Rorug06G0015100
MYB Family

RADIALIS-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0002291
Physical Location & Seq
Forward (+)
1951887 .. 1954018
2132 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0015100.1

Sequence Viewer

Length: 774 bp
ATGGGGAGATCTCCTTGCTGTGAAAAGGCTCACACGAACAAAGGAGCTTGGACCAAAGAAGAAGATGATCGCCTCATTGCTTATATTCGAGCTCACGGCGAAGGCTGCTGGCGCTCTCTGCCTAAAGCAGCCGGCCTTCTTCGCTGCGGCAAGAGCTGTAGGCTGCGGTGGATCAACTACCTCAGACCGGACCTCAAGCGCGGAAATTTCACTGAAGAAGAAGATGAGCTCATCATCAAGCTCCATAGCCTCCTCGGGAACAAATGGTCTTTGATTGCTGGGAGACTACCGGGAAGAACAGACAATGAGATAAAGAACTACTGGAATACCCATATAAGAAGGAAGCTTTTGACAAGAGGTATTGACCCTGCAACTCACAGACCACTCAATGAAACACCTCAGGACTCTGCCACAACCACCACTATCTCTTTTGCTGCTTCTTCTGCTATTAAAGAAGAAGATCAGAAAATCAGCACCAGTATTGGGATTGTGGGCAGCAAAGACTCAAAAAACCCAGTTCAAGAGAAGTGTCCAGATTTGAATCTCGAGCTTAGAATTAGTCCTCCTAGCCAGGCCAAACCAGCTGAGTCTTTGAAGAGTGGGGGAAGAGGTGTCTGCTTTTCTTGCAGTTTGGGGTTAAAGGACTCAAAGAGTTGCAGTAGCTGTGGGATTGATAATATTGGTGCCACAAGTGCCGGCACTAGTAATATTGCTTATGATTTCTTGGGATTGAAAAATGGGGTGTTGGATTACAGAAGCTTGGAGATGAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

257

Amino Acids

28.29

Weight (kDa)

9.06

Isoelectric Point (pI)

