Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002291

Physical Location & Seq

Genomic Coordinates Reverse (-)

6756237 .. 6757420

Gene Structure 1184 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G19510.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

ATGGCCTCTAGTTCTATGAGCTCGAGCTCTTCTTGGACGTCTAAGCAAAACAAGATGTTCGAGAGGGCTTTAGCCGTTTACGATAAAGACACTCCCGACCGTTGGCAAAACGTGGCTAAAGCAGTTGGAAGTAAATCTGCAGAGGAAGTTAAACGTCACTACGACATCCTCGTTGAAGATCTCATGAACATCGAACAAGACTTAGTACCTTTGCCTAAATACAAAACCGTCGATGTTGGAAGTAAATCTAGAGGCATCGATGATTTTGATTTGAGGTTAATGAAGAATATGAGAATCCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0002791 GO:0003006 GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0005783 GO:0005788 GO:0005789 GO:0005886 GO:0006355 GO:0006417 GO:0006457 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009639 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009987 GO:0010114 GO:0010154 GO:0010468 GO:0010556 GO:0010608 GO:0012505 GO:0016020 GO:0016021 GO:0019219 GO:0019222 GO:0022414 GO:0031090 GO:0031224 GO:0031323 GO:0031326 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031984 GO:0032268 GO:0032501 GO:0032502 GO:0032879 GO:0032880 GO:0034248 GO:0042175 GO:0043021 GO:0043022 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050708 GO:0050789 GO:0050794 GO:0050896 GO:0051046 GO:0051049 GO:0051087 GO:0051171 GO:0051223 GO:0051246 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0070201 GO:0071944 GO:0080090 GO:0090087 GO:0098827 GO:0140110 GO:1903506 GO:1903530 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

100

Amino Acids

11.44

Weight (kDa)

7.95

Isoelectric Point (pI)

