Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0002291

Physical Location & Seq

Genomic Coordinates Reverse (-)

7897318 .. 7898232

Gene Structure 915 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g08980.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

ATGGCTTCAAGCTCTCTGAAAAGACAAGACTCAAACAGCCGCTGGACACCAAAGCAGAACAAGGTGTTTGAGAGGGCTCTGGCTCTTTACGACAAGGATACCCCGGACCGGTGGCAGAATGTGGCCAAGGCTGTTGGCGGGAATAAAACACCCGAGGAAGTGAAGAGGCACTATGATATCCTCCTTGAGGATCTCCGGCAAATTGAGTCCGGCCAGGTTCCTATTCCTAACTACAAGTCCCTTGGAATCACCACCACAAAAGTTGATGAGGAAGAAAGGCTTCTGAAGTATCTTAAGCTGCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

102

Amino Acids

11.72

Weight (kDa)

9.19

Isoelectric Point (pI)

74.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding_2	PF23082	14 - 58	5.3e-08	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	14 - 58	9.1e-07	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002291)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19510 AT1G75250 AT1G75250
fragaria_vesca	FvH4_2g08980 FvH4_2g39660
malus_domestica	MD08G1030400.v1.1 MD10G1074400.v1.1 MD15G1025600.v1.1
prunus_persica	Prupe.1G378000_v2.0.a1 Prupe.8G095800_v2.0.a1
pyrus_communis	pycom10g05830 pycom15g02200
rosa_chinensis	RchiOBHm_Chr3g0458061 RchiOBHm_Chr6g0264661 RchiOBHm_Chr6g0301221
rosa_laevigata	RLG00000014237 RLG00000025176
rosa_multiflora	Rmu_co8206514.1_g000001 Rmu_co8336827.1_g000001 Rmu_sc0000384.1_g000016 Rmu_sc0000546.1_g000016 Rmu_sc0002592.1_g000001
rosa_roxburghii	Rroxscaffold_171G00441330 Rroxscaffold_175G00432000 Rroxscaffold_6G00421310 Rroxscaffold_7G00203220
rosa_rugosa	Rorug03G0024600 Rorug06G0015100 Rorug06G0302500
rosa_samantha	Rh3AG085300 Rh3BG088000 Rh3CG088600 Rh3DG088900 Rh6AG134100 Rh6AG415800 Rh6BG131600 Rh6CG130300 Rh6CG430300 Rh6DG117300
rosa_wichuraiana	Rw0G012440 Rw6G011610 Rw6G036010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	40, 138
AclWI	GGATC	1 cut(s)	198
AcoI	YGGCCR	2 cut(s)	123, 211
AcuI	CTGAAG	1 cut(s)	305
AfiI	CCNNNNNNNGG	2 cut(s)	108, 187
AflII	CTTAAG	1 cut(s)	293
AgeI	ACCGGT	1 cut(s)	108
AgsI	TTSAA	1 cut(s)	9
AjnI	CCWGG	1 cut(s)	213
AluBI	AGCT	2 cut(s)	12, 298
AluI	AGCT	2 cut(s)	12, 298
AlwI	GGATC	1 cut(s)	198
AlwNI	CAGNNNCTG	1 cut(s)	42
Ama87I	CYCGRG	1 cut(s)	152
AoxI	GGCC	2 cut(s)	123, 211
ApeKI	GCWGC	1 cut(s)	298
AsiGI	ACCGGT	1 cut(s)	108
Asp700I	GAANNNNTTC	1 cut(s)	279
AspS9I	GGNCC	1 cut(s)	106
AsuC2I	CCSGG	1 cut(s)	104
