAAGACTGTGAGGAAAGATGATAATCTAAGCAAGTTGAAGCCGGTAATTGTTCATGTCAATTACCATCCTGATAAACTTCCACGCATGCTAGCAGTTGTGGAATTTTACGTTAACGGGAAGCAGGATGCCCTGAAATCTTTTCCTGATGGCTCAGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00514 map00514
Pfam Domains
Protein Families
Nucleotid_trans

Protein Analysis

359

Amino Acids

40.9

Weight (kDa)

7.77

Isoelectric Point (pI)

33.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Nucleotid_trans PF03407 113 - 332 1.8e-49 Nucleotide-diphospho-sugar transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 708
Acc36I ACCTGC 1 cut(s) 561
AciI CCGC 1 cut(s) 23
AclWI GGATC 1 cut(s) 768
AcsI RAATTY 3 cut(s) 37, 482, 1019
AcyI GRCGYC 1 cut(s) 26
AfaI GTAC 2 cut(s) 163, 551
AfiI CCNNNNNNNGG 3 cut(s) 428, 453, 665
AflII CTTAAG 1 cut(s) 175
AgsI TTSAA 7 cut(s) 49, 481, 640, 747, 752, 817, 955
AjnI CCWGG 2 cut(s) 804, 844
AjuI GAANNNNNNNTTGG 8 cut(s) 68, 100, 206, 238, 284, 316, 727, 759
AloI GAACNNNNNNTCC 4 cut(s) 296, 328, 816, 848
AluBI AGCT 2 cut(s) 149, 511
AluI AGCT 2 cut(s) 149, 511
Alw26I GTCTC 2 cut(s) 411, 475
AlwI GGATC 1 cut(s) 768
AlwNI CAGNNNCTG 1 cut(s) 384
AoxI GGCC 2 cut(s) 152, 856
ApeKI GCWGC 2 cut(s) 508, 787
ApoI RAATTY 3 cut(s) 37, 482, 1019
AspS9I GGNCC 3 cut(s) 152, 802, 910
AsuHPI GGTGA 1 cut(s) 146
AsuNHI GCTAGC 1 cut(s) 1006
AvaII GGWCC 2 cut(s) 802, 910
BanII GRGCYC 1 cut(s) 676
BbvI GCAGC 2 cut(s) 520, 799
BccI CCATC 6 cut(s) 579, 602, 658, 848, 990, 1058
BciT130I CCWGG 2 cut(s) 806, 846
BclI TGATCA 1 cut(s) 136
BcoDI GTCTC 2 cut(s) 411, 475
BfaI CTAG 1 cut(s) 1007
BfrI CTTAAG 1 cut(s) 175
BfuAI ACCTGC 1 cut(s) 561
BisI GCNGC 3 cut(s) 24, 509, 788
BlsI GCNGC 3 cut(s) 25, 510, 789
Bme1390I CCNGG 2 cut(s) 806, 846
Bme18I GGWCC 2 cut(s) 802, 910
BmgT120I GGNCC 3 cut(s) 152, 802, 910
BmiI GGNNCC 2 cut(s) 461, 803
BmrFI CCNGG 2 cut(s) 806, 846
BmsI GCATC 1 cut(s) 1033
BmtI GCTAGC 1 cut(s) 1010
BpuEI CTTGAG 1 cut(s) 514
BsaBI GATNNNNATC 2 cut(s) 888, 939
BsaHI GRCGYC 1 cut(s) 26
BsaI GGTCTC 1 cut(s) 411
BsaJI CCNNGG 1 cut(s) 845
BsaXI ACNNNNNCTCC 2 cut(s) 296, 326
Bsc4I CCNNNNNNNGG 3 cut(s) 428, 453, 665