71.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding_2	PF23082	11 - 54	1.8e-07	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002291)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19510 AT1G75250 AT1G75250
fragaria_vesca	FvH4_2g08980 FvH4_2g39660
malus_domestica	MD08G1030400.v1.1 MD10G1074400.v1.1 MD15G1025600.v1.1
prunus_persica	Prupe.1G378000_v2.0.a1 Prupe.8G095800_v2.0.a1
pyrus_communis	pycom10g05830 pycom15g02200
rosa_chinensis	RchiOBHm_Chr3g0458061 RchiOBHm_Chr6g0264661 RchiOBHm_Chr6g0301221
rosa_laevigata	RLG00000014237 RLG00000025176
rosa_multiflora	Rmu_co8206514.1_g000001 Rmu_co8336827.1_g000001 Rmu_sc0000384.1_g000016 Rmu_sc0000546.1_g000016 Rmu_sc0002592.1_g000001
rosa_roxburghii	Rroxscaffold_171G00441330 Rroxscaffold_175G00432000 Rroxscaffold_6G00421310 Rroxscaffold_7G00203220
rosa_rugosa	Rorug03G0024600 Rorug06G0015100 Rorug06G0302500
rosa_samantha	Rh3AG085300 Rh3BG088000 Rh3CG088600 Rh3DG088900 Rh6AG134100 Rh6AG415800 Rh6BG131600 Rh6CG130300 Rh6CG430300 Rh6DG117300
rosa_wichuraiana	Rw0G012440 Rw6G011610 Rw6G036010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	41
AcyI	GRCGYC	1 cut(s)	38
AfaI	GTAC	1 cut(s)	207
AfiI	CCNNNNNNNGG	1 cut(s)	102
AgsI	TTSAA	1 cut(s)	176
AluBI	AGCT	2 cut(s)	21, 27
AluI	AGCT	2 cut(s)	21, 27
Alw21I	GWGCWC	2 cut(s)	23, 29
Ama87I	CYCGRG	1 cut(s)	22
AoxI	GGCC	1 cut(s)	3
AvaI	CYCGRG	1 cut(s)	22
BanII	GRGCYC	2 cut(s)	23, 29
Bbv12I	GWGCWC	2 cut(s)	23, 29
BceAI	ACGGC	1 cut(s)	59
BfaI	CTAG	2 cut(s)	9, 249
BfmI	CTRYAG	1 cut(s)	138
BglII	AGATCT	1 cut(s)	178
BmeT110I	CYCGRG	1 cut(s)	22
BmsI	GCATC	1 cut(s)	264
Bsa29I	ATCGAT	1 cut(s)	258
BsaHI	GRCGYC	1 cut(s)	38
Bsc4I	CCNNNNNNNGG	1 cut(s)	102
Bse1I	ACTGG	1 cut(s)	298
BseCI	ATCGAT	1 cut(s)	258
BseGI	GGATG	1 cut(s)	165
BseLI	CCNNNNNNNGG	1 cut(s)	102
BseNI	ACTGG	1 cut(s)	298
Bsh1285I	CGRYCG	1 cut(s)	100
BshFI	GGCC	1 cut(s)	5
BshVI	ATCGAT	1 cut(s)	258
BsiEI	CGRYCG	1 cut(s)	100
BsiHKAI	GWGCWC	2 cut(s)	23, 29
BsiHKCI	CYCGRG	1 cut(s)	22
BslI	CCNNNNNNNGG	1 cut(s)	102
BsnI	GGCC	1 cut(s)	5
BsoBI	CYCGRG	1 cut(s)	22
Bsp1286I	GDGCHC	2 cut(s)	23, 29
Bsp143I	GATC	1 cut(s)	178
BspANI	GGCC	1 cut(s)	5
BspDI	ATCGAT	1 cut(s)	258
BspHI	TCATGA	1 cut(s)	183
BspMAI	CTGCAG	1 cut(s)	142
BspQI	GCTCTTC	1 cut(s)	34
BsrI	ACTGG	1 cut(s)	298
BssMI	GATC	1 cut(s)	178
BssNI	GRCGYC	1 cut(s)	38
Bst4CI	ACNGT	2 cut(s)	101, 229
Bst6I	CTCTTC	1 cut(s)	34
BstACI	GRCGYC	1 cut(s)	38
BstDEI	CTNAG	2 cut(s)	42, 202
BstF5I	GGATG	1 cut(s)	165
BstKTI	GATC	1 cut(s)	181
BstMBI	GATC	1 cut(s)	178
BstMCI	CGRYCG	1 cut(s)	100
BstSFI	CTRYAG	1 cut(s)	138
BstX2I	RGATCY	1 cut(s)	178
BstYI	RGATCY	1 cut(s)	178
Bsu15I	ATCGAT	1 cut(s)	258
BsuRI	GGCC	1 cut(s)	5
BsuTUI	ATCGAT	1 cut(s)	258
BtsCI	GGATG	1 cut(s)	165
