Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0002291

Physical Location & Seq

Genomic Coordinates Forward (+)

1308376 .. 1308875

Gene Structure 500 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g02200.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGGCATCGGTTTCTTCCTCGAGGAATCTCAGCTCCTCGTGGACGCCGAAGCAGAACAAGTTGTTCGAGAAGGCGCTGGCTGTGTACGACAAGGACACGCAGGACCGCTGGCACAATGTGGCCAAGGCCGTGGGTGGAAAAACTGTGGAGGAAGTAAAGAGGCACTATGAGATTCTGGTGCATGATCTCATGCACATAGAATCCGGCCAAGTCCCTATACCGAATTATAAGGCCGCCGGAAGCAGCGGCAGCAACGGCAGCAACAAAGGATTTGGTGATGAGCAGAGGGTGTTAGAGATTTTGTACTGTTACAATGTCCATCGTAATTCGTGTCTAATGTCATATTATAATTTGAACATCCAACTCAAAACAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002791 GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0005783 GO:0005788 GO:0005789 GO:0005886 GO:0006355 GO:0006417 GO:0006457 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0010608 GO:0012505 GO:0016020 GO:0016021 GO:0019219 GO:0019222 GO:0031090 GO:0031224 GO:0031323 GO:0031326 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031984 GO:0032268 GO:0032879 GO:0032880 GO:0034248 GO:0042175 GO:0043021 GO:0043022 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0050708 GO:0050789 GO:0050794 GO:0051046 GO:0051049 GO:0051087 GO:0051171 GO:0051223 GO:0051246 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0070201 GO:0071944 GO:0080090 GO:0090087 GO:0098827 GO:0140110 GO:1903506 GO:1903530 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

126

Amino Acids

14.11

Weight (kDa)

8.87

Isoelectric Point (pI)