50.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 14 - 61 6.6e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 17 - 76 1.5e-12 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 67 - 111 2.2e-19 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 70 - 116 7.4e-10 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 683
AccII CGCG 1 cut(s) 201
AciI CCGC 3 cut(s) 147, 166, 201
AclWI GGATC 1 cut(s) 179
AcsI RAATTY 1 cut(s) 205
AcuI CTGAAG 1 cut(s) 234
AfiI CCNNNNNNNGG 2 cut(s) 187, 483
AgsI TTSAA 4 cut(s) 521, 541, 595, 733
AhlI ACTAGT 1 cut(s) 701
AjnI CCWGG 1 cut(s) 570
Alw21I GWGCWC 2 cut(s) 94, 231
Alw26I GTCTC 1 cut(s) 277
AlwI GGATC 1 cut(s) 179
AlwNI CAGNNNCTG 1 cut(s) 663
Ama87I CYCGRG 2 cut(s) 254, 545
AoxI GGCC 2 cut(s) 133, 573
ApeKI GCWGC 6 cut(s) 105, 128, 144, 163, 434, 495
ApoI RAATTY 1 cut(s) 205
AspLEI GCGC 2 cut(s) 114, 201
AspS9I GGNCC 2 cut(s) 51, 190
AsuC2I CCSGG 1 cut(s) 291
AvaI CYCGRG 2 cut(s) 254, 545
AvaII GGWCC 2 cut(s) 51, 190
AxyI CCTNAGG 1 cut(s) 399
BanI GGYRCC 1 cut(s) 683
BanII GRGCYC 2 cut(s) 94, 231
Bbv12I GWGCWC 2 cut(s) 94, 231
BbvI GCAGC 6 cut(s) 92, 131, 140, 150, 421, 507
BceAI ACGGC 1 cut(s) 112
BciT130I CCWGG 1 cut(s) 572
BcnI CCSGG 1 cut(s) 291
BcoDI GTCTC 1 cut(s) 277
BcuI ACTAGT 1 cut(s) 701
BfaI CTAG 2 cut(s) 567, 702
BfmI CTRYAG 1 cut(s) 157
BfoI RGCGCY 1 cut(s) 115
BglII AGATCT 1 cut(s) 8
BisI GCNGC 7 cut(s) 106, 129, 145, 148, 164, 435, 496
BlsI GCNGC 7 cut(s) 107, 130, 146, 149, 165, 436, 497
Bme1390I CCNGG 2 cut(s) 291, 572
Bme18I GGWCC 2 cut(s) 51, 190
BmeT110I CYCGRG 2 cut(s) 254, 545
BmgT120I GGNCC 2 cut(s) 51, 190
BmiI GGNNCC 1 cut(s) 685
BmrFI CCNGG 2 cut(s) 291, 572
BmrI ACTGGG 1 cut(s) 509
BmuI ACTGGG 1 cut(s) 509
BpuEI CTTGAG 1 cut(s) 179
BpuMI CCSGG 1 cut(s) 291
BsaBI GATNNNNATC 1 cut(s) 540
BsaJI CCNNGG 1 cut(s) 253
BsaWI WCCGGW 1 cut(s) 187
Bsc4I CCNNNNNNNGG 2 cut(s) 187, 483
Bse118I RCCGGY 2 cut(s) 131, 695
Bse1I ACTGG 3 cut(s) 326, 477, 515
Bse21I CCTNAGG 1 cut(s) 399
Bse3DI GCAATG 1 cut(s) 75
Bse8I GATNNNNATC 1 cut(s) 540
BseBI CCWGG 1 cut(s) 572
BseDI CCNNGG 1 cut(s) 253
BseJI GATNNNNATC 1 cut(s) 540
BseLI CCNNNNNNNGG 2 cut(s) 187, 483
BseMI GCAATG 1 cut(s) 75
BseMII CTCAG 3 cut(s) 196, 413, 576
BseNI ACTGG 3 cut(s) 326, 477, 515
BseRI GAGGAG 1 cut(s) 242
BseXI GCAGC 6 cut(s) 92, 131, 140, 150, 421, 507
BseYI CCCAGC 1 cut(s) 278
Bsh1236I CGCG 1 cut(s) 201
BshFI GGCC 2 cut(s) 135, 575
BshNI GGYRCC 1 cut(s) 683
BsiHKAI GWGCWC 2 cut(s) 94, 231
BsiHKCI CYCGRG 2 cut(s) 254, 545
BsiSI CCGG 4 cut(s) 132, 188, 290, 696
BslI CCNNNNNNNGG 2 cut(s) 187, 483
BsmAI GTCTC 1 cut(s) 277
