Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0002291

Physical Location & Seq

Genomic Coordinates Forward (+)

1497521 .. 1499624

Gene Structure 2104 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1025600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

ATGGCATCGGTTTCTTCCTCGAGGAATCACAGCTCCTCGTGGACGCCGAAGCAGAACAAGTTGTTCGAGAAGGCGCTGGCCGTGTACGACAAGGACACGCAGGACCGCTGGCACAATGTGGCCAAGGCCGTGGACGGAAAAACTGTGGAGGAAGTGAAGAGGCACTATGAGATTCTGGTGCATGATCTCATGCACATAGAATCCGGCCAAGTCCCTATACCGAATTATAAGGCCACCGGAAGCAGCAGCAGCAGCAACGGCAGCAACAGAGGATTGGGTGATGAGCAGAGGCTAATGAAAAATCTGAAGATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002791 GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0005783 GO:0005788 GO:0005789 GO:0005886 GO:0006355 GO:0006417 GO:0006457 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0010608 GO:0012505 GO:0016020 GO:0016021 GO:0019219 GO:0019222 GO:0031090 GO:0031224 GO:0031323 GO:0031326 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031984 GO:0032268 GO:0032879 GO:0032880 GO:0034248 GO:0042175 GO:0043021 GO:0043022 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0050708 GO:0050789 GO:0050794 GO:0051046 GO:0051049 GO:0051087 GO:0051171 GO:0051223 GO:0051246 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0070201 GO:0071944 GO:0080090 GO:0090087 GO:0098827 GO:0140110 GO:1903506 GO:1903530 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

105

Amino Acids

11.67

Weight (kDa)

9.26

Isoelectric Point (pI)

