Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0002462

Physical Location & Seq

Genomic Coordinates Reverse (-)

2320328 .. 2323228

Gene Structure 2901 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1032600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1308 bp

ATGATGGCAGTTCGTCGAGAGGGGTCGTTGATGAGGGACAAGACGCAGTCGTTTCGTGGATCTCGAATCGTGACCGCCATTGTCATCGGAATCCTACTCGGCTCCGTCGTCGCCTACTTGTTTCCTCACGGGTTCCTGAGCTCCGATCGGCCTATCCAAAACCGCAGATTCGGGAAATCGGATCTCCAGATTAGCTCATCACAGTGTGAATCAACAGAACGGATTACCGCGTTGAGGTCCGATATTGCATCATTGTCGGACAAGAATGACGAGTTGAAGAAGGAGGTGCAGGAACTAACTGAAAAGCTACGTCTGTCTGAACAAGGAAAGGATCTTGCACATGAGCAGTTTTCTGTGTTAGGTAAACCACATAAGGCTGGCCCTTTTGGTACCGTCAAGGGCTTGAGAACTAACCCGACAGTTGTTCCTGATGAATCCTTGAATCCGAGGTTGGCAAAGATCTTGGAGGAAGTTGCAGTTCAAAAAGAGCTTATAGTTGCACTTGCGAATTCAAATGTGAAAGTCATGTTGGAGGTATGGTTTACTAGCATCAAGAAAGTTGGTATAACCAATTATCTGGTAGTAGGATTAGACGATGAAATTGAAGAATTTTGCAAAGCTAATGACGTTCCTGTATACAAGAGAGATTCGGATGAGGGTATTGATCCAATTGCGAAGAAGGGAGGTAACCATGCCGTCTCAGGGTTGAAGTTTCGCATCTTGAGGGAGTTTCTGCAACTCGGTTATAGTGTTCTTCTCTCGGATGTTGATATAGTATATTTGCAAAACCCGTTCAATCATCTTTATCGAGATTCTGATGTAGAGTCCATGACTGATGGTCACAATAACTATACAGCTTATGGATTTAATGATGTGTTTGACGAACCCTCTATGGGGTGGGCTCGTTATGCTCACACGATGAGGATATGGGTTTACAACTCTGGTTTCTTTTACATAAGACCTACGCTCCCTGCAATTGAGCTTTTGGATCGTGTGGCTGAACGACTCTCTAGGCCACAAAAAGCATGGGACCAAGCAGTATTCAACGAGGAACTATTTTTCCCTTCTCATCCGGGGTACAGTGGCCTTCATGCTTCCAAGAGAACCATGGATTTCTATCTCTTTATGAATAGCAAGGTCCTCTTCAAGACGGTCAGGAAAGACGCTAACTTGAAAAAGTTGAAACCAGTAATCCTTCATGTAAACTACCACCCGGATAAACTTCCAAGGATGCAGGCAATTATGGAGTTCTACTTCAACGGCAAGCAAGATGCGCTGGAACCTTTCCCTGACGGTTCTCAATGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0007275 GO:0008150 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0012505 GO:0016740 GO:0016757 GO:0021700 GO:0022622 GO:0030154 GO:0031410 GO:0031982 GO:0031984 GO:0032501 GO:0032502 GO:0042546 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0048364 GO:0048468 GO:0048469 GO:0048731 GO:0048764 GO:0048765 GO:0048856 GO:0048869 GO:0071554 GO:0071695 GO:0071840 GO:0080147 GO:0090558 GO:0090627 GO:0097708 GO:0098791 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko00514 map00514

Pfam Domains

Protein Families

Nucleotid_trans

Protein Analysis

436

Amino Acids

49.54

Weight (kDa)

7.75

Isoelectric Point (pI)