AsuHPI	GGTGA	1 cut(s)	241
AvaI	CYCGRG	1 cut(s)	152
AvaII	GGWCC	1 cut(s)	106
BalI	TGGCCA	1 cut(s)	125
BanII	GRGCYC	1 cut(s)	79
BbvI	GCAGC	1 cut(s)	285
BciT130I	CCWGG	1 cut(s)	215
BciVI	GTATCC	1 cut(s)	91
BcnI	CCSGG	1 cut(s)	104
BfmI	CTRYAG	1 cut(s)	299
BfrI	CTTAAG	1 cut(s)	293
BfuI	GTATCC	1 cut(s)	91
BisI	GCNGC	2 cut(s)	40, 299
BlsI	GCNGC	2 cut(s)	41, 300
Bme1390I	CCNGG	2 cut(s)	104, 215
Bme18I	GGWCC	1 cut(s)	106
BmeT110I	CYCGRG	1 cut(s)	152
BmgT120I	GGNCC	1 cut(s)	106
BmiI	GGNNCC	1 cut(s)	219
BmrFI	CCNGG	2 cut(s)	104, 215
BpuEI	CTTGAG	1 cut(s)	206
BpuMI	CCSGG	1 cut(s)	104
BsaJI	CCNNGG	4 cut(s)	102, 126, 153, 241
BsaWI	WCCGGW	1 cut(s)	108
Bsc4I	CCNNNNNNNGG	2 cut(s)	108, 187
Bse118I	RCCGGY	1 cut(s)	108
BseBI	CCWGG	1 cut(s)	215
BseDI	CCNNGG	4 cut(s)	102, 126, 153, 241
BseLI	CCNNNNNNNGG	2 cut(s)	108, 187
BseXI	GCAGC	1 cut(s)	285
BshFI	GGCC	2 cut(s)	125, 213
BshTI	ACCGGT	1 cut(s)	108
BsiHKCI	CYCGRG	1 cut(s)	152
BsiSI	CCGG	4 cut(s)	104, 109, 196, 210
BslFI	GGGAC	1 cut(s)	223
BslI	CCNNNNNNNGG	2 cut(s)	108, 187
BsmFI	GGGAC	1 cut(s)	223
BsnI	GGCC	2 cut(s)	125, 213
BsoBI	CYCGRG	1 cut(s)	152
Bsp1286I	GDGCHC	1 cut(s)	79
Bsp143I	GATC	1 cut(s)	190
BspACI	CCGC	2 cut(s)	40, 138
BspANI	GGCC	2 cut(s)	125, 213
BspLI	GGNNCC	1 cut(s)	219
BspMAI	CTGCAG	1 cut(s)	303
BspPI	GGATC	1 cut(s)	198
BspTI	CTTAAG	1 cut(s)	293
BsrFI	RCCGGY	1 cut(s)	108
BssAI	RCCGGY	1 cut(s)	108
BssECI	CCNNGG	4 cut(s)	102, 126, 153, 241
BssMI	GATC	1 cut(s)	190
BssT1I	CCWWGG	2 cut(s)	126, 241
Bst2UI	CCWGG	1 cut(s)	215
Bst6I	CTCTTC	1 cut(s)	158
BstAFI	CTTAAG	1 cut(s)	293
BstENI	CCTNNNNNAGG	1 cut(s)	185
BstKTI	GATC	1 cut(s)	193
BstMBI	GATC	1 cut(s)	190
BstNI	CCWGG	1 cut(s)	215
BstSCI	CCNGG	2 cut(s)	102, 213
BstSFI	CTRYAG	1 cut(s)	299
BstV1I	GCAGC	1 cut(s)	285
BstX2I	RGATCY	1 cut(s)	190
BstYI	RGATCY	1 cut(s)	190
BsuI	GTATCC	1 cut(s)	91
BsuRI	GGCC	2 cut(s)	125, 213
CaiI	CAGNNNCTG	1 cut(s)	42
Cfr10I	RCCGGY	1 cut(s)	108
Cfr13I	GGNCC	1 cut(s)	106
CpoI	CGGWCCG	1 cut(s)	106
CspAI	ACCGGT	1 cut(s)	108
CspCI	CAANNNNNGTGG	2 cut(s)	244, 279
CspI	CGGWCCG	1 cut(s)	106
DpnI	GATC	1 cut(s)	192
DpnII	GATC	1 cut(s)	190
EaeI	YGGCCR	2 cut(s)	123, 211
Eam1104I	CTCTTC	1 cut(s)	158
EarI	CTCTTC	1 cut(s)	158
Eco130I	CCWWGG	2 cut(s)	126, 241
Eco24I	GRGCYC	1 cut(s)	79
Eco32I	GATATC	1 cut(s)	178
Eco47I	GGWCC	1 cut(s)	106
Eco57I	CTGAAG	1 cut(s)	305
Eco88I	CYCGRG	1 cut(s)	152
EcoNI	CCTNNNNNAGG	1 cut(s)	185
EcoRII	CCWGG	1 cut(s)	213
EcoRV	GATATC	1 cut(s)	178