CciI	TCATGA	1 cut(s)	183
ClaI	ATCGAT	1 cut(s)	258
Csp6I	GTAC	1 cut(s)	206
CviAII	CATG	1 cut(s)	184
CviJI	RGCY	6 cut(s)	5, 21, 27, 68, 74, 116
CviKI_1	RGCY	6 cut(s)	5, 21, 27, 68, 74, 116
CviQI	GTAC	1 cut(s)	206
DdeI	CTNAG	2 cut(s)	42, 202
DpnI	GATC	1 cut(s)	180
DpnII	GATC	1 cut(s)	178
Eam1104I	CTCTTC	1 cut(s)	34
EarI	CTCTTC	1 cut(s)	34
Ecl136II	GAGCTC	2 cut(s)	21, 27
Eco24I	GRGCYC	2 cut(s)	23, 29
Eco53kI	GAGCTC	2 cut(s)	21, 27
Eco88I	CYCGRG	1 cut(s)	22
EcoICRI	GAGCTC	2 cut(s)	21, 27
EcoT38I	GRGCYC	2 cut(s)	23, 29
FaeI	CATG	1 cut(s)	187
FaiI	YATR	3 cut(s)	17, 185, 290
FatI	CATG	1 cut(s)	183
FokI	GGATG	1 cut(s)	152
FriOI	GRGCYC	2 cut(s)	23, 29
FspBI	CTAG	2 cut(s)	9, 249
HaeIII	GGCC	1 cut(s)	5
Hin1I	GRCGYC	1 cut(s)	38
Hin1II	CATG	1 cut(s)	187
HinfI	GANTC	1 cut(s)	294
Hpy166II	GTNNAC	1 cut(s)	79
Hpy188III	TCNNGA	4 cut(s)	61, 95, 184, 249
Hpy8I	GTNNAC	1 cut(s)	79
Hpy99I	CGWCG	1 cut(s)	233
HpyCH4III	ACNGT	2 cut(s)	101, 229
HpyCH4IV	ACGT	3 cut(s)	38, 111, 154
HpyCH4V	TGCA	1 cut(s)	140
HpyF3I	CTNAG	2 cut(s)	42, 202
HpySE526I	ACGT	3 cut(s)	38, 111, 154
Hsp92I	GRCGYC	1 cut(s)	38
Hsp92II	CATG	1 cut(s)	187
Kzo9I	GATC	1 cut(s)	178
LguI	GCTCTTC	1 cut(s)	34
LweI	GCATC	1 cut(s)	264
MaeI	CTAG	2 cut(s)	9, 249
MaeII	ACGT	3 cut(s)	38, 111, 154
MaeIII	GTNAC	1 cut(s)	155
MalI	GATC	1 cut(s)	180
MboI	GATC	1 cut(s)	178
MboII	GAAGA	3 cut(s)	21, 188, 295
MflI	RGATCY	1 cut(s)	178
MhlI	GDGCHC	2 cut(s)	23, 29
MmeI	TCCRAC	2 cut(s)	106, 217
MnlI	CCTC	6 cut(s)	16, 57, 136, 179, 245, 267
MseI	TTAA	2 cut(s)	150, 278
NdeII	GATC	1 cut(s)	178
NlaIII	CATG	1 cut(s)	187
NmuCI	GTSAC	1 cut(s)	155
PaeR7I	CTCGAG	1 cut(s)	22
PagI	TCATGA	1 cut(s)	183
PciSI	GCTCTTC	1 cut(s)	34
PcsI	WCGNNNNNNNCGW	1 cut(s)	168
PfeI	GAWTC	1 cut(s)	294
Psp124BI	GAGCTC	2 cut(s)	23, 29
PspXI	VCTCGAGB	1 cut(s)	22
PstI	CTGCAG	1 cut(s)	142
PsuI	RGATCY	1 cut(s)	178
RsaI	GTAC	1 cut(s)	207
RsaNI	GTAC	1 cut(s)	206
SacI	GAGCTC	2 cut(s)	23, 29
SapI	GCTCTTC	1 cut(s)	34
SaqAI	TTAA	2 cut(s)	150, 278
Sau3AI	GATC	1 cut(s)	178
SduI	GDGCHC	2 cut(s)	23, 29
SetI	ASST	7 cut(s)	23, 29, 41, 114, 157, 211, 278
SfaNI	GCATC	1 cut(s)	264
SfcI	CTRYAG	1 cut(s)	138
Sfr274I	CTCGAG	1 cut(s)	22
SlaI	CTCGAG	1 cut(s)	22
SmlI	CTYRAG	1 cut(s)	22
SmoI	CTYRAG	1 cut(s)	22
SspMI	CTAG	2 cut(s)	9, 249
SstI	GAGCTC	2 cut(s)	23, 29
TaaI	ACNGT	2 cut(s)	101, 229
TaiI	ACGT	3 cut(s)	41, 114, 157
TaqI	TCGA	5 cut(s)	23, 60, 192, 231, 258
TfiI	GAWTC	1 cut(s)	294
Tru1I	TTAA	2 cut(s)	150, 278
Tru9I	TTAA	2 cut(s)	150, 278
TseFI	GTSAC	1 cut(s)	155
Tsp45I	GTSAC	1 cut(s)	155
TspDTI	ATGAA	2 cut(s)	200, 296
XbaI	TCTAGA	1 cut(s)	248
XhoI	CTCGAG	1 cut(s)	22
XspI	CTAG	2 cut(s)	9, 249
ZraI	GACGTC	1 cut(s)	39

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.