Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0002291

Physical Location & Seq

Genomic Coordinates Forward (+)

6864716 .. 6865401

Gene Structure 686 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG088900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 258 bp

ATGGCATCCCTGACTTCGTCGCGGAATTCCAACTCCTCCTGGACGCTGAAGCAGAACAAGCTGTTTGAGAATGCCCTGGCTGTGTACGACAAGGACACACAGGACCGGTGGCACAATTTGGCCAAGGCTGTGGGTGGAAAATCAGCCGAGGAAGTCAAGAGGCACTATGAGATTCTGGTGCAGGATCTCATGCATATAGAATCTGGTCAAGTCGCTCTACCCAATTACAGGGCCACTGGAAGCAACTCTAGACTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002791 GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0005783 GO:0005788 GO:0005789 GO:0005886 GO:0006355 GO:0006417 GO:0006457 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0010608 GO:0012505 GO:0016020 GO:0016021 GO:0019219 GO:0019222 GO:0031090 GO:0031224 GO:0031323 GO:0031326 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031984 GO:0032268 GO:0032879 GO:0032880 GO:0034248 GO:0042175 GO:0043021 GO:0043022 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0050708 GO:0050789 GO:0050794 GO:0051046 GO:0051049 GO:0051087 GO:0051171 GO:0051223 GO:0051246 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0070201 GO:0071944 GO:0080090 GO:0090087 GO:0098827 GO:0140110 GO:1903506 GO:1903530 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

85

Amino Acids

9.58

Weight (kDa)

9.1

Isoelectric Point (pI)