EcoT14I	CCWWGG	2 cut(s)	126, 241
EcoT38I	GRGCYC	1 cut(s)	79
ErhI	CCWWGG	2 cut(s)	126, 241
FaiI	YATR	1 cut(s)	174
FalI	AAGNNNNNCTT	2 cut(s)	264, 296
FaqI	GGGAC	1 cut(s)	223
FauI	CCCGC	1 cut(s)	131
Fnu4HI	GCNGC	2 cut(s)	40, 299
FriOI	GRGCYC	1 cut(s)	79
Fsp4HI	GCNGC	2 cut(s)	40, 299
GluI	GCNGC	2 cut(s)	40, 299
HaeIII	GGCC	2 cut(s)	125, 213
HapII	CCGG	4 cut(s)	104, 109, 196, 210
HinfI	GANTC	3 cut(s)	29, 206, 246
HpaII	CCGG	4 cut(s)	104, 109, 196, 210
HphI	GGTGA	1 cut(s)	241
Hpy188I	TCNGA	2 cut(s)	18, 285
HpyCH4V	TGCA	1 cut(s)	301
Kzo9I	GATC	1 cut(s)	190
LpnPI	CCDG	8 cut(s)	28, 65, 117, 122, 200, 209, 223, 227
Lsp1109I	GCAGC	1 cut(s)	285
MalI	GATC	1 cut(s)	192
MboI	GATC	1 cut(s)	190
MboII	GAAGA	2 cut(s)	175, 284
MflI	RGATCY	1 cut(s)	190
MhlI	GDGCHC	1 cut(s)	79
MlsI	TGGCCA	1 cut(s)	125
MluCI	AATT	1 cut(s)	201
MluNI	TGGCCA	1 cut(s)	125
MlyI	GAGTC	2 cut(s)	23, 215
MnlI	CCTC	6 cut(s)	66, 148, 159, 181, 191, 262
Mox20I	TGGCCA	1 cut(s)	125
MroXI	GAANNNNTTC	1 cut(s)	279
MscI	TGGCCA	1 cut(s)	125
MseI	TTAA	1 cut(s)	294
Msp20I	TGGCCA	1 cut(s)	125
MspA1I	CMGCKG	1 cut(s)	42
MspCI	CTTAAG	1 cut(s)	293
MspI	CCGG	4 cut(s)	104, 109, 196, 210
MspR9I	CCNGG	2 cut(s)	104, 215
MvaI	CCWGG	1 cut(s)	215
NciI	CCSGG	1 cut(s)	104
NdeII	GATC	1 cut(s)	190
NlaIV	GGNNCC	1 cut(s)	219
PdmI	GAANNNNTTC	1 cut(s)	279
PfeI	GAWTC	1 cut(s)	246
PinAI	ACCGGT	1 cut(s)	108
PkrI	GCNGC	2 cut(s)	41, 300
PleI	GAGTC	2 cut(s)	23, 214
PpsI	GAGTC	2 cut(s)	23, 214
Psp6I	CCWGG	1 cut(s)	213
PspGI	CCWGG	1 cut(s)	213
PspN4I	GGNNCC	1 cut(s)	219
PspPI	GGNCC	1 cut(s)	106
PstI	CTGCAG	1 cut(s)	303
PstNI	CAGNNNCTG	1 cut(s)	42
PsuI	RGATCY	1 cut(s)	190
Rsr2I	CGGWCCG	1 cut(s)	106
RsrII	CGGWCCG	1 cut(s)	106
SaqAI	TTAA	1 cut(s)	294
SatI	GCNGC	2 cut(s)	40, 299
Sau3AI	GATC	1 cut(s)	190
Sau96I	GGNCC	1 cut(s)	106
SchI	GAGTC	2 cut(s)	23, 215
ScrFI	CCNGG	2 cut(s)	104, 215
SduI	GDGCHC	1 cut(s)	79
SetI	ASST	4 cut(s)	14, 66, 219, 300
SfcI	CTRYAG	1 cut(s)	299
SinI	GGWCC	1 cut(s)	106
SmlI	CTYRAG	2 cut(s)	185, 293
SmoI	CTYRAG	2 cut(s)	185, 293
Sse9I	AATT	1 cut(s)	201
SsiI	CCGC	2 cut(s)	40, 138
StyD4I	CCNGG	2 cut(s)	102, 213
StyI	CCWWGG	2 cut(s)	126, 241
TasI	AATT	1 cut(s)	201
TauI	GCSGC	1 cut(s)	42
TfiI	GAWTC	1 cut(s)	246
Tru1I	TTAA	1 cut(s)	294
Tru9I	TTAA	1 cut(s)	294
TseI	GCWGC	1 cut(s)	298
Vha464I	CTTAAG	1 cut(s)	293
VpaK11BI	GGWCC	1 cut(s)	106
XagI	CCTNNNNNAGG	1 cut(s)	185
XmnI	GAANNNNTTC	1 cut(s)	279

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.