67.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding_2	PF23082	13 - 56	4.2e-06	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	13 - 56	4.5e-06	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002291)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19510 AT1G75250 AT1G75250
fragaria_vesca	FvH4_2g08980 FvH4_2g39660
malus_domestica	MD08G1030400.v1.1 MD10G1074400.v1.1 MD15G1025600.v1.1
prunus_persica	Prupe.1G378000_v2.0.a1 Prupe.8G095800_v2.0.a1
pyrus_communis	pycom10g05830 pycom15g02200
rosa_chinensis	RchiOBHm_Chr3g0458061 RchiOBHm_Chr6g0264661 RchiOBHm_Chr6g0301221
rosa_laevigata	RLG00000014237 RLG00000025176
rosa_multiflora	Rmu_co8206514.1_g000001 Rmu_co8336827.1_g000001 Rmu_sc0000384.1_g000016 Rmu_sc0000546.1_g000016 Rmu_sc0002592.1_g000001
rosa_roxburghii	Rroxscaffold_171G00441330 Rroxscaffold_175G00432000 Rroxscaffold_6G00421310 Rroxscaffold_7G00203220
rosa_rugosa	Rorug03G0024600 Rorug06G0015100 Rorug06G0302500
rosa_samantha	Rh3AG085300 Rh3BG088000 Rh3CG088600 Rh3DG088900 Rh6AG134100 Rh6AG415800 Rh6BG131600 Rh6CG130300 Rh6CG430300 Rh6DG117300
rosa_wichuraiana	Rw0G012440 Rw6G011610 Rw6G036010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	228
AbsI	CCTCGAGG	1 cut(s)	19
AciI	CCGC	1 cut(s)	106
AcoI	YGGCCR	3 cut(s)	78, 120, 205
AcyI	GRCGYC	1 cut(s)	44
AdeI	CACNNNGTG	1 cut(s)	118
AfaI	GTAC	1 cut(s)	86
AluBI	AGCT	1 cut(s)	33
AluI	AGCT	1 cut(s)	33
Ama87I	CYCGRG	1 cut(s)	19
AoxI	GGCC	5 cut(s)	78, 120, 126, 205, 231
ApeKI	GCWGC	5 cut(s)	243, 246, 249, 252, 261
AspLEI	GCGC	1 cut(s)	76
AspS9I	GGNCC	1 cut(s)	103
AsuHPI	GGTGA	1 cut(s)	290
AvaI	CYCGRG	1 cut(s)	19
AvaII	GGWCC	1 cut(s)	103
BalI	TGGCCA	1 cut(s)	122
BauI	CACGAG	1 cut(s)	37
BbvI	GCAGC	5 cut(s)	255, 258, 261, 264, 273
BceAI	ACGGC	3 cut(s)	65, 113, 274
BfoI	RGCGCY	1 cut(s)	77
BglII	AGATCT	1 cut(s)	309
BisI	GCNGC	5 cut(s)	244, 247, 250, 253, 262
BlsI	GCNGC	5 cut(s)	245, 248, 251, 254, 263
Bme18I	GGWCC	1 cut(s)	103
BmeT110I	CYCGRG	1 cut(s)	19
BmgT120I	GGNCC	1 cut(s)	103
BmsI	GCATC	1 cut(s)	14
BsaHI	GRCGYC	1 cut(s)	44
BsaJI	CCNNGG	2 cut(s)	123, 129
BsaWI	WCCGGW	1 cut(s)	236
BseDI	CCNNGG	2 cut(s)	123, 129
BseRI	GAGGAG	1 cut(s)	25
BseXI	GCAGC	5 cut(s)	255, 258, 261, 264, 273
BshFI	GGCC	5 cut(s)	80, 122, 128, 207, 233
BsiHKCI	CYCGRG	1 cut(s)	19
BsiSI	CCGG	2 cut(s)	204, 237
BslFI	GGGAC	1 cut(s)	197
BsmFI	GGGAC	1 cut(s)	197
BsnI	GGCC	5 cut(s)	80, 122, 128, 207, 233
BsoBI	CYCGRG	1 cut(s)	19
Bsp143I	GATC	2 cut(s)	184, 309
BspACI	CCGC	1 cut(s)	106
BspANI	GGCC	5 cut(s)	80, 122, 128, 207, 233
BssECI	CCNNGG	2 cut(s)	123, 129
BssMI	GATC	2 cut(s)	184, 309
BssNI	GRCGYC	1 cut(s)	44
BssSI	CACGAG	1 cut(s)	37
BssT1I	CCWWGG	1 cut(s)	123
Bst2BI	CACGAG	1 cut(s)	37
Bst4CI	ACNGT	1 cut(s)	145
Bst6I	CTCTTC	1 cut(s)	152
BstACI	GRCGYC	1 cut(s)	44
BstC8I	GCNNGC	2 cut(s)	78, 110
BstDSI	CCRYGG	1 cut(s)	129
BstH2I	RGCGCY	1 cut(s)	77
BstHHI	GCGC	1 cut(s)	76
BstKTI	GATC	2 cut(s)	187, 312
BstMBI	GATC	2 cut(s)	184, 309
BstMWI	GCNNNNNNNGC	4 cut(s)	249, 252, 258, 261
BstV1I	GCAGC	5 cut(s)	255, 258, 261, 264, 273
BstX2I	RGATCY	1 cut(s)	309
BstXI	CCANNNNNNTGG	1 cut(s)	130
BstYI	RGATCY	1 cut(s)	309
BsuRI	GGCC	5 cut(s)	80, 122, 128, 207, 233