35.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nucleotid_trans	PF03407	189 - 408	4.1e-48	Nucleotide-diphospho-sugar transferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002462)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19360 AT1G19360 AT1G75110
fragaria_vesca	FvH4_2g08270 FvH4_2g08270 FvH4_2g08270 FvH4_2g08270 FvH4_2g40081
malus_domestica	MD08G1032600.v1.1 MD10G1080700.v1.1 MD15G1029300.v1.1
prunus_persica	Prupe.1G382100_v2.0.a1 Prupe.8G102000_v2.0.a1
pyrus_communis	pycom05g06040 pycom08g02590 pycom10g06390 pycom15g02600
rosa_chinensis	RchiOBHm_Chr6g0263151 RchiOBHm_Chr6g0300661
rosa_laevigata	RLG00000011313 RLG00000014368
rosa_multiflora	Rmu_co8387041.1_g000001 Rmu_sc0004226.1_g000014 Rmu_sc0014374.1_g000002 Rmu_sc0015149.1_g000002
rosa_roxburghii	Rroxscaffold_176G00430950 Rroxscaffold_7G00167540 Rroxscaffold_7G00204620
rosa_rugosa	Rorug06G0003900 Rorug06G0298200
rosa_samantha	Rh6AG123000 Rh6AG410900 Rh6BG118000 Rh6BG418100 Rh6CG116200 Rh6CG425600 Rh6DG104700 Rh6DG411000
rosa_wichuraiana	Rw0G002190 Rw6G010570 Rw6G035950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	389
AccB1I	GGYRCC	1 cut(s)	389
AccI	GTMKAC	1 cut(s)	636
AccII	CGCG	1 cut(s)	230
AciI	CCGC	3 cut(s)	75, 163, 228
AclWI	GGATC	5 cut(s)	67, 189, 339, 659, 996
AcsI	RAATTY	2 cut(s)	508, 608
AdeI	CACNNNGTG	1 cut(s)	206
AfaI	GTAC	2 cut(s)	391, 1079
AfiI	CCNNNNNNNGG	4 cut(s)	234, 702, 893, 894
AhdI	GACNNNNNGTC	1 cut(s)	837
AjuI	GAANNNNNNNTTGG	4 cut(s)	434, 466, 512, 544
AloI	GAACNNNNNNTCC	2 cut(s)	1044, 1076
AluBI	AGCT	7 cut(s)	141, 195, 307, 490, 620, 857, 982
AluI	AGCT	7 cut(s)	141, 195, 307, 490, 620, 857, 982
Alw21I	GWGCWC	1 cut(s)	143
Alw26I	GTCTC	1 cut(s)	703
AlwI	GGATC	5 cut(s)	67, 189, 339, 659, 996
AoxI	GGCC	4 cut(s)	149, 379, 1013, 1084
ApoI	RAATTY	2 cut(s)	508, 608
Asp718I	GGTACC	1 cut(s)	389
AspLEI	GCGC	1 cut(s)	1276
AspS9I	GGNCC	4 cut(s)	237, 380, 1030, 1138
AsuC2I	CCSGG	2 cut(s)	1074, 1214
AvaII	GGWCC	3 cut(s)	237, 1030, 1138
BanI	GGYRCC	1 cut(s)	389
BanII	GRGCYC	2 cut(s)	143, 904
Bbv12I	GWGCWC	1 cut(s)	143
BccI	CCATC	1 cut(s)	830
BceAI	ACGGC	2 cut(s)	680, 1276
BcgI	CGANNNNNNTGC	4 cut(s)	35, 69, 237, 271
BcnI	CCSGG	2 cut(s)	1074, 1214
BcoDI	GTCTC	1 cut(s)	703
BfaI	CTAG	2 cut(s)	546, 1011
BglII	AGATCT	1 cut(s)	459
Bme1390I	CCNGG	2 cut(s)	1074, 1214
Bme18I	GGWCC	3 cut(s)	237, 1030, 1138
BmeRI	GACNNNNNGTC	1 cut(s)	837
BmgT120I	GGNCC	4 cut(s)	237, 380, 1030, 1138
BmiI	GGNNCC	5 cut(s)	103, 134, 391, 1031, 1281
BmrFI	CCNGG	2 cut(s)	1074, 1214
BmsI	GCATC	5 cut(s)	257, 558, 726, 1221, 1261
