Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000175

Orthogroup ID

OG0002291

Physical Location & Seq

Genomic Coordinates Reverse (-)

208176 .. 215227

Gene Structure 7052 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_175G00432000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 291 bp

ATGGATAGAGTACATCATGTTCTCTCAAAAAAACATGACTCAAACAGCTGCTGGACACCAAAGCAGAACAAGTTATTTGAGAGGGCTCTGGCCCTATACGACAAGGATACCCCGGAACGGTGGCAAAATGTGGCCAAGGCTGTTGGCGGGAATAAAACAGCAGAGGAAGTGAAGAGACACTATGATATCCTACTTGAGGATCTCCGGCAAATTGAGTCCGGCCAGGTTCCTGTTCCCAACTACAAGTCCCTTGTAACCACCACTACAAATGTTGATGAGGAAGAAAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

96

Amino Acids

11.15

Weight (kDa)

6.41

Isoelectric Point (pI)

67.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	17 - 61	3.7e-07	Myb-like DNA-binding domain
Myb_DNA-binding_2	PF23082	18 - 62	1.2e-08	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002291)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19510 AT1G75250 AT1G75250
fragaria_vesca	FvH4_2g08980 FvH4_2g39660
malus_domestica	MD08G1030400.v1.1 MD10G1074400.v1.1 MD15G1025600.v1.1
prunus_persica	Prupe.1G378000_v2.0.a1 Prupe.8G095800_v2.0.a1
pyrus_communis	pycom10g05830 pycom15g02200
rosa_chinensis	RchiOBHm_Chr3g0458061 RchiOBHm_Chr6g0264661 RchiOBHm_Chr6g0301221
rosa_laevigata	RLG00000014237 RLG00000025176
rosa_multiflora	Rmu_co8206514.1_g000001 Rmu_co8336827.1_g000001 Rmu_sc0000384.1_g000016 Rmu_sc0000546.1_g000016 Rmu_sc0002592.1_g000001
rosa_roxburghii	Rroxscaffold_171G00441330 Rroxscaffold_175G00432000 Rroxscaffold_6G00421310 Rroxscaffold_7G00203220
rosa_rugosa	Rorug03G0024600 Rorug06G0015100 Rorug06G0302500
rosa_samantha	Rh3AG085300 Rh3BG088000 Rh3CG088600 Rh3DG088900 Rh6AG134100 Rh6AG415800 Rh6BG131600 Rh6CG130300 Rh6CG430300 Rh6DG117300
rosa_wichuraiana	Rw0G012440 Rw6G011610 Rw6G036010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	147
AclWI	GGATC	1 cut(s)	207
AcoI	YGGCCR	2 cut(s)	132, 220
AfaI	GTAC	1 cut(s)	12
AfiI	CCNNNNNNNGG	2 cut(s)	117, 196
AjnI	CCWGG	1 cut(s)	222
AluBI	AGCT	1 cut(s)	48
AluI	AGCT	1 cut(s)	48
Alw26I	GTCTC	1 cut(s)	169