73.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002291)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19510 AT1G75250 AT1G75250
fragaria_vesca	FvH4_2g08980 FvH4_2g39660
malus_domestica	MD08G1030400.v1.1 MD10G1074400.v1.1 MD15G1025600.v1.1
prunus_persica	Prupe.1G378000_v2.0.a1 Prupe.8G095800_v2.0.a1
pyrus_communis	pycom10g05830 pycom15g02200
rosa_chinensis	RchiOBHm_Chr3g0458061 RchiOBHm_Chr6g0264661 RchiOBHm_Chr6g0301221
rosa_laevigata	RLG00000014237 RLG00000025176
rosa_multiflora	Rmu_co8206514.1_g000001 Rmu_co8336827.1_g000001 Rmu_sc0000384.1_g000016 Rmu_sc0000546.1_g000016 Rmu_sc0002592.1_g000001
rosa_roxburghii	Rroxscaffold_171G00441330 Rroxscaffold_175G00432000 Rroxscaffold_6G00421310 Rroxscaffold_7G00203220
rosa_rugosa	Rorug03G0024600 Rorug06G0015100 Rorug06G0302500
rosa_samantha	Rh3AG085300 Rh3BG088000 Rh3CG088600 Rh3DG088900 Rh6AG134100 Rh6AG415800 Rh6BG131600 Rh6CG130300 Rh6CG430300 Rh6DG117300
rosa_wichuraiana	Rw0G012440 Rw6G011610 Rw6G036010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	22
AciI	CCGC	1 cut(s)	22
AclWI	GGATC	1 cut(s)	192
AcoI	YGGCCR	1 cut(s)	120
AcsI	RAATTY	1 cut(s)	25
AcuI	CTGAAG	1 cut(s)	68
AfaI	GTAC	1 cut(s)	86
AfiI	CCNNNNNNNGG	1 cut(s)	228
AgeI	ACCGGT	1 cut(s)	105
AjnI	CCWGG	2 cut(s)	38, 75
AluBI	AGCT	1 cut(s)	61
AluI	AGCT	1 cut(s)	61
AlwI	GGATC	1 cut(s)	192
AoxI	GGCC	2 cut(s)	120, 231
ApoI	RAATTY	1 cut(s)	25
AsiGI	ACCGGT	1 cut(s)	105
AspS9I	GGNCC	2 cut(s)	103, 231
AvaII	GGWCC	1 cut(s)	103
BalI	TGGCCA	1 cut(s)	122
BciT130I	CCWGG	2 cut(s)	40, 77
BfaI	CTAG	2 cut(s)	249, 256
Bme1390I	CCNGG	2 cut(s)	40, 77
Bme18I	GGWCC	1 cut(s)	103
BmgT120I	GGNCC	2 cut(s)	103, 231
BmrFI	CCNGG	2 cut(s)	40, 77
BmsI	GCATC	1 cut(s)	14
BsaJI	CCNNGG	3 cut(s)	75, 123, 147
BsaWI	WCCGGW	1 cut(s)	105
Bsc4I	CCNNNNNNNGG	1 cut(s)	228
Bse118I	RCCGGY	1 cut(s)	105
Bse1I	ACTGG	1 cut(s)	241
BseBI	CCWGG	2 cut(s)	40, 77
BseDI	CCNNGG	3 cut(s)	75, 123, 147
BseGI	GGATG	1 cut(s)	5
BseLI	CCNNNNNNNGG	1 cut(s)	228
BseNI	ACTGG	1 cut(s)	241
BseRI	GAGGAG	1 cut(s)	25
BsgI	GTGCAG	1 cut(s)	200
Bsh1236I	CGCG	1 cut(s)	22
BshFI	GGCC	2 cut(s)	122, 233
BshTI	ACCGGT	1 cut(s)	105
BsiSI	CCGG	1 cut(s)	106
BslI	CCNNNNNNNGG	1 cut(s)	228
BsmI	GAATGC	1 cut(s)	76
BsnI	GGCC	2 cut(s)	122, 233
Bsp143I	GATC	1 cut(s)	184
BspACI	CCGC	1 cut(s)	22
BspANI	GGCC	2 cut(s)	122, 233
BspFNI	CGCG	1 cut(s)	22
BspPI	GGATC	1 cut(s)	192
BsrFI	RCCGGY	1 cut(s)	105
BsrI	ACTGG	1 cut(s)	241
BssAI	RCCGGY	1 cut(s)	105
BssECI	CCNNGG	3 cut(s)	75, 123, 147
BssMI	GATC	1 cut(s)	184
BssT1I	CCWWGG	1 cut(s)	123
Bst2UI	CCWGG	2 cut(s)	40, 77
BstF5I	GGATG	1 cut(s)	5
BstFNI	CGCG	1 cut(s)	22
BstKTI	GATC	1 cut(s)	187
BstMBI	GATC	1 cut(s)	184
BstMWI	GCNNNNNNNGC	1 cut(s)	58
BstNI	CCWGG	2 cut(s)	40, 77
BstSCI	CCNGG	2 cut(s)	38, 75
BstUI	CGCG	1 cut(s)	22
BstX2I	RGATCY	1 cut(s)	184
BstXI	CCANNNNNNTGG	1 cut(s)	130
BstYI	RGATCY	1 cut(s)	184