Bse118I RCCGGY 1 cut(s) 958
Bse1I ACTGG 1 cut(s) 404
Bse8I GATNNNNATC 2 cut(s) 888, 939
BseBI CCWGG 2 cut(s) 806, 846
BseDI CCNNGG 1 cut(s) 845
BseGI GGATG 5 cut(s) 370, 613, 841, 982, 1048
BseJI GATNNNNATC 2 cut(s) 888, 939
BseLI CCNNNNNNNGG 3 cut(s) 428, 453, 665
BseNI ACTGG 1 cut(s) 404
BseRI GAGGAG 2 cut(s) 47, 886
BseXI GCAGC 2 cut(s) 520, 799
BseYI CCCAGC 2 cut(s) 149, 511
BshFI GGCC 2 cut(s) 154, 858
BsiSI CCGG 1 cut(s) 959
BslFI GGGAC 1 cut(s) 815
BslI CCNNNNNNNGG 3 cut(s) 428, 453, 665
BsmAI GTCTC 2 cut(s) 411, 475
BsmFI GGGAC 1 cut(s) 815
BsnI GGCC 2 cut(s) 154, 858
Bso31I GGTCTC 1 cut(s) 411
Bsp1286I GDGCHC 1 cut(s) 676
Bsp143I GATC 4 cut(s) 103, 136, 261, 760
BspACI CCGC 1 cut(s) 23
BspANI GGCC 2 cut(s) 154, 858
BspLI GGNNCC 2 cut(s) 461, 803
BspMI ACCTGC 1 cut(s) 561
BspOI GCTAGC 1 cut(s) 1010
BspPI GGATC 1 cut(s) 768
BspTI CTTAAG 1 cut(s) 175
BspTNI GGTCTC 1 cut(s) 411
BsrFI RCCGGY 1 cut(s) 958
BsrI ACTGG 1 cut(s) 404
BssAI RCCGGY 1 cut(s) 958
BssECI CCNNGG 1 cut(s) 845
BssMI GATC 4 cut(s) 103, 136, 261, 760
BssNI GRCGYC 1 cut(s) 26
Bst2UI CCWGG 2 cut(s) 806, 846
Bst4CI ACNGT 4 cut(s) 166, 386, 756, 925
BstACI GRCGYC 1 cut(s) 26
BstAFI CTTAAG 1 cut(s) 175
BstC8I GCNNGC 2 cut(s) 1004, 1008
BstDEI CTNAG 3 cut(s) 783, 944, 1069
BstF5I GGATG 5 cut(s) 370, 613, 841, 982, 1048
BstKTI GATC 4 cut(s) 106, 139, 264, 763
BstMAI GTCTC 2 cut(s) 411, 475
BstMBI GATC 4 cut(s) 103, 136, 261, 760
BstMWI GCNNNNNNNGC 2 cut(s) 680, 784
BstNI CCWGG 2 cut(s) 806, 846
BstNSI RCATGY 1 cut(s) 1006
BstSCI CCNGG 2 cut(s) 804, 844
BstV1I GCAGC 2 cut(s) 520, 799
BstXI CCANNNNNNTGG 2 cut(s) 349, 798
BsuRI GGCC 2 cut(s) 154, 858
BtsCI GGATG 5 cut(s) 370, 613, 841, 982, 1048
BveI ACCTGC 1 cut(s) 561
Cac8I GCNNGC 2 cut(s) 1004, 1008
CaiI CAGNNNCTG 1 cut(s) 384
Cfr10I RCCGGY 1 cut(s) 958
Cfr13I GGNCC 3 cut(s) 152, 802, 910
CseI GACGC 2 cut(s) 15, 855
Csp6I GTAC 2 cut(s) 162, 550
CviAII CATG 5 cut(s) 464, 601, 863, 971, 1003
CviQI GTAC 2 cut(s) 162, 550
DdeI CTNAG 3 cut(s) 783, 944, 1069
DpnI GATC 4 cut(s) 105, 138, 263, 762
DpnII GATC 4 cut(s) 103, 136, 261, 760