BtgI	CCRYGG	1 cut(s)	129
Cac8I	GCNNGC	2 cut(s)	78, 110
CfoI	GCGC	1 cut(s)	76
Cfr13I	GGNCC	1 cut(s)	103
CseI	GACGC	1 cut(s)	52
Csp6I	GTAC	1 cut(s)	85
CviAII	CATG	2 cut(s)	182, 190
CviJI	RGCY	7 cut(s)	33, 80, 122, 128, 207, 233, 292
CviKI_1	RGCY	7 cut(s)	33, 80, 122, 128, 207, 233, 292
CviQI	GTAC	1 cut(s)	85
DpnI	GATC	2 cut(s)	186, 311
DpnII	GATC	2 cut(s)	184, 309
DraIII	CACNNNGTG	1 cut(s)	118
EaeI	YGGCCR	3 cut(s)	78, 120, 205
Eam1104I	CTCTTC	1 cut(s)	152
EarI	CTCTTC	1 cut(s)	152
Eco130I	CCWWGG	1 cut(s)	123
Eco47I	GGWCC	1 cut(s)	103
Eco88I	CYCGRG	1 cut(s)	19
EcoT14I	CCWWGG	1 cut(s)	123
ErhI	CCWWGG	1 cut(s)	123
FaeI	CATG	2 cut(s)	185, 193
FaiI	YATR	6 cut(s)	168, 183, 191, 197, 218, 228
FaqI	GGGAC	1 cut(s)	197
FatI	CATG	2 cut(s)	181, 189
Fnu4HI	GCNGC	5 cut(s)	244, 247, 250, 253, 262
Fsp4HI	GCNGC	5 cut(s)	244, 247, 250, 253, 262
GlaI	GCGC	1 cut(s)	75
GluI	GCNGC	5 cut(s)	244, 247, 250, 253, 262
HaeII	RGCGCY	1 cut(s)	77
HaeIII	GGCC	5 cut(s)	80, 122, 128, 207, 233
HapII	CCGG	2 cut(s)	204, 237
HgaI	GACGC	1 cut(s)	52
HhaI	GCGC	1 cut(s)	76
Hin1I	GRCGYC	1 cut(s)	44
Hin1II	CATG	2 cut(s)	185, 193
Hin6I	GCGC	1 cut(s)	74
HinP1I	GCGC	1 cut(s)	74
HinfI	GANTC	3 cut(s)	25, 172, 200
HpaII	CCGG	2 cut(s)	204, 237
HphI	GGTGA	1 cut(s)	290
Hpy166II	GTNNAC	3 cut(s)	42, 85, 133
Hpy188I	TCNGA	2 cut(s)	306, 314
Hpy188III	TCNNGA	1 cut(s)	67
Hpy8I	GTNNAC	3 cut(s)	42, 85, 133
HpyAV	CCTTC	1 cut(s)	64
HpyCH4III	ACNGT	1 cut(s)	145
HpyCH4V	TGCA	2 cut(s)	181, 193
HpyF10VI	GCNNNNNNNGC	4 cut(s)	249, 252, 258, 261
Hsp92I	GRCGYC	1 cut(s)	44
Hsp92II	CATG	2 cut(s)	185, 193
HspAI	GCGC	1 cut(s)	74
Kzo9I	GATC	2 cut(s)	184, 309
LmnI	GCTCC	1 cut(s)	38
LpnPI	CCDG	6 cut(s)	62, 86, 94, 161, 217, 250
Lsp1109I	GCAGC	5 cut(s)	255, 258, 261, 264, 273
LweI	GCATC	1 cut(s)	14
MalI	GATC	2 cut(s)	186, 311
MboI	GATC	2 cut(s)	184, 309
MboII	GAAGA	2 cut(s)	6, 169
MflI	RGATCY	1 cut(s)	309
MlsI	TGGCCA	1 cut(s)	122
MluCI	AATT	1 cut(s)	223
MluNI	TGGCCA	1 cut(s)	122
MnlI	CCTC	7 cut(s)	15, 28, 46, 142, 153, 263, 282
Mox20I	TGGCCA	1 cut(s)	122
MscI	TGGCCA	1 cut(s)	122
Msp20I	TGGCCA	1 cut(s)	122
MspA1I	CMGCKG	1 cut(s)	108
MspI	CCGG	2 cut(s)	204, 237
MwoI	GCNNNNNNNGC	4 cut(s)	249, 252, 258, 261
NdeII	GATC	2 cut(s)	184, 309
NlaIII	CATG	2 cut(s)	185, 193
PaeR7I	CTCGAG	1 cut(s)	19
PcsI	WCGNNNNNNNCGW	1 cut(s)	44
PfeI	GAWTC	3 cut(s)	25, 172, 200
PkrI	GCNGC	5 cut(s)	245, 248, 251, 254, 263
PsiI	TTATAA	1 cut(s)	228
PspPI	GGNCC	1 cut(s)	103
PspXI	VCTCGAGB	1 cut(s)	19
PsuI	RGATCY	1 cut(s)	309
RsaI	GTAC	1 cut(s)	86
RsaNI	GTAC	1 cut(s)	85
SatI	GCNGC	5 cut(s)	244, 247, 250, 253, 262
Sau3AI	GATC	2 cut(s)	184, 309
Sau96I	GGNCC	1 cut(s)	103
SetI	ASST	1 cut(s)	35
SfaNI	GCATC	1 cut(s)	14
Sfr274I	CTCGAG	1 cut(s)	19
SinI	GGWCC	1 cut(s)	103
SlaI	CTCGAG	1 cut(s)	19
SmlI	CTYRAG	1 cut(s)	19
SmoI	CTYRAG	1 cut(s)	19
Sse9I	AATT	1 cut(s)	223
SsiI	CCGC	1 cut(s)	106
StyI	CCWWGG	1 cut(s)	123
TaaI	ACNGT	1 cut(s)	145
TaqI	TCGA	2 cut(s)	20, 66
TasI	AATT	1 cut(s)	223
TfiI	GAWTC	3 cut(s)	25, 172, 200
TseI	GCWGC	5 cut(s)	243, 246, 249, 252, 261
TspDTI	ATGAA	1 cut(s)	311
TspGWI	ACGGA	1 cut(s)	150
VpaK11BI	GGWCC	1 cut(s)	103
XhoI	CTCGAG	1 cut(s)	19

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.