BpmI	CTGGAG	1 cut(s)	170
Bpu10I	CCTNAGC	1 cut(s)	137
BpuEI	CTTGAG	2 cut(s)	424, 742
BpuMI	CCSGG	2 cut(s)	1074, 1214
BsaBI	GATNNNNATC	1 cut(s)	1116
BsaJI	CCNNGG	4 cut(s)	446, 1073, 1107, 1226
BsaXI	ACNNNNNCTCC	4 cut(s)	524, 554, 951, 981
Bsc4I	CCNNNNNNNGG	4 cut(s)	234, 702, 893, 894
Bse1I	ACTGG	1 cut(s)	1187
Bse8I	GATNNNNATC	1 cut(s)	1116
BseDI	CCNNGG	4 cut(s)	446, 1073, 1107, 1226
BseGI	GGATG	4 cut(s)	658, 769, 1069, 1236
BseJI	GATNNNNATC	1 cut(s)	1116
BseLI	CCNNNNNNNGG	4 cut(s)	234, 702, 893, 894
BseMII	CTCAG	2 cut(s)	128, 714
BseNI	ACTGG	1 cut(s)	1187
BsgI	GTGCAG	1 cut(s)	308
Bsh1236I	CGCG	1 cut(s)	230
Bsh1285I	CGRYCG	1 cut(s)	148
BshFI	GGCC	4 cut(s)	151, 381, 1015, 1086
BshNI	GGYRCC	1 cut(s)	389
BsiEI	CGRYCG	1 cut(s)	148
BsiHKAI	GWGCWC	1 cut(s)	143
BsiSI	CCGG	2 cut(s)	1073, 1214
BslFI	GGGAC	2 cut(s)	50, 1043
BslI	CCNNNNNNNGG	4 cut(s)	234, 702, 893, 894
BsmAI	GTCTC	1 cut(s)	703
BsmBI	CGTCTC	1 cut(s)	703
BsmFI	GGGAC	2 cut(s)	50, 1043
BsnI	GGCC	4 cut(s)	151, 381, 1015, 1086
Bsp1286I	GDGCHC	2 cut(s)	143, 904
Bsp143I	GATC	7 cut(s)	59, 145, 181, 331, 459, 664, 988
Bsp19I	CCATGG	1 cut(s)	1107
BspACI	CCGC	3 cut(s)	75, 163, 228
BspANI	GGCC	4 cut(s)	151, 381, 1015, 1086
BspCNI	CTCAG	2 cut(s)	129, 713
BspFNI	CGCG	1 cut(s)	230
BspLI	GGNNCC	5 cut(s)	103, 134, 391, 1031, 1281
BspPI	GGATC	5 cut(s)	67, 189, 339, 659, 996
BspT107I	GGYRCC	1 cut(s)	389
BsrI	ACTGG	1 cut(s)	1187
BssECI	CCNNGG	4 cut(s)	446, 1073, 1107, 1226
BssMI	GATC	7 cut(s)	59, 145, 181, 331, 459, 664, 988
BssNAI	GTATAC	1 cut(s)	637
BssT1I	CCWWGG	2 cut(s)	1107, 1226
Bst1107I	GTATAC	1 cut(s)	637
Bst4CI	ACNGT	6 cut(s)	204, 394, 421, 1082, 1153, 1295
Bst6I	CTCTTC	1 cut(s)	1148
BstC8I	GCNNGC	3 cut(s)	379, 1236, 1265
BstDEI	CTNAG	2 cut(s)	137, 700
BstDSI	CCRYGG	1 cut(s)	1107
BstEII	GGTNACC	1 cut(s)	686
BstF5I	GGATG	4 cut(s)	658, 769, 1069, 1236
BstFNI	CGCG	1 cut(s)	230
BstHHI	GCGC	1 cut(s)	1276
BstKTI	GATC	7 cut(s)	62, 148, 184, 334, 462, 667, 991
BstMAI	GTCTC	1 cut(s)	703
BstMBI	GATC	7 cut(s)	59, 145, 181, 331, 459, 664, 988
BstMCI	CGRYCG	1 cut(s)	148
BstMWI	GCNNNNNNNGC	2 cut(s)	908, 1273
BstPI	GGTNACC	1 cut(s)	686
BstSCI	CCNGG	2 cut(s)	1072, 1212
BstUI	CGCG	1 cut(s)	230
BstX2I	RGATCY	4 cut(s)	59, 181, 331, 459
BstXI	CCANNNNNNTGG	1 cut(s)	577
BstYI	RGATCY	4 cut(s)	59, 181, 331, 459
BstZ17I	GTATAC	1 cut(s)	637
BsuRI	GGCC	4 cut(s)	151, 381, 1015, 1086
BtgI	CCRYGG	1 cut(s)	1107
BtsCI	GGATG	4 cut(s)	658, 769, 1069, 1236
BtsIMutI	CAGTG	2 cut(s)	209, 1087
Cac8I	GCNNGC	3 cut(s)	379, 1236, 1265
CfoI	GCGC	1 cut(s)	1276
Cfr13I	GGNCC	4 cut(s)	237, 380, 1030, 1138
