Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0002462

Physical Location & Seq

Genomic Coordinates Reverse (-)

1899008 .. 1901296

Gene Structure 2289 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g02590.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1311 bp

ATGATGGCAGGTCGTAGAGAGGGGTCGTTGATGAGGGACAAGACGCAGTCGTTTCCTGGATCTCGAATCGTGACCGCCATTGTCATCGGAATCCTACTCGGCTTTGTCGTCGCCTACTTGTTTCCTCACGGATTCCTGGGCTCCGATAGGCCTATCCAAAACCGCAGATTCGGGAAATCGGATCTCCAGGTTAGCTCATCACAGTGTGAATCAACAGAACGGATTACCGCGTTGAGGTCCGATATTGCATCATTGTCGGACAAGAATGGCGAGCTGAAGAAGGAGGTGCAGGAACTAACTGAAAAGCTACGTCTGTCTGAACAAGGAAAGGATCATGCACATGAGCAGTTTTCTGTGTTAGGTAAACCACATAAGGCTGGCCCTTTTGGTACCGTCAAGGGCTTGAGAACTAACCCGACAGTCATTCCTGATGAATCCGTGAATCCGAGGCTGGCAAAGATCTTGGAGGAAGTTGCAGTTCAAAAAGAGCTTATAGTTGCACTTGCGAATTCAAATGTGAAAGTCATGTTGGAGGTATGGTTTACTAGCATCAAGAAAGTTGGTATAACCAATTATCTGGTAGTAGGATTAGACGATGAAATTGAAGAATTTTGCAAAGCTAATGACGTTCCTGTATACAAGAGAGATTCGGATGAGGGTATTGATCCAATTGCGAAGAAGGGGGGTAACCATGCCGTCTCAGGGTTGAAGTTTCGCATCTTGAGGGAGTTTCTGCAACTAGGTTATAGTGTTCTTCTCTCGGATGTTGATATAGTATATTTGCAAAACCCGTTCAATCATCTTTATCGAGATTCTGATGTAGAGTCCATGACTGATGGTCACAATAACTATACAGCTTATGGATTTAATGATGTGTTTGACGAACCCTCTATGGGGTGGGCTCGTTATGCTCACACGATGAGGATATGGGTTTATAACTCTGGTTTCTTTTACATAAGACCTACGCTTCCTGCAATTGAGCTTCTGATCGATCGTGTGGCTGAACGACTCTCTAGGCCACAAAAAGCATGGGACCAAGCAGTATTCAACGAGGAACTATTTTTCCCTTCTCATCCGGGGTACAGCGGGCTTCATGCTTCCAAGAGAACAATGGATTTCTATCTGTTTATGAATAGCAAGGTCCTCTTCAAGACGGTCAGGAAAGATGCTAACTTGAAAAAGTTGAAACCAGTAATCCTTCATGTAAACTACCACCCGGATAAACTTCCAAGGATGCAGGCAATTGTCGAGTTCTACTTCAACGGCAAGCAAGATGCGCTGGAACCTTTCCCTGACGGTTCTCAATGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0007275 GO:0008150 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0012505 GO:0016740 GO:0016757 GO:0021700 GO:0022622 GO:0030154 GO:0031410 GO:0031982 GO:0031984 GO:0032501 GO:0032502 GO:0042546 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0048364 GO:0048468 GO:0048469 GO:0048731 GO:0048764 GO:0048765 GO:0048856 GO:0048869 GO:0071554 GO:0071695 GO:0071840 GO:0080147 GO:0090558 GO:0090627 GO:0097708 GO:0098791 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko00514 map00514

Pfam Domains

Protein Families

Nucleotid_trans

Protein Analysis

437

Amino Acids

49.5

Weight (kDa)

7.76

Isoelectric Point (pI)