73.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002291)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19510 AT1G75250 AT1G75250
fragaria_vesca	FvH4_2g08980 FvH4_2g39660
malus_domestica	MD08G1030400.v1.1 MD10G1074400.v1.1 MD15G1025600.v1.1
prunus_persica	Prupe.1G378000_v2.0.a1 Prupe.8G095800_v2.0.a1
pyrus_communis	pycom10g05830 pycom15g02200
rosa_chinensis	RchiOBHm_Chr3g0458061 RchiOBHm_Chr6g0264661 RchiOBHm_Chr6g0301221
rosa_laevigata	RLG00000014237 RLG00000025176
rosa_multiflora	Rmu_co8206514.1_g000001 Rmu_co8336827.1_g000001 Rmu_sc0000384.1_g000016 Rmu_sc0000546.1_g000016 Rmu_sc0002592.1_g000001
rosa_roxburghii	Rroxscaffold_171G00441330 Rroxscaffold_175G00432000 Rroxscaffold_6G00421310 Rroxscaffold_7G00203220
rosa_rugosa	Rorug03G0024600 Rorug06G0015100 Rorug06G0302500
rosa_samantha	Rh3AG085300 Rh3BG088000 Rh3CG088600 Rh3DG088900 Rh6AG134100 Rh6AG415800 Rh6BG131600 Rh6CG130300 Rh6CG430300 Rh6DG117300
rosa_wichuraiana	Rw0G012440 Rw6G011610 Rw6G036010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	228, 348
AbsI	CCTCGAGG	1 cut(s)	19
AciI	CCGC	3 cut(s)	106, 234, 246
AcoI	YGGCCR	2 cut(s)	120, 205
AcyI	GRCGYC	1 cut(s)	44
AdeI	CACNNNGTG	1 cut(s)	118
AfaI	GTAC	2 cut(s)	86, 305
AgsI	TTSAA	1 cut(s)	355
AluBI	AGCT	1 cut(s)	33
AluI	AGCT	1 cut(s)	33
Ama87I	CYCGRG	1 cut(s)	19
AoxI	GGCC	4 cut(s)	120, 126, 205, 231
ApeKI	GCWGC	3 cut(s)	243, 249, 258
AspLEI	GCGC	1 cut(s)	76
AspS9I	GGNCC	1 cut(s)	103
AsuHPI	GGTGA	1 cut(s)	287
AvaI	CYCGRG	1 cut(s)	19
AvaII	GGWCC	1 cut(s)	103
BalI	TGGCCA	1 cut(s)	122
BauI	CACGAG	1 cut(s)	37
BbvI	GCAGC	3 cut(s)	255, 261, 270
BccI	CCATC	1 cut(s)	327
BceAI	ACGGC	2 cut(s)	113, 271
BfoI	RGCGCY	1 cut(s)	77
BisI	GCNGC	5 cut(s)	234, 244, 247, 250, 259
BlsI	GCNGC	5 cut(s)	235, 245, 248, 251, 260
Bme18I	GGWCC	1 cut(s)	103
BmeT110I	CYCGRG	1 cut(s)	19
BmgT120I	GGNCC	1 cut(s)	103
BmsI	GCATC	1 cut(s)	14
BsaHI	GRCGYC	1 cut(s)	44
BsaJI	CCNNGG	2 cut(s)	123, 129
BseDI	CCNNGG	2 cut(s)	123, 129
BseGI	GGATG	1 cut(s)	357
BseMII	CTCAG	1 cut(s)	43
BseRI	GAGGAG	1 cut(s)	25
BseXI	GCAGC	3 cut(s)	255, 261, 270
BshFI	GGCC	4 cut(s)	122, 128, 207, 233
BsiHKCI	CYCGRG	1 cut(s)	19
BsiSI	CCGG	2 cut(s)	204, 237
BslFI	GGGAC	1 cut(s)	197
BsmFI	GGGAC	1 cut(s)	197
BsnI	GGCC	4 cut(s)	122, 128, 207, 233
BsoBI	CYCGRG	1 cut(s)	19
Bsp143I	GATC	1 cut(s)	184
BspACI	CCGC	3 cut(s)	106, 234, 246
BspANI	GGCC	4 cut(s)	122, 128, 207, 233
BspCNI	CTCAG	1 cut(s)	42
BssECI	CCNNGG	2 cut(s)	123, 129
BssMI	GATC	1 cut(s)	184
BssNI	GRCGYC	1 cut(s)	44
BssSI	CACGAG	1 cut(s)	37
BssT1I	CCWWGG	1 cut(s)	123
Bst2BI	CACGAG	1 cut(s)	37
Bst4CI	ACNGT	2 cut(s)	145, 308
BstACI	GRCGYC	1 cut(s)	44
BstC8I	GCNNGC	2 cut(s)	78, 110
BstDEI	CTNAG	1 cut(s)	29
BstDSI	CCRYGG	1 cut(s)	129
BstF5I	GGATG	1 cut(s)	357
BstH2I	RGCGCY	1 cut(s)	77
BstHHI	GCGC	1 cut(s)	76
BstKTI	GATC	1 cut(s)	187
BstMBI	GATC	1 cut(s)	184
BstMWI	GCNNNNNNNGC	3 cut(s)	249, 255, 258
BstV1I	GCAGC	3 cut(s)	255, 261, 270
BstXI	CCANNNNNNTGG	1 cut(s)	130
BsuRI	GGCC	4 cut(s)	122, 128, 207, 233
BtgI	CCRYGG	1 cut(s)	129
BtsCI	GGATG	1 cut(s)	357
Cac8I	GCNNGC	2 cut(s)	78, 110