BsnI GGCC 2 cut(s) 135, 575
BsoBI CYCGRG 2 cut(s) 254, 545
Bsp1286I GDGCHC 2 cut(s) 94, 231
Bsp143I GATC 4 cut(s) 8, 67, 171, 460
BspACI CCGC 3 cut(s) 147, 166, 201
BspANI GGCC 2 cut(s) 135, 575
BspCNI CTCAG 3 cut(s) 195, 412, 577
BspFNI CGCG 1 cut(s) 201
BspLI GGNNCC 1 cut(s) 685
BspPI GGATC 1 cut(s) 179
BspT107I GGYRCC 1 cut(s) 683
BsrDI GCAATG 1 cut(s) 75
BsrFI RCCGGY 2 cut(s) 131, 695
BsrI ACTGG 3 cut(s) 326, 477, 515
BssAI RCCGGY 2 cut(s) 131, 695
BssECI CCNNGG 1 cut(s) 253
BssMI GATC 4 cut(s) 8, 67, 171, 460
Bst2UI CCWGG 1 cut(s) 572
Bst6I CTCTTC 2 cut(s) 590, 601
BstC8I GCNNGC 3 cut(s) 110, 133, 697
BstDEI CTNAG 4 cut(s) 182, 399, 551, 585
BstFNI CGCG 1 cut(s) 201
BstH2I RGCGCY 1 cut(s) 115
BstHHI GCGC 2 cut(s) 114, 201
BstKTI GATC 4 cut(s) 11, 70, 174, 463
BstMAI GTCTC 1 cut(s) 277
BstMBI GATC 4 cut(s) 8, 67, 171, 460
BstMWI GCNNNNNNNGC 9 cut(s) 105, 111, 118, 141, 153, 443, 581, 624, 692
BstNI CCWGG 1 cut(s) 572
BstSCI CCNGG 2 cut(s) 289, 570
BstSFI CTRYAG 1 cut(s) 157
BstUI CGCG 1 cut(s) 201
BstV1I GCAGC 6 cut(s) 92, 131, 140, 150, 421, 507
BstX2I RGATCY 1 cut(s) 8
BstYI RGATCY 1 cut(s) 8
Bsu36I CCTNAGG 1 cut(s) 399
BsuRI GGCC 2 cut(s) 135, 575
BtsIMutI CAGTG 1 cut(s) 210
Cac8I GCNNGC 3 cut(s) 110, 133, 697
CaiI CAGNNNCTG 1 cut(s) 663
CfoI GCGC 2 cut(s) 114, 201
Cfr10I RCCGGY 2 cut(s) 131, 695
Cfr13I GGNCC 2 cut(s) 51, 190
DdeI CTNAG 4 cut(s) 182, 399, 551, 585
DpnI GATC 4 cut(s) 10, 69, 173, 462
DpnII GATC 4 cut(s) 8, 67, 171, 460
Eam1104I CTCTTC 2 cut(s) 590, 601
EarI CTCTTC 2 cut(s) 590, 601
Ecl136II GAGCTC 2 cut(s) 92, 229
Eco24I GRGCYC 2 cut(s) 94, 231
Eco47I GGWCC 2 cut(s) 51, 190
Eco53kI GAGCTC 2 cut(s) 92, 229
Eco57I CTGAAG 1 cut(s) 234
Eco81I CCTNAGG 1 cut(s) 399
Eco88I CYCGRG 2 cut(s) 254, 545
EcoICRI GAGCTC 2 cut(s) 92, 229
EcoRII CCWGG 1 cut(s) 570
EcoT38I GRGCYC 2 cut(s) 94, 231
FaiI YATR 5 cut(s) 84, 246, 333, 335, 717
Fnu4HI GCNGC 7 cut(s) 106, 129, 145, 148, 164, 435, 496
FriOI GRGCYC 2 cut(s) 94, 231
Fsp4HI GCNGC 7 cut(s) 106, 129, 145, 148, 164, 435, 496
FspBI CTAG 2 cut(s) 567, 702
GlaI GCGC 2 cut(s) 113, 200
GluI GCNGC 7 cut(s) 106, 129, 145, 148, 164, 435, 496
GsaI CCCAGC 1 cut(s) 282
HaeII RGCGCY 1 cut(s) 115
HaeIII GGCC 2 cut(s) 135, 575
HapII CCGG 4 cut(s) 132, 188, 290, 696
HhaI GCGC 2 cut(s) 114, 201
Hin6I GCGC 2 cut(s) 112, 199
HinP1I GCGC 2 cut(s) 112, 199
HindIII AAGCTT 2 cut(s) 344, 757
HinfI GANTC 5 cut(s) 404, 503, 541, 587, 644
HpaII CCGG 4 cut(s) 132, 188, 290, 696
Hpy188I TCNGA 2 cut(s) 185, 465
Hpy188III TCNNGA 5 cut(s) 256, 401, 521, 533, 545
HpyAV CCTTC 3 cut(s) 95, 146, 333
HpyCH4V TGCA 3 cut(s) 371, 627, 657