33.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nucleotid_trans	PF03407	189 - 409	3.6e-46	Nucleotide-diphospho-sugar transferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002462)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19360 AT1G19360 AT1G75110
fragaria_vesca	FvH4_2g08270 FvH4_2g08270 FvH4_2g08270 FvH4_2g08270 FvH4_2g40081
malus_domestica	MD08G1032600.v1.1 MD10G1080700.v1.1 MD15G1029300.v1.1
prunus_persica	Prupe.1G382100_v2.0.a1 Prupe.8G102000_v2.0.a1
pyrus_communis	pycom05g06040 pycom08g02590 pycom10g06390 pycom15g02600
rosa_chinensis	RchiOBHm_Chr6g0263151 RchiOBHm_Chr6g0300661
rosa_laevigata	RLG00000011313 RLG00000014368
rosa_multiflora	Rmu_co8387041.1_g000001 Rmu_sc0004226.1_g000014 Rmu_sc0014374.1_g000002 Rmu_sc0015149.1_g000002
rosa_roxburghii	Rroxscaffold_176G00430950 Rroxscaffold_7G00167540 Rroxscaffold_7G00204620
rosa_rugosa	Rorug06G0003900 Rorug06G0298200
rosa_samantha	Rh6AG123000 Rh6AG410900 Rh6BG118000 Rh6BG418100 Rh6CG116200 Rh6CG425600 Rh6DG104700 Rh6DG411000
rosa_wichuraiana	Rw0G002190 Rw6G010570 Rw6G035950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	936
Acc65I	GGTACC	1 cut(s)	389
AccB1I	GGYRCC	1 cut(s)	389
AccI	GTMKAC	1 cut(s)	636
AccII	CGCG	1 cut(s)	230
AciI	CCGC	4 cut(s)	75, 163, 228, 1086
AclWI	GGATC	4 cut(s)	67, 189, 339, 659
AcsI	RAATTY	2 cut(s)	508, 608
AcuI	CTGAAG	1 cut(s)	296
AdeI	CACNNNGTG	1 cut(s)	206
AfaI	GTAC	2 cut(s)	391, 1082
AfiI	CCNNNNNNNGG	4 cut(s)	234, 702, 893, 894
AhdI	GACNNNNNGTC	1 cut(s)	837
AjnI	CCWGG	3 cut(s)	55, 135, 186
AjuI	GAANNNNNNNTTGG	2 cut(s)	512, 544
AloI	GAACNNNNNNTCC	2 cut(s)	1047, 1079
AluBI	AGCT	7 cut(s)	195, 274, 307, 490, 620, 857, 982
AluI	AGCT	7 cut(s)	195, 274, 307, 490, 620, 857, 982
Alw26I	GTCTC	1 cut(s)	703
AlwI	GGATC	4 cut(s)	67, 189, 339, 659
AoxI	GGCC	3 cut(s)	149, 379, 1016
ApoI	RAATTY	2 cut(s)	508, 608
Asp718I	GGTACC	1 cut(s)	389
AspLEI	GCGC	1 cut(s)	1279
AspS9I	GGNCC	4 cut(s)	237, 380, 1033, 1141
AsuC2I	CCSGG	2 cut(s)	1077, 1217
AvaII	GGWCC	3 cut(s)	237, 1033, 1141
BanI	GGYRCC	1 cut(s)	389
BanII	GRGCYC	2 cut(s)	143, 904
BccI	CCATC	1 cut(s)	830
BceAI	ACGGC	2 cut(s)	680, 1279