CfoI	GCGC	1 cut(s)	76
Cfr13I	GGNCC	1 cut(s)	103
CseI	GACGC	1 cut(s)	52
Csp6I	GTAC	2 cut(s)	85, 304
CviAII	CATG	2 cut(s)	182, 190
CviJI	RGCY	6 cut(s)	33, 80, 122, 128, 207, 233
CviKI_1	RGCY	6 cut(s)	33, 80, 122, 128, 207, 233
CviQI	GTAC	2 cut(s)	85, 304
DdeI	CTNAG	1 cut(s)	29
DpnI	GATC	1 cut(s)	186
DpnII	GATC	1 cut(s)	184
DraIII	CACNNNGTG	1 cut(s)	118
EaeI	YGGCCR	2 cut(s)	120, 205
Eco130I	CCWWGG	1 cut(s)	123
Eco47I	GGWCC	1 cut(s)	103
Eco88I	CYCGRG	1 cut(s)	19
EcoT14I	CCWWGG	1 cut(s)	123
ErhI	CCWWGG	1 cut(s)	123
FaeI	CATG	2 cut(s)	185, 193
FaiI	YATR	8 cut(s)	168, 183, 191, 197, 218, 228, 343, 348
FaqI	GGGAC	1 cut(s)	197
FatI	CATG	2 cut(s)	181, 189
Fnu4HI	GCNGC	5 cut(s)	234, 244, 247, 250, 259
FokI	GGATG	1 cut(s)	344
Fsp4HI	GCNGC	5 cut(s)	234, 244, 247, 250, 259
GlaI	GCGC	1 cut(s)	75
GluI	GCNGC	5 cut(s)	234, 244, 247, 250, 259
HaeII	RGCGCY	1 cut(s)	77
HaeIII	GGCC	4 cut(s)	122, 128, 207, 233
HapII	CCGG	2 cut(s)	204, 237
HgaI	GACGC	1 cut(s)	52
HhaI	GCGC	1 cut(s)	76
Hin1I	GRCGYC	1 cut(s)	44
Hin1II	CATG	2 cut(s)	185, 193
Hin6I	GCGC	1 cut(s)	74
HinP1I	GCGC	1 cut(s)	74
HinfI	GANTC	3 cut(s)	25, 172, 200
HpaII	CCGG	2 cut(s)	204, 237
HphI	GGTGA	1 cut(s)	287
Hpy166II	GTNNAC	2 cut(s)	42, 85
Hpy188III	TCNNGA	1 cut(s)	67
Hpy8I	GTNNAC	2 cut(s)	42, 85
HpyAV	CCTTC	1 cut(s)	64
HpyCH4III	ACNGT	2 cut(s)	145, 308
HpyCH4V	TGCA	2 cut(s)	181, 193
HpyF10VI	GCNNNNNNNGC	3 cut(s)	249, 255, 258
HpyF3I	CTNAG	1 cut(s)	29
Hsp92I	GRCGYC	1 cut(s)	44
Hsp92II	CATG	2 cut(s)	185, 193
HspAI	GCGC	1 cut(s)	74
Kzo9I	GATC	1 cut(s)	184
LmnI	GCTCC	1 cut(s)	38
LpnPI	CCDG	6 cut(s)	62, 86, 94, 161, 217, 250
Lsp1109I	GCAGC	3 cut(s)	255, 261, 270
LweI	GCATC	1 cut(s)	14
MaeIII	GTNAC	1 cut(s)	308
MalI	GATC	1 cut(s)	186
MboI	GATC	1 cut(s)	184
MboII	GAAGA	1 cut(s)	6
MlsI	TGGCCA	1 cut(s)	122
MluCI	AATT	4 cut(s)	223, 325, 349, 373
MluNI	TGGCCA	1 cut(s)	122
MnlI	CCTC	6 cut(s)	15, 28, 46, 142, 153, 279
Mox20I	TGGCCA	1 cut(s)	122
MscI	TGGCCA	1 cut(s)	122
Msp20I	TGGCCA	1 cut(s)	122
MspA1I	CMGCKG	2 cut(s)	108, 246
MspI	CCGG	2 cut(s)	204, 237
MwoI	GCNNNNNNNGC	3 cut(s)	249, 255, 258
NdeII	GATC	1 cut(s)	184
NlaIII	CATG	2 cut(s)	185, 193
PaeR7I	CTCGAG	1 cut(s)	19
PcsI	WCGNNNNNNNCGW	1 cut(s)	44
PfeI	GAWTC	3 cut(s)	25, 172, 200
PkrI	GCNGC	5 cut(s)	235, 245, 248, 251, 260
PsiI	TTATAA	2 cut(s)	228, 348
PspPI	GGNCC	1 cut(s)	103
PspXI	VCTCGAGB	1 cut(s)	19
RsaI	GTAC	2 cut(s)	86, 305
RsaNI	GTAC	2 cut(s)	85, 304
SatI	GCNGC	5 cut(s)	234, 244, 247, 250, 259
Sau3AI	GATC	1 cut(s)	184
Sau96I	GGNCC	1 cut(s)	103
SetI	ASST	1 cut(s)	35
SfaNI	GCATC	1 cut(s)	14
Sfr274I	CTCGAG	1 cut(s)	19
SinI	GGWCC	1 cut(s)	103
SlaI	CTCGAG	1 cut(s)	19
SmlI	CTYRAG	1 cut(s)	19
SmoI	CTYRAG	1 cut(s)	19
Sse9I	AATT	4 cut(s)	223, 325, 349, 373
SsiI	CCGC	3 cut(s)	106, 234, 246
StyI	CCWWGG	1 cut(s)	123
TaaI	ACNGT	2 cut(s)	145, 308
TaqI	TCGA	2 cut(s)	20, 66
TasI	AATT	4 cut(s)	223, 325, 349, 373
TatI	WGTACW	1 cut(s)	303
TauI	GCSGC	2 cut(s)	236, 249
TfiI	GAWTC	3 cut(s)	25, 172, 200
TseI	GCWGC	3 cut(s)	243, 249, 258
VpaK11BI	GGWCC	1 cut(s)	103
XhoI	CTCGAG	1 cut(s)	19

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.