HpyF10VI GCNNNNNNNGC 9 cut(s) 105, 111, 118, 141, 153, 443, 581, 624, 692
HpyF3I CTNAG 4 cut(s) 182, 399, 551, 585
HspAI GCGC 2 cut(s) 112, 199
KroI GCCGGC 2 cut(s) 131, 695
KroNI GCCGGC 2 cut(s) 133, 697
Kzo9I GATC 4 cut(s) 8, 67, 171, 460
LmnI GCTCC 2 cut(s) 44, 246
Lsp1109I GCAGC 6 cut(s) 92, 131, 140, 150, 421, 507
MaeI CTAG 2 cut(s) 567, 702
MalI GATC 4 cut(s) 10, 69, 173, 462
MboI GATC 4 cut(s) 8, 67, 171, 460
MflI RGATCY 1 cut(s) 8
MhlI GDGCHC 2 cut(s) 94, 231
MluCI AATT 2 cut(s) 205, 555
MlyI GAGTC 4 cut(s) 398, 497, 596, 638
MmeI TCCRAC 1 cut(s) 726
MnlI CCTC 9 cut(s) 83, 191, 203, 260, 263, 350, 408, 573, 602
MroNI GCCGGC 2 cut(s) 131, 695
MseI TTAA 2 cut(s) 450, 638
MspA1I CMGCKG 1 cut(s) 584
MspI CCGG 4 cut(s) 132, 188, 290, 696
MspR9I CCNGG 2 cut(s) 291, 572
MvaI CCWGG 1 cut(s) 572
MvnI CGCG 1 cut(s) 201
MwoI GCNNNNNNNGC 9 cut(s) 105, 111, 118, 141, 153, 443, 581, 624, 692
NaeI GCCGGC 2 cut(s) 133, 697
NciI CCSGG 1 cut(s) 291
NdeII GATC 4 cut(s) 8, 67, 171, 460
NgoMIV GCCGGC 2 cut(s) 131, 695
NlaIV GGNNCC 1 cut(s) 685
PaeR7I CTCGAG 1 cut(s) 545
PdiI GCCGGC 2 cut(s) 133, 697
PfeI GAWTC 1 cut(s) 541
PkrI GCNGC 7 cut(s) 107, 130, 146, 149, 165, 436, 497
PleI GAGTC 4 cut(s) 398, 497, 595, 638
PpsI GAGTC 4 cut(s) 398, 497, 595, 638
Psp124BI GAGCTC 2 cut(s) 94, 231
Psp6I CCWGG 1 cut(s) 570
PspFI CCCAGC 1 cut(s) 278
PspGI CCWGG 1 cut(s) 570
PspN4I GGNNCC 1 cut(s) 685
PspPI GGNCC 2 cut(s) 51, 190
PstNI CAGNNNCTG 1 cut(s) 663
PsuI RGATCY 1 cut(s) 8
PvuII CAGCTG 1 cut(s) 584
SacI GAGCTC 2 cut(s) 94, 231
SaqAI TTAA 2 cut(s) 450, 638
SatI GCNGC 7 cut(s) 106, 129, 145, 148, 164, 435, 496
Sau3AI GATC 4 cut(s) 8, 67, 171, 460
Sau96I GGNCC 2 cut(s) 51, 190
SchI GAGTC 4 cut(s) 398, 497, 596, 638
ScrFI CCNGG 2 cut(s) 291, 572
SduI GDGCHC 2 cut(s) 94, 231
SfcI CTRYAG 1 cut(s) 157
Sfr274I CTCGAG 1 cut(s) 545
SinI GGWCC 2 cut(s) 51, 190
SlaI CTCGAG 1 cut(s) 545
SmlI CTYRAG 2 cut(s) 194, 545
SmoI CTYRAG 2 cut(s) 194, 545
SpeI ACTAGT 1 cut(s) 701
Sse9I AATT 2 cut(s) 205, 555
SsiI CCGC 3 cut(s) 147, 166, 201
SspI AATATT 2 cut(s) 679, 709
SspMI CTAG 2 cut(s) 567, 702
SstI GAGCTC 2 cut(s) 94, 231
StyD4I CCNGG 2 cut(s) 289, 570
TaqI TCGA 2 cut(s) 88, 546
TasI AATT 2 cut(s) 205, 555
TauI GCSGC 1 cut(s) 150
TfiI GAWTC 1 cut(s) 541
Tru1I TTAA 2 cut(s) 450, 638
Tru9I TTAA 2 cut(s) 450, 638
TscAI CASTG 1 cut(s) 217
TseI GCWGC 6 cut(s) 105, 128, 144, 163, 434, 495
TspDTI ATGAA 1 cut(s) 405
TspRI CASTG 1 cut(s) 217
VpaK11BI GGWCC 2 cut(s) 51, 190
XapI RAATTY 1 cut(s) 205
XhoI CTCGAG 1 cut(s) 545
XspI CTAG 2 cut(s) 567, 702
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.