BcgI	CGANNNNNNTGC	2 cut(s)	237, 271
BciT130I	CCWGG	3 cut(s)	57, 137, 188
BcnI	CCSGG	2 cut(s)	1077, 1217
BcoDI	GTCTC	1 cut(s)	703
BfaI	CTAG	3 cut(s)	546, 740, 1014
BglII	AGATCT	1 cut(s)	459
Bme1390I	CCNGG	5 cut(s)	57, 137, 188, 1077, 1217
Bme18I	GGWCC	3 cut(s)	237, 1033, 1141
BmeRI	GACNNNNNGTC	1 cut(s)	837
BmgT120I	GGNCC	4 cut(s)	237, 380, 1033, 1141
BmiI	GGNNCC	4 cut(s)	142, 391, 1034, 1284
BmrFI	CCNGG	5 cut(s)	57, 137, 188, 1077, 1217
BmsI	GCATC	6 cut(s)	257, 558, 726, 1156, 1224, 1264
BpmI	CTGGAG	1 cut(s)	170
BpuEI	CTTGAG	2 cut(s)	424, 742
BpuMI	CCSGG	2 cut(s)	1077, 1217
Bsa29I	ATCGAT	1 cut(s)	990
BsaBI	GATNNNNATC	1 cut(s)	1119
BsaJI	CCNNGG	4 cut(s)	136, 446, 1076, 1229
BsaXI	ACNNNNNCTCC	2 cut(s)	524, 554
Bsc4I	CCNNNNNNNGG	4 cut(s)	234, 702, 893, 894
Bse1I	ACTGG	1 cut(s)	1190
Bse8I	GATNNNNATC	1 cut(s)	1119
BseBI	CCWGG	3 cut(s)	57, 137, 188
BseCI	ATCGAT	1 cut(s)	990
BseDI	CCNNGG	4 cut(s)	136, 446, 1076, 1229
BseGI	GGATG	4 cut(s)	658, 769, 1072, 1239
BseJI	GATNNNNATC	1 cut(s)	1119
BseLI	CCNNNNNNNGG	4 cut(s)	234, 702, 893, 894
BseMII	CTCAG	1 cut(s)	714
BseNI	ACTGG	1 cut(s)	1190
BsgI	GTGCAG	1 cut(s)	308
Bsh1236I	CGCG	1 cut(s)	230
Bsh1285I	CGRYCG	1 cut(s)	994
BshFI	GGCC	3 cut(s)	151, 381, 1018
BshNI	GGYRCC	1 cut(s)	389
BshVI	ATCGAT	1 cut(s)	990
BsiEI	CGRYCG	1 cut(s)	994
BsiSI	CCGG	2 cut(s)	1076, 1217
BslFI	GGGAC	2 cut(s)	50, 1046
BslI	CCNNNNNNNGG	4 cut(s)	234, 702, 893, 894
BsmAI	GTCTC	1 cut(s)	703
BsmBI	CGTCTC	1 cut(s)	703
BsmFI	GGGAC	2 cut(s)	50, 1046
BsnI	GGCC	3 cut(s)	151, 381, 1018
Bsp1286I	GDGCHC	2 cut(s)	143, 904
Bsp143I	GATC	7 cut(s)	59, 181, 331, 459, 664, 987, 991
BspACI	CCGC	4 cut(s)	75, 163, 228, 1086
BspANI	GGCC	3 cut(s)	151, 381, 1018
BspCNI	CTCAG	1 cut(s)	713
BspDI	ATCGAT	1 cut(s)	990
BspFNI	CGCG	1 cut(s)	230
BspLI	GGNNCC	4 cut(s)	142, 391, 1034, 1284
BspPI	GGATC	4 cut(s)	67, 189, 339, 659
BspT107I	GGYRCC	1 cut(s)	389
BsrI	ACTGG	1 cut(s)	1190
BssECI	CCNNGG	4 cut(s)	136, 446, 1076, 1229
BssMI	GATC	7 cut(s)	59, 181, 331, 459, 664, 987, 991
BssNAI	GTATAC	1 cut(s)	637
BssT1I	CCWWGG	1 cut(s)	1229
Bst1107I	GTATAC	1 cut(s)	637
Bst2UI	CCWGG	3 cut(s)	57, 137, 188