BsuRI	GGCC	2 cut(s)	122, 233
BtsCI	GGATG	1 cut(s)	5
BtsIMutI	CAGTG	1 cut(s)	234
Cfr10I	RCCGGY	1 cut(s)	105
Cfr13I	GGNCC	2 cut(s)	103, 231
CseI	GACGC	1 cut(s)	52
Csp6I	GTAC	1 cut(s)	85
CspAI	ACCGGT	1 cut(s)	105
CviAII	CATG	1 cut(s)	190
CviJI	RGCY	6 cut(s)	61, 80, 122, 128, 146, 233
CviKI_1	RGCY	6 cut(s)	61, 80, 122, 128, 146, 233
CviQI	GTAC	1 cut(s)	85
DpnI	GATC	1 cut(s)	186
DpnII	GATC	1 cut(s)	184
EaeI	YGGCCR	1 cut(s)	120
Eco130I	CCWWGG	1 cut(s)	123
Eco47I	GGWCC	1 cut(s)	103
Eco57I	CTGAAG	1 cut(s)	68
EcoRI	GAATTC	1 cut(s)	25
EcoRII	CCWGG	2 cut(s)	38, 75
EcoT14I	CCWWGG	1 cut(s)	123
EcoT22I	ATGCAT	1 cut(s)	195
ErhI	CCWWGG	1 cut(s)	123
FaeI	CATG	1 cut(s)	193
FaiI	YATR	4 cut(s)	168, 191, 195, 197
FatI	CATG	1 cut(s)	189
FspBI	CTAG	2 cut(s)	249, 256
HaeIII	GGCC	2 cut(s)	122, 233
HapII	CCGG	1 cut(s)	106
HgaI	GACGC	1 cut(s)	52
Hin1II	CATG	1 cut(s)	193
HinfI	GANTC	3 cut(s)	172, 200, 252
HpaII	CCGG	1 cut(s)	106
Hpy166II	GTNNAC	1 cut(s)	85
Hpy188III	TCNNGA	2 cut(s)	157, 249
Hpy8I	GTNNAC	1 cut(s)	85
Hpy99I	CGWCG	1 cut(s)	22
HpyCH4V	TGCA	2 cut(s)	181, 193
HpyF10VI	GCNNNNNNNGC	1 cut(s)	58
Hsp92II	CATG	1 cut(s)	193
Kzo9I	GATC	1 cut(s)	184
LweI	GCATC	1 cut(s)	14
MaeI	CTAG	2 cut(s)	249, 256
MalI	GATC	1 cut(s)	186
MboI	GATC	1 cut(s)	184
MflI	RGATCY	1 cut(s)	184
MlsI	TGGCCA	1 cut(s)	122
MluCI	AATT	3 cut(s)	25, 115, 223
MluNI	TGGCCA	1 cut(s)	122
MlyI	GAGTC	1 cut(s)	246
MmeI	TCCRAC	1 cut(s)	54
MnlI	CCTC	3 cut(s)	46, 142, 153
Mox20I	TGGCCA	1 cut(s)	122
Mph1103I	ATGCAT	1 cut(s)	195
MscI	TGGCCA	1 cut(s)	122
Msp20I	TGGCCA	1 cut(s)	122
MspI	CCGG	1 cut(s)	106
MspR9I	CCNGG	2 cut(s)	40, 77
Mva1269I	GAATGC	1 cut(s)	76
MvaI	CCWGG	2 cut(s)	40, 77
MvnI	CGCG	1 cut(s)	22
MwoI	GCNNNNNNNGC	1 cut(s)	58
NdeII	GATC	1 cut(s)	184
NlaIII	CATG	1 cut(s)	193
NmeAIII	GCCGAG	1 cut(s)	172
NsiI	ATGCAT	1 cut(s)	195
PctI	GAATGC	1 cut(s)	76
PfeI	GAWTC	2 cut(s)	172, 200
PflFI	GACNNNGTC	1 cut(s)	16
PfoI	TCCNGGA	1 cut(s)	38
PinAI	ACCGGT	1 cut(s)	105
PleI	GAGTC	1 cut(s)	246
PpsI	GAGTC	1 cut(s)	246
Psp6I	CCWGG	2 cut(s)	38, 75
PspGI	CCWGG	2 cut(s)	38, 75
PspPI	GGNCC	2 cut(s)	103, 231
PsuI	RGATCY	1 cut(s)	184
PsyI	GACNNNGTC	1 cut(s)	16
RsaI	GTAC	1 cut(s)	86
RsaNI	GTAC	1 cut(s)	85
Sau3AI	GATC	1 cut(s)	184
Sau96I	GGNCC	2 cut(s)	103, 231
SchI	GAGTC	1 cut(s)	246
ScrFI	CCNGG	2 cut(s)	40, 77
SetI	ASST	1 cut(s)	63
SfaNI	GCATC	1 cut(s)	14
SinI	GGWCC	1 cut(s)	103
Sse9I	AATT	3 cut(s)	25, 115, 223
SsiI	CCGC	1 cut(s)	22
SspMI	CTAG	2 cut(s)	249, 256
StyD4I	CCNGG	2 cut(s)	38, 75
StyI	CCWWGG	1 cut(s)	123
TasI	AATT	3 cut(s)	25, 115, 223
TfiI	GAWTC	2 cut(s)	172, 200
TscAI	CASTG	1 cut(s)	241
TspRI	CASTG	1 cut(s)	241
Tth111I	GACNNNGTC	1 cut(s)	16
VpaK11BI	GGWCC	1 cut(s)	103
XapI	RAATTY	1 cut(s)	25
XbaI	TCTAGA	1 cut(s)	248
XspI	CTAG	2 cut(s)	249, 256
Zsp2I	ATGCAT	1 cut(s)	195

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.