Eco24I GRGCYC 1 cut(s) 676
Eco31I GGTCTC 1 cut(s) 411
Eco47I GGWCC 2 cut(s) 802, 910
EcoO109I RGGNCCY 1 cut(s) 910
EcoRI GAATTC 1 cut(s) 37
EcoRII CCWGG 2 cut(s) 804, 844
EcoT38I GRGCYC 1 cut(s) 676
FaeI CATG 5 cut(s) 467, 604, 866, 974, 1006
FaqI GGGAC 1 cut(s) 815
FatI CATG 5 cut(s) 463, 600, 862, 970, 1002
FbaI TGATCA 1 cut(s) 136
Fnu4HI GCNGC 3 cut(s) 24, 509, 788
FokI GGATG 5 cut(s) 377, 620, 828, 969, 1055
FriOI GRGCYC 1 cut(s) 676
Fsp4HI GCNGC 3 cut(s) 24, 509, 788
FspBI CTAG 1 cut(s) 1007
GluI GCNGC 3 cut(s) 24, 509, 788
GsaI CCCAGC 2 cut(s) 153, 515
HaeIII GGCC 2 cut(s) 154, 858
HapII CCGG 1 cut(s) 959
HgaI GACGC 2 cut(s) 15, 855
Hin1I GRCGYC 1 cut(s) 26
Hin1II CATG 5 cut(s) 467, 604, 866, 974, 1006
HincII GTYRAC 1 cut(s) 1030
HindII GTYRAC 1 cut(s) 1030
HinfI GANTC 5 cut(s) 206, 214, 437, 584, 596
HpaI GTTAAC 1 cut(s) 1030
HpaII CCGG 1 cut(s) 959
HphI GGTGA 1 cut(s) 146
Hpy166II GTNNAC 3 cut(s) 315, 550, 1030
Hpy188I TCNGA 7 cut(s) 13, 31, 43, 141, 535, 589, 1072
Hpy188III TCNNGA 5 cut(s) 200, 493, 581, 986, 1061
Hpy8I GTNNAC 3 cut(s) 315, 550, 1030
Hpy99I CGWCG 1 cut(s) 871
HpyAV CCTTC 6 cut(s) 49, 286, 536, 753, 846, 869
HpyCH4III ACNGT 4 cut(s) 166, 386, 756, 925
HpyCH4IV ACGT 1 cut(s) 1026
HpyCH4V TGCA 3 cut(s) 278, 508, 556
HpyF10VI GCNNNNNNNGC 2 cut(s) 680, 784
HpyF3I CTNAG 3 cut(s) 783, 944, 1069
HpySE526I ACGT 1 cut(s) 1026
Hsp92I GRCGYC 1 cut(s) 26
Hsp92II CATG 5 cut(s) 467, 604, 866, 974, 1006
Ksp22I TGATCA 1 cut(s) 136
KspAI GTTAAC 1 cut(s) 1030
Kzo9I GATC 4 cut(s) 103, 136, 261, 760
Lsp1109I GCAGC 2 cut(s) 520, 799
LweI GCATC 1 cut(s) 1033
MaeI CTAG 1 cut(s) 1007
MaeII ACGT 1 cut(s) 1026
MalI GATC 4 cut(s) 105, 138, 263, 762
MboI GATC 4 cut(s) 103, 136, 261, 760
MboII GAAGA 3 cut(s) 154, 380, 712
MfeI CAATTG 1 cut(s) 747
MhlI GDGCHC 1 cut(s) 676
MluCI AATT 9 cut(s) 37, 343, 372, 482, 738, 747, 963, 976, 1019
MlyI GAGTC 1 cut(s) 605
MmeI TCCRAC 2 cut(s) 282, 738
MnlI CCTC 7 cut(s) 25, 199, 298, 489, 814, 864, 921
MseI TTAA 5 cut(s) 176, 324, 567, 918, 1029
MspA1I CMGCKG 1 cut(s) 511
MspCI CTTAAG 1 cut(s) 175
MspI CCGG 1 cut(s) 959