Bst4CI	ACNGT	5 cut(s)	204, 394, 421, 1156, 1298
Bst6I	CTCTTC	1 cut(s)	1151
BstC8I	GCNNGC	6 cut(s)	272, 379, 453, 1088, 1239, 1268
BstDEI	CTNAG	1 cut(s)	700
BstEII	GGTNACC	1 cut(s)	686
BstF5I	GGATG	4 cut(s)	658, 769, 1072, 1239
BstFNI	CGCG	1 cut(s)	230
BstHHI	GCGC	1 cut(s)	1279
BstKTI	GATC	7 cut(s)	62, 184, 334, 462, 667, 990, 994
BstMAI	GTCTC	1 cut(s)	703
BstMBI	GATC	7 cut(s)	59, 181, 331, 459, 664, 987, 991
BstMCI	CGRYCG	1 cut(s)	994
BstMWI	GCNNNNNNNGC	2 cut(s)	908, 1276
BstNI	CCWGG	3 cut(s)	57, 137, 188
BstPI	GGTNACC	1 cut(s)	686
BstSCI	CCNGG	5 cut(s)	55, 135, 186, 1075, 1215
BstUI	CGCG	1 cut(s)	230
BstX2I	RGATCY	3 cut(s)	59, 181, 459
BstXI	CCANNNNNNTGG	1 cut(s)	577
BstYI	RGATCY	3 cut(s)	59, 181, 459
BstZ17I	GTATAC	1 cut(s)	637
Bsu15I	ATCGAT	1 cut(s)	990
BsuRI	GGCC	3 cut(s)	151, 381, 1018
BsuTUI	ATCGAT	1 cut(s)	990
BtsCI	GGATG	4 cut(s)	658, 769, 1072, 1239
BtsIMutI	CAGTG	1 cut(s)	209
Cac8I	GCNNGC	6 cut(s)	272, 379, 453, 1088, 1239, 1268
CfoI	GCGC	1 cut(s)	1279
Cfr13I	GGNCC	4 cut(s)	237, 380, 1033, 1141
ClaI	ATCGAT	1 cut(s)	990
CseI	GACGC	1 cut(s)	52
Csp6I	GTAC	2 cut(s)	390, 1081
CviAII	CATG	8 cut(s)	335, 341, 526, 692, 829, 1029, 1094, 1202
CviQI	GTAC	2 cut(s)	390, 1081
DdeI	CTNAG	1 cut(s)	700
DpnI	GATC	7 cut(s)	61, 183, 333, 461, 666, 989, 993
DpnII	GATC	7 cut(s)	59, 181, 331, 459, 664, 987, 991
DraIII	CACNNNGTG	1 cut(s)	206
DriI	GACNNNNNGTC	1 cut(s)	837
Eam1104I	CTCTTC	1 cut(s)	1151
Eam1105I	GACNNNNNGTC	1 cut(s)	837
EarI	CTCTTC	1 cut(s)	1151
Eco130I	CCWWGG	1 cut(s)	1229
Eco147I	AGGCCT	1 cut(s)	151
Eco24I	GRGCYC	2 cut(s)	143, 904
Eco47I	GGWCC	3 cut(s)	237, 1033, 1141
Eco57I	CTGAAG	1 cut(s)	296
Eco91I	GGTNACC	1 cut(s)	686
EcoO109I	RGGNCCY	1 cut(s)	1141
EcoO65I	GGTNACC	1 cut(s)	686
EcoRI	GAATTC	1 cut(s)	508
EcoRII	CCWGG	3 cut(s)	55, 135, 186
EcoT14I	CCWWGG	1 cut(s)	1229
EcoT38I	GRGCYC	2 cut(s)	143, 904
ErhI	CCWWGG	1 cut(s)	1229
Esp3I	CGTCTC	1 cut(s)	703
FaeI	CATG	8 cut(s)	338, 344, 529, 695, 832, 1032, 1097, 1205
FalI	AAGNNNNNCTT	2 cut(s)	1130, 1162
FaqI	GGGAC	2 cut(s)	50, 1046
FatI	CATG	8 cut(s)	334, 340, 525, 691, 828, 1028, 1093, 1201
FauI	CCCGC	1 cut(s)	1079