AlwI	GGATC	1 cut(s)	207
AlwNI	CAGNNNCTG	1 cut(s)	51
AoxI	GGCC	3 cut(s)	90, 132, 220
ApeKI	GCWGC	1 cut(s)	48
AspS9I	GGNCC	1 cut(s)	91
AsuC2I	CCSGG	1 cut(s)	113
BalI	TGGCCA	1 cut(s)	134
BanII	GRGCYC	1 cut(s)	88
BbvI	GCAGC	1 cut(s)	35
BciT130I	CCWGG	1 cut(s)	224
BciVI	GTATCC	1 cut(s)	100
BcnI	CCSGG	1 cut(s)	113
BcoDI	GTCTC	1 cut(s)	169
BfuI	GTATCC	1 cut(s)	100
BisI	GCNGC	1 cut(s)	49
BlsI	GCNGC	1 cut(s)	50
Bme1390I	CCNGG	2 cut(s)	113, 224
BmgT120I	GGNCC	1 cut(s)	91
BmiI	GGNNCC	1 cut(s)	228
BmrFI	CCNGG	2 cut(s)	113, 224
BpuEI	CTTGAG	1 cut(s)	215
BpuMI	CCSGG	1 cut(s)	113
BsaJI	CCNNGG	2 cut(s)	111, 135
Bsc4I	CCNNNNNNNGG	2 cut(s)	117, 196
BseBI	CCWGG	1 cut(s)	224
BseDI	CCNNGG	2 cut(s)	111, 135
BseLI	CCNNNNNNNGG	2 cut(s)	117, 196
BseXI	GCAGC	1 cut(s)	35
BshFI	GGCC	3 cut(s)	92, 134, 222
BsiSI	CCGG	3 cut(s)	113, 205, 219
BslFI	GGGAC	1 cut(s)	232
BslI	CCNNNNNNNGG	2 cut(s)	117, 196
BsmAI	GTCTC	1 cut(s)	169
BsmFI	GGGAC	1 cut(s)	232
BsnI	GGCC	3 cut(s)	92, 134, 222
Bsp1286I	GDGCHC	1 cut(s)	88
Bsp143I	GATC	1 cut(s)	199
BspACI	CCGC	1 cut(s)	147
BspANI	GGCC	3 cut(s)	92, 134, 222
BspLI	GGNNCC	1 cut(s)	228
BspPI	GGATC	1 cut(s)	207
BssECI	CCNNGG	2 cut(s)	111, 135
BssMI	GATC	1 cut(s)	199
BssT1I	CCWWGG	1 cut(s)	135
Bst2UI	CCWGG	1 cut(s)	224
Bst4CI	ACNGT	1 cut(s)	120
Bst6I	CTCTTC	1 cut(s)	167
BstENI	CCTNNNNNAGG	1 cut(s)	194
BstKTI	GATC	1 cut(s)	202
BstMAI	GTCTC	1 cut(s)	169
BstMBI	GATC	1 cut(s)	199
BstNI	CCWGG	1 cut(s)	224
BstSCI	CCNGG	2 cut(s)	111, 222
BstV1I	GCAGC	1 cut(s)	35
BstX2I	RGATCY	1 cut(s)	199
BstYI	RGATCY	1 cut(s)	199
BsuI	GTATCC	1 cut(s)	100
BsuRI	GGCC	3 cut(s)	92, 134, 222
CaiI	CAGNNNCTG	1 cut(s)	51
Cfr13I	GGNCC	1 cut(s)	91
Csp6I	GTAC	1 cut(s)	11
CviAII	CATG	2 cut(s)	17, 35
CviJI	RGCY	6 cut(s)	48, 86, 92, 134, 140, 222
CviKI_1	RGCY	6 cut(s)	48, 86, 92, 134, 140, 222
CviQI	GTAC	1 cut(s)	11
DpnI	GATC	1 cut(s)	201
DpnII	GATC	1 cut(s)	199
EaeI	YGGCCR	2 cut(s)	132, 220
Eam1104I	CTCTTC	1 cut(s)	167
EarI	CTCTTC	1 cut(s)	167
Eco130I	CCWWGG	1 cut(s)	135
Eco24I	GRGCYC	1 cut(s)	88
Eco32I	GATATC	1 cut(s)	187
EcoNI	CCTNNNNNAGG	1 cut(s)	194
EcoRII	CCWGG	1 cut(s)	222