MspR9I CCNGG 2 cut(s) 806, 846
MunI CAATTG 1 cut(s) 747
MvaI CCWGG 2 cut(s) 806, 846
MwoI GCNNNNNNNGC 2 cut(s) 680, 784
NdeII GATC 4 cut(s) 103, 136, 261, 760
NheI GCTAGC 1 cut(s) 1006
NlaIII CATG 5 cut(s) 467, 604, 866, 974, 1006
NlaIV GGNNCC 2 cut(s) 461, 803
NspI RCATGY 1 cut(s) 1006
PaeI GCATGC 1 cut(s) 1006
PfeI GAWTC 4 cut(s) 206, 214, 437, 584
PkrI GCNGC 3 cut(s) 25, 510, 789
PleI GAGTC 1 cut(s) 604
PpsI GAGTC 1 cut(s) 604
PpuMI RGGWCCY 1 cut(s) 910
PsiI TTATAA 1 cut(s) 708
Psp5II RGGWCCY 1 cut(s) 910
Psp6I CCWGG 2 cut(s) 804, 844
PspFI CCCAGC 2 cut(s) 149, 511
PspGI CCWGG 2 cut(s) 804, 844
PspN4I GGNNCC 2 cut(s) 461, 803
PspPI GGNCC 3 cut(s) 152, 802, 910
PspPPI RGGWCCY 1 cut(s) 910
PstNI CAGNNNCTG 1 cut(s) 384
PvuII CAGCTG 1 cut(s) 511
RsaI GTAC 2 cut(s) 163, 551
RsaNI GTAC 2 cut(s) 162, 550
SaqAI TTAA 5 cut(s) 176, 324, 567, 918, 1029
SatI GCNGC 3 cut(s) 24, 509, 788
Sau3AI GATC 4 cut(s) 103, 136, 261, 760
Sau96I GGNCC 3 cut(s) 152, 802, 910
SchI GAGTC 1 cut(s) 605
ScrFI CCNGG 2 cut(s) 806, 846
SduI GDGCHC 1 cut(s) 676
SetI ASST 8 cut(s) 60, 151, 234, 309, 513, 555, 912, 1029
SfaNI GCATC 1 cut(s) 1033
SinI GGWCC 2 cut(s) 802, 910
SmlI CTYRAG 2 cut(s) 175, 493
SmoI CTYRAG 2 cut(s) 175, 493
SphI GCATGC 1 cut(s) 1006
Sse9I AATT 9 cut(s) 37, 343, 372, 482, 738, 747, 963, 976, 1019
SsiI CCGC 1 cut(s) 23
SspI AATATT 1 cut(s) 322
SspMI CTAG 1 cut(s) 1007
StyD4I CCNGG 2 cut(s) 804, 844
TaaI ACNGT 4 cut(s) 166, 386, 756, 925
TaiI ACGT 1 cut(s) 1029
TaqI TCGA 3 cut(s) 676, 730, 869
TasI AATT 9 cut(s) 37, 343, 372, 482, 738, 747, 963, 976, 1019
TauI GCSGC 1 cut(s) 26
TfiI GAWTC 4 cut(s) 206, 214, 437, 584
Tru1I TTAA 5 cut(s) 176, 324, 567, 918, 1029
Tru9I TTAA 5 cut(s) 176, 324, 567, 918, 1029
TseI GCWGC 2 cut(s) 508, 787
TspDTI ATGAA 7 cut(s) 219, 381, 476, 669, 851, 914, 959
TspGWI ACGGA 1 cut(s) 620
Vha464I CTTAAG 1 cut(s) 175
VpaK11BI GGWCC 2 cut(s) 802, 910
XapI RAATTY 3 cut(s) 37, 482, 1019
XceI RCATGY 1 cut(s) 1006
XcmI CCANNNNNNNNNTGG 2 cut(s) 470, 666
XspI CTAG 1 cut(s) 1007
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.