FblI	GTMKAC	1 cut(s)	636
FokI	GGATG	4 cut(s)	665, 776, 1059, 1246
FriOI	GRGCYC	2 cut(s)	143, 904
FspBI	CTAG	3 cut(s)	546, 740, 1014
GlaI	GCGC	1 cut(s)	1278
GsuI	CTGGAG	1 cut(s)	170
HaeIII	GGCC	3 cut(s)	151, 381, 1018
HapII	CCGG	2 cut(s)	1076, 1217
HgaI	GACGC	1 cut(s)	52
HhaI	GCGC	1 cut(s)	1279
Hin1II	CATG	8 cut(s)	338, 344, 529, 695, 832, 1032, 1097, 1205
Hin6I	GCGC	1 cut(s)	1277
HinP1I	GCGC	1 cut(s)	1277
HpaII	CCGG	2 cut(s)	1076, 1217
Hpy166II	GTNNAC	4 cut(s)	365, 543, 637, 1207
Hpy188III	TCNNGA	9 cut(s)	63, 70, 172, 428, 553, 721, 809, 1150, 1159
Hpy8I	GTNNAC	4 cut(s)	365, 543, 637, 1207
Hpy99I	CGWCG	1 cut(s)	113
HpyAV	CCTTC	4 cut(s)	274, 673, 1077, 1208
HpyCH4III	ACNGT	5 cut(s)	204, 394, 421, 1156, 1298
HpyCH4IV	ACGT	2 cut(s)	310, 627
HpyF10VI	GCNNNNNNNGC	2 cut(s)	908, 1276
HpyF3I	CTNAG	1 cut(s)	700
HpySE526I	ACGT	2 cut(s)	310, 627
Hsp92II	CATG	8 cut(s)	338, 344, 529, 695, 832, 1032, 1097, 1205
HspAI	GCGC	1 cut(s)	1277
KpnI	GGTACC	1 cut(s)	393
Kzo9I	GATC	7 cut(s)	59, 181, 331, 459, 664, 987, 991
LmnI	GCTCC	1 cut(s)	146
LweI	GCATC	6 cut(s)	257, 558, 726, 1156, 1224, 1264
MaeI	CTAG	3 cut(s)	546, 740, 1014
MaeII	ACGT	2 cut(s)	310, 627
MaeIII	GTNAC	3 cut(s)	70, 686, 839
MalI	GATC	7 cut(s)	61, 183, 333, 461, 666, 989, 993
MboI	GATC	7 cut(s)	59, 181, 331, 459, 664, 987, 991
MboII	GAAGA	5 cut(s)	289, 617, 688, 746, 1138
MfeI	CAATTG	3 cut(s)	669, 975, 1242
MflI	RGATCY	3 cut(s)	59, 181, 459
MhlI	GDGCHC	2 cut(s)	143, 904
MluCI	AATT	7 cut(s)	508, 571, 600, 608, 669, 975, 1242
MlyI	GAGTC	2 cut(s)	833, 1002
MmeI	TCCRAC	2 cut(s)	237, 510
MseI	TTAA	1 cut(s)	867
MslI	CAYNNNNRTG	2 cut(s)	202, 339
MspA1I	CMGCKG	1 cut(s)	1086
MspI	CCGG	2 cut(s)	1076, 1217
MspR9I	CCNGG	5 cut(s)	57, 137, 188, 1077, 1217
MunI	CAATTG	3 cut(s)	669, 975, 1242
MvaI	CCWGG	3 cut(s)	57, 137, 188
MvnI	CGCG	1 cut(s)	230
MwoI	GCNNNNNNNGC	2 cut(s)	908, 1276
NciI	CCSGG	2 cut(s)	1077, 1217
NdeII	GATC	7 cut(s)	59, 181, 331, 459, 664, 987, 991
NlaIII	CATG	8 cut(s)	338, 344, 529, 695, 832, 1032, 1097, 1205
NlaIV	GGNNCC	4 cut(s)	142, 391, 1034, 1284
NmeAIII	GCCGAG	1 cut(s)	78
NmuCI	GTSAC	2 cut(s)	70, 839
PceI	AGGCCT	1 cut(s)	151