EcoRV	GATATC	1 cut(s)	187
EcoT14I	CCWWGG	1 cut(s)	135
EcoT38I	GRGCYC	1 cut(s)	88
ErhI	CCWWGG	1 cut(s)	135
FaeI	CATG	2 cut(s)	20, 38
FaiI	YATR	4 cut(s)	18, 36, 97, 183
FaqI	GGGAC	1 cut(s)	232
FatI	CATG	2 cut(s)	16, 34
FauI	CCCGC	1 cut(s)	140
Fnu4HI	GCNGC	1 cut(s)	49
FriOI	GRGCYC	1 cut(s)	88
Fsp4HI	GCNGC	1 cut(s)	49
GluI	GCNGC	1 cut(s)	49
HaeIII	GGCC	3 cut(s)	92, 134, 222
HapII	CCGG	3 cut(s)	113, 205, 219
Hin1II	CATG	2 cut(s)	20, 38
HinfI	GANTC	2 cut(s)	38, 215
HpaII	CCGG	3 cut(s)	113, 205, 219
HpyCH4III	ACNGT	1 cut(s)	120
Hsp92II	CATG	2 cut(s)	20, 38
Kzo9I	GATC	1 cut(s)	199
LpnPI	CCDG	8 cut(s)	37, 74, 126, 209, 218, 232, 236, 243
Lsp1109I	GCAGC	1 cut(s)	35
MaeIII	GTNAC	1 cut(s)	253
MalI	GATC	1 cut(s)	201
MboI	GATC	1 cut(s)	199
MboII	GAAGA	1 cut(s)	184
MflI	RGATCY	1 cut(s)	199
MhlI	GDGCHC	1 cut(s)	88
MlsI	TGGCCA	1 cut(s)	134
MluCI	AATT	1 cut(s)	210
MluNI	TGGCCA	1 cut(s)	134
MlyI	GAGTC	2 cut(s)	32, 224
MnlI	CCTC	4 cut(s)	75, 157, 190, 271
Mox20I	TGGCCA	1 cut(s)	134
MscI	TGGCCA	1 cut(s)	134
Msp20I	TGGCCA	1 cut(s)	134
MspA1I	CMGCKG	1 cut(s)	48
MspI	CCGG	3 cut(s)	113, 205, 219
MspR9I	CCNGG	2 cut(s)	113, 224
MvaI	CCWGG	1 cut(s)	224
NciI	CCSGG	1 cut(s)	113
NdeII	GATC	1 cut(s)	199
NlaIII	CATG	2 cut(s)	20, 38
NlaIV	GGNNCC	1 cut(s)	228
PkrI	GCNGC	1 cut(s)	50
PleI	GAGTC	2 cut(s)	32, 223
PpsI	GAGTC	2 cut(s)	32, 223
Psp6I	CCWGG	1 cut(s)	222
PspGI	CCWGG	1 cut(s)	222
PspN4I	GGNNCC	1 cut(s)	228
PspPI	GGNCC	1 cut(s)	91
PsrI	GAACNNNNNNTAC	1 cut(s)	35
PstNI	CAGNNNCTG	1 cut(s)	51
PsuI	RGATCY	1 cut(s)	199
PvuII	CAGCTG	1 cut(s)	48
RsaI	GTAC	1 cut(s)	12
RsaNI	GTAC	1 cut(s)	11
SatI	GCNGC	1 cut(s)	49
Sau3AI	GATC	1 cut(s)	199
Sau96I	GGNCC	1 cut(s)	91
SchI	GAGTC	2 cut(s)	32, 224
ScrFI	CCNGG	2 cut(s)	113, 224
SduI	GDGCHC	1 cut(s)	88
SetI	ASST	3 cut(s)	50, 228, 290
SmlI	CTYRAG	1 cut(s)	194
SmoI	CTYRAG	1 cut(s)	194
Sse9I	AATT	1 cut(s)	210
SsiI	CCGC	1 cut(s)	147
StyD4I	CCNGG	2 cut(s)	111, 222
StyI	CCWWGG	1 cut(s)	135
TaaI	ACNGT	1 cut(s)	120
TasI	AATT	1 cut(s)	210
TatI	WGTACW	1 cut(s)	10
TseI	GCWGC	1 cut(s)	48
XagI	CCTNNNNNAGG	1 cut(s)	194

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.