CseI	GACGC	2 cut(s)	52, 1172
Csp6I	GTAC	2 cut(s)	390, 1078
CviAII	CATG	8 cut(s)	341, 526, 692, 829, 1026, 1091, 1108, 1199
CviQI	GTAC	2 cut(s)	390, 1078
DdeI	CTNAG	2 cut(s)	137, 700
DpnI	GATC	7 cut(s)	61, 147, 183, 333, 461, 666, 990
DpnII	GATC	7 cut(s)	59, 145, 181, 331, 459, 664, 988
DraIII	CACNNNGTG	1 cut(s)	206
DriI	GACNNNNNGTC	1 cut(s)	837
Eam1104I	CTCTTC	1 cut(s)	1148
Eam1105I	GACNNNNNGTC	1 cut(s)	837
EarI	CTCTTC	1 cut(s)	1148
Ecl136II	GAGCTC	1 cut(s)	141
Eco130I	CCWWGG	2 cut(s)	1107, 1226
Eco24I	GRGCYC	2 cut(s)	143, 904
Eco47I	GGWCC	3 cut(s)	237, 1030, 1138
Eco53kI	GAGCTC	1 cut(s)	141
Eco91I	GGTNACC	1 cut(s)	686
EcoICRI	GAGCTC	1 cut(s)	141
EcoO109I	RGGNCCY	1 cut(s)	1138
EcoO65I	GGTNACC	1 cut(s)	686
EcoRI	GAATTC	1 cut(s)	508
EcoT14I	CCWWGG	2 cut(s)	1107, 1226
EcoT38I	GRGCYC	2 cut(s)	143, 904
ErhI	CCWWGG	2 cut(s)	1107, 1226
Esp3I	CGTCTC	1 cut(s)	703
FaeI	CATG	8 cut(s)	344, 529, 695, 832, 1029, 1094, 1111, 1202
FalI	AAGNNNNNCTT	2 cut(s)	1127, 1159
FaqI	GGGAC	2 cut(s)	50, 1043
FatI	CATG	8 cut(s)	340, 525, 691, 828, 1025, 1090, 1107, 1198
FblI	GTMKAC	1 cut(s)	636
FokI	GGATG	4 cut(s)	665, 776, 1056, 1243
FriOI	GRGCYC	2 cut(s)	143, 904
FspBI	CTAG	2 cut(s)	546, 1011
GlaI	GCGC	1 cut(s)	1275
GsuI	CTGGAG	1 cut(s)	170
HaeIII	GGCC	4 cut(s)	151, 381, 1015, 1086
HapII	CCGG	2 cut(s)	1073, 1214
HgaI	GACGC	2 cut(s)	52, 1172
HhaI	GCGC	1 cut(s)	1276
Hin1II	CATG	8 cut(s)	344, 529, 695, 832, 1029, 1094, 1111, 1202
Hin6I	GCGC	1 cut(s)	1274
HinP1I	GCGC	1 cut(s)	1274
HpaII	CCGG	2 cut(s)	1073, 1214
Hpy166II	GTNNAC	5 cut(s)	365, 543, 637, 934, 1204
Hpy8I	GTNNAC	5 cut(s)	365, 543, 637, 934, 1204
Hpy99I	CGWCG	3 cut(s)	18, 110, 113
HpyAV	CCTTC	5 cut(s)	274, 673, 1074, 1097, 1205
HpyCH4III	ACNGT	6 cut(s)	204, 394, 421, 1082, 1153, 1295
HpyCH4IV	ACGT	2 cut(s)	310, 627
HpyF10VI	GCNNNNNNNGC	2 cut(s)	908, 1273
HpyF3I	CTNAG	2 cut(s)	137, 700
HpySE526I	ACGT	2 cut(s)	310, 627
Hsp92II	CATG	8 cut(s)	344, 529, 695, 832, 1029, 1094, 1111, 1202
HspAI	GCGC	1 cut(s)	1274
KpnI	GGTACC	1 cut(s)	393
Kzo9I	GATC	7 cut(s)	59, 145, 181, 331, 459, 664, 988
LmnI	GCTCC	3 cut(s)	107, 146, 972
LweI	GCATC	5 cut(s)	257, 558, 726, 1221, 1261
MaeI	CTAG	2 cut(s)	546, 1011
MaeII	ACGT	2 cut(s)	310, 627
MaeIII	GTNAC	3 cut(s)	70, 686, 839
MalI	GATC	7 cut(s)	61, 147, 183, 333, 461, 666, 990
MboI	GATC	7 cut(s)	59, 145, 181, 331, 459, 664, 988
MboII	GAAGA	5 cut(s)	289, 617, 688, 746, 1135
MfeI	CAATTG	2 cut(s)	669, 975
MflI	RGATCY	4 cut(s)	59, 181, 331, 459
MhlI	GDGCHC	2 cut(s)	143, 904
MluCI	AATT	7 cut(s)	508, 571, 600, 608, 669, 975, 1239