PcsI	WCGNNNNNNNCGW	1 cut(s)	105
PfeI	GAWTC	9 cut(s)	66, 90, 132, 168, 209, 434, 442, 647, 812
PflFI	GACNNNGTC	1 cut(s)	46
PfoI	TCCNGGA	1 cut(s)	55
Ple19I	CGATCG	1 cut(s)	994
PleI	GAGTC	2 cut(s)	832, 1002
PpsI	GAGTC	2 cut(s)	832, 1002
PpuMI	RGGWCCY	1 cut(s)	1141
PsiI	TTATAA	1 cut(s)	936
Psp5II	RGGWCCY	1 cut(s)	1141
Psp6I	CCWGG	3 cut(s)	55, 135, 186
PspEI	GGTNACC	1 cut(s)	686
PspGI	CCWGG	3 cut(s)	55, 135, 186
PspN4I	GGNNCC	4 cut(s)	142, 391, 1034, 1284
PspPI	GGNCC	4 cut(s)	237, 380, 1033, 1141
PspPPI	RGGWCCY	1 cut(s)	1141
PsuI	RGATCY	3 cut(s)	59, 181, 459
PsyI	GACNNNGTC	1 cut(s)	46
PvuI	CGATCG	1 cut(s)	994
RsaI	GTAC	2 cut(s)	391, 1082
RsaNI	GTAC	2 cut(s)	390, 1081
RseI	CAYNNNNRTG	2 cut(s)	202, 339
SaqAI	TTAA	1 cut(s)	867
Sau3AI	GATC	7 cut(s)	59, 181, 331, 459, 664, 987, 991
Sau96I	GGNCC	4 cut(s)	237, 380, 1033, 1141
SchI	GAGTC	2 cut(s)	833, 1002
ScrFI	CCNGG	5 cut(s)	57, 137, 188, 1077, 1217
SduI	GDGCHC	2 cut(s)	143, 904
SfaNI	GCATC	6 cut(s)	257, 558, 726, 1156, 1224, 1264
SinI	GGWCC	3 cut(s)	237, 1033, 1141
SmiMI	CAYNNNNRTG	2 cut(s)	202, 339
SmlI	CTYRAG	2 cut(s)	403, 721
SmoI	CTYRAG	2 cut(s)	403, 721
Sse9I	AATT	7 cut(s)	508, 571, 600, 608, 669, 975, 1242
SseBI	AGGCCT	1 cut(s)	151
SsiI	CCGC	4 cut(s)	75, 163, 228, 1086
SspMI	CTAG	3 cut(s)	546, 740, 1014
StuI	AGGCCT	1 cut(s)	151
StyD4I	CCNGG	5 cut(s)	55, 135, 186, 1075, 1215
StyI	CCWWGG	1 cut(s)	1229
TaaI	ACNGT	5 cut(s)	204, 394, 421, 1156, 1298
TaiI	ACGT	2 cut(s)	313, 630
TaqI	TCGA	4 cut(s)	64, 808, 990, 1248
TasI	AATT	7 cut(s)	508, 571, 600, 608, 669, 975, 1242
TfiI	GAWTC	9 cut(s)	66, 90, 132, 168, 209, 434, 442, 647, 812
Tru1I	TTAA	1 cut(s)	867
Tru9I	TTAA	1 cut(s)	867
TscAI	CASTG	1 cut(s)	209
TseFI	GTSAC	2 cut(s)	70, 839
Tsp45I	GTSAC	2 cut(s)	70, 839
TspDTI	ATGAA	5 cut(s)	447, 612, 1082, 1145, 1190
TspGWI	ACGGA	3 cut(s)	144, 235, 427
TspRI	CASTG	1 cut(s)	209
Tth111I	GACNNNGTC	1 cut(s)	46
VpaK11BI	GGWCC	3 cut(s)	237, 1033, 1141
XapI	RAATTY	2 cut(s)	508, 608
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1026, 1108
XmiI	GTMKAC	1 cut(s)	636
XspI	CTAG	3 cut(s)	546, 740, 1014

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.