MlyI	GAGTC	2 cut(s)	833, 999
MmeI	TCCRAC	2 cut(s)	237, 510
MseI	TTAA	1 cut(s)	867
MslI	CAYNNNNRTG	1 cut(s)	202
MspI	CCGG	2 cut(s)	1073, 1214
MspR9I	CCNGG	2 cut(s)	1074, 1214
MunI	CAATTG	2 cut(s)	669, 975
MvnI	CGCG	1 cut(s)	230
MwoI	GCNNNNNNNGC	2 cut(s)	908, 1273
NciI	CCSGG	2 cut(s)	1074, 1214
NcoI	CCATGG	1 cut(s)	1107
NdeII	GATC	7 cut(s)	59, 145, 181, 331, 459, 664, 988
NlaIII	CATG	8 cut(s)	344, 529, 695, 832, 1029, 1094, 1111, 1202
NlaIV	GGNNCC	5 cut(s)	103, 134, 391, 1031, 1281
NmeAIII	GCCGAG	1 cut(s)	78
NmuCI	GTSAC	2 cut(s)	70, 839
PcsI	WCGNNNNNNNCGW	2 cut(s)	61, 105
PfeI	GAWTC	8 cut(s)	66, 90, 168, 209, 434, 442, 647, 812
PflFI	GACNNNGTC	1 cut(s)	46
Ple19I	CGATCG	1 cut(s)	148
PleI	GAGTC	2 cut(s)	832, 999
PpsI	GAGTC	2 cut(s)	832, 999
PpuMI	RGGWCCY	1 cut(s)	1138
Psp124BI	GAGCTC	1 cut(s)	143
Psp5II	RGGWCCY	1 cut(s)	1138
PspEI	GGTNACC	1 cut(s)	686
PspN4I	GGNNCC	5 cut(s)	103, 134, 391, 1031, 1281
PspPI	GGNCC	4 cut(s)	237, 380, 1030, 1138
PspPPI	RGGWCCY	1 cut(s)	1138
PsuI	RGATCY	4 cut(s)	59, 181, 331, 459
PsyI	GACNNNGTC	1 cut(s)	46
PvuI	CGATCG	1 cut(s)	148
RsaI	GTAC	2 cut(s)	391, 1079
RsaNI	GTAC	2 cut(s)	390, 1078
RseI	CAYNNNNRTG	1 cut(s)	202
SacI	GAGCTC	1 cut(s)	143
SaqAI	TTAA	1 cut(s)	867
Sau3AI	GATC	7 cut(s)	59, 145, 181, 331, 459, 664, 988
Sau96I	GGNCC	4 cut(s)	237, 380, 1030, 1138
SchI	GAGTC	2 cut(s)	833, 999
ScrFI	CCNGG	2 cut(s)	1074, 1214
SduI	GDGCHC	2 cut(s)	143, 904
SfaNI	GCATC	5 cut(s)	257, 558, 726, 1221, 1261
SinI	GGWCC	3 cut(s)	237, 1030, 1138
SmiMI	CAYNNNNRTG	1 cut(s)	202
SmlI	CTYRAG	2 cut(s)	403, 721
SmoI	CTYRAG	2 cut(s)	403, 721
Sse9I	AATT	7 cut(s)	508, 571, 600, 608, 669, 975, 1239
SsiI	CCGC	3 cut(s)	75, 163, 228
SspMI	CTAG	2 cut(s)	546, 1011
SstI	GAGCTC	1 cut(s)	143
StyD4I	CCNGG	2 cut(s)	1072, 1212
StyI	CCWWGG	2 cut(s)	1107, 1226
TaaI	ACNGT	6 cut(s)	204, 394, 421, 1082, 1153, 1295
TaiI	ACGT	2 cut(s)	313, 630
TaqI	TCGA	3 cut(s)	16, 64, 808
TasI	AATT	7 cut(s)	508, 571, 600, 608, 669, 975, 1239
TfiI	GAWTC	8 cut(s)	66, 90, 168, 209, 434, 442, 647, 812
Tru1I	TTAA	1 cut(s)	867
Tru9I	TTAA	1 cut(s)	867
TscAI	CASTG	2 cut(s)	209, 1087
TseFI	GTSAC	2 cut(s)	70, 839
Tsp45I	GTSAC	2 cut(s)	70, 839
TspDTI	ATGAA	5 cut(s)	447, 612, 1079, 1142, 1187
TspGWI	ACGGA	2 cut(s)	94, 235
TspRI	CASTG	2 cut(s)	209, 1087
Tth111I	GACNNNGTC	1 cut(s)	46
VpaK11BI	GGWCC	3 cut(s)	237, 1030, 1138
XapI	RAATTY	2 cut(s)	508, 608
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1023, 1105
XmiI	GTMKAC	1 cut(s)	636
XspI	CTAG	2 cut(s)	546, 1011

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.