Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0002291

Physical Location & Seq

Genomic Coordinates Forward (+)

45372116 .. 45376715

Gene Structure 4600 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0302500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2775 bp

ATGAAAAACAATTCGGTTCCACCTGGTTTTGCGCCTCGTACTTCCTTCACGCTGAAGAGGGCAGAAGTCTCAGTTGTGGGAGTTGAAGAAACCCATAGGTCCAATGCTGTTGTGGATACTTCCAAGCAAGGGCCAATCCAGATGGACGCCGCAACATCTGACATGACTGCCTTGGAGAAGGTCAAAACATTTCTTCACAATAGGCCATGGTTGCTTTTCGACCAAAGTGATCACACTTCAGTGCAATCTGACCCACAACAGTTTCATATGGAACCCCCTCCGGAAACTTGCCCCAATGGTGTTACTCGTGGAAGCCCTGAATCCAGTTATTGTGTAAAGGAACCCCGCCTCCCGAAAGGTGTTACTCGTGGATGTCCAGAATCCGGTTATTGTGTAAAGGTAACAGAAAGGTGGCATCCTGAGGGTGCAGTAATAGACGCTCTTGAAAAGGCTCCTGTTTTCTATCCAACACATGAGGAATTTAAGGACACTCTTAAGTATGTTACAAGTATAAGTGCAAGAGCAGCGCAATATGGTATCTGTCGTATTAGTCCTCCTCCTTCCTGGAAACCTCCATCCCTCATTGAGGAAAACAGCATATGGAATAGTTCCACATTTGCTCCCCATATTCAGCGGATTGATGGGCTGCGGAGTAAAATGGATGGCTCTGATGAGAGCACAAAAAAGAAGAGAAGAATCTCGACAGTGGGTTTGGACTCTGGATTTGAATCTACCTCAAGTCTGGGTGAAACAGGACAGTCTGATGTCAATTGCTTTGAATCGGAACCTGGTCCAGAATTCACTCTTGACAGTTTTAAGAGGTATGCAGATGATTTCAAGCATCAGTATTTCTGCAAAAGTGACATCATAGGTAATCAAGAGCAGTGGGAGCCATTAGTGGAGAATATTGAAGCTGAATATAAACGTATCATTGAAAACCCAACTGAAGGAATCGAGGTGCTTTGTGGAAATTATTTGGAGACTAAAGCGTTTGGCAGTGGATTTCCAACAGTATCACATGATTCCAATCCTTTGGAAACATCAGATTACCCTGATTGCTTGCCATCTGGCTGGAATTTAAATAATCTACCCAGACTCCCTGGTTCTCTTCTTTCTTTTGAAAGCCATGACACATGTCATATTTTAGTGCCTCAGACTCGTGTAGGAATGTGTTTTTCATCTAGTCTTTGGAGAGTTGAAGAGCACCACTTATACTCTTTGTGTTACAATCATCTGGGTGCTCCTAAAGTTTGGTATGGTGTCCCTGGGAAATCCCGCATAAATTTTGAGGCAGCCATGAGGAAGTCCTTTCCAGATTTATTAAAACAGCATAGGCTGGTTAAGCAAGTATCCCCCTCCACATTGAAATCAGAGGACATACCTGTCTTTCGTTGCGTTCAGCGTCCTGGAGAGTTTGTTCTTGTCTTCCCTGGAGCTTATCATTCAGAATTTGATTGTGGCTTTAATTTTTCTGAGAGGGCATGTTTTGCTCCTCTAGACTGGTTGCCTCATGGACAGAATGCTGTTGAACTTTACTCTGAACAGGGGAGGAAAACAGCTATATCCTATGATAAGGTGTTGCTTGGAGCAGCTAGGGAAGCTGTAAGGGCACAATGGGAAATTTCACTGTTGAAGAAGAACAAAAACTCAGAGAATTTACGCTGGAAAAATGCCTGCTTAAAGGATGGGATCTTAACAGAAGCACTGAAGTTGCGTCTCAAGTCTGAAGAGATTCGAAGGAAATATTTTTGCACCTCTTTGAAGTCACAGAGGATGAATTCAGATTTTGATGCTACCATGAAAAGGGAATGCAGCATTTGTTTTTGTGATCTTCATTTCTCTGCAGTAGGTTGTCCTTGTTCTGTAGACAGATACTCATGTCTGTTTCATGCAAAGCAGTTCTGTTTTTGTGCTTGGAGTAACAAGTTTTTCCTCTACCGTCATGAAATCAGCGAGTTAAATCTACTTGTTGAAGCTTTGGAAGGAAAATTAAGTGCAGTCATCAAATGGGCGAAAGATGATCTTGGCCTGTATTTGCATGAACATCTTCCCAAAAGCAATGCACAATCACCTGGGCAGGTAGATAATCCCATCTCTCTCACTGATAAAATAAAGCTGAAACAGTACACATTGGAAGATATAACGCCACCGATTTTCAGTTGTGGCACTGGTCCCATTTATCTCACTGATAAAAGAAAGCTGAAACAGTACACATTGGAAGATATATCGCCACCGATTTTGGGTTTTGGCTCTGCTTCTAGCATAAAGGCGGAATTGAAGGCACGTATGCTGCAATCCACAATTTCAAACATGTTGAAAGCAAACGGTAATCCAATAGCATCCCTTGATGCTGCAACCAGTGCTGCTTCTAGCATCAGGGCTGAATTGAAGGCACGTCTCCTGCAATCTTCAATCTCCAACACATTGAAAGGAAATGATAATCCAACAGGATCACTCAATGCTGCAACAGCCAATGGCAATGGTAGAAATTCTGCTTCTAGCATCGAGTTAGAGATGAAGGCACATGAATTCCAATCAACAATCCCAAATGAATATAAAGGCGTGTGCACTCCGCAACAGCAAGTGGCAGCTGTAGAAACTCCTATTCTGCCTATAGAGGTGGCCTCTGATGTTTCATCTGTAACTTCAAGTGAATCATCCTCAGAATCCGATGATATAATACCAGATCTTGGCAAGCTTTCAGAAGCTAGTCATCAAGCAGAAAGTACGGCACCTCAGAACATTCATATTCTTAGTGATGACAGTGATGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002791 GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0005783 GO:0005788 GO:0005789 GO:0005886 GO:0006355 GO:0006417 GO:0006457 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0010608 GO:0012505 GO:0016020 GO:0016021 GO:0019219 GO:0019222 GO:0031090 GO:0031224 GO:0031323 GO:0031326 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031984 GO:0032268 GO:0032879 GO:0032880 GO:0034248 GO:0042175 GO:0043021 GO:0043022 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0050708 GO:0050789 GO:0050794 GO:0051046 GO:0051049 GO:0051087 GO:0051171 GO:0051223 GO:0051246 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0070201 GO:0071944 GO:0080090 GO:0090087 GO:0098827 GO:0140110 GO:1903506 GO:1903530 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

924

Amino Acids

102.68

Weight (kDa)

5.97

Isoelectric Point (pI)

49.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
JmjN	PF02375	152 - 185	4e-14	jmjN domain
JmjC	PF02373	388 - 494	2.2e-32	JmjC domain, hydroxylase
zf-C5HC2	PF02928	604 - 654	4.1e-13	C5HC2 zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002291)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19510 AT1G75250 AT1G75250
fragaria_vesca	FvH4_2g08980 FvH4_2g39660
malus_domestica	MD08G1030400.v1.1 MD10G1074400.v1.1 MD15G1025600.v1.1
prunus_persica	Prupe.1G378000_v2.0.a1 Prupe.8G095800_v2.0.a1
pyrus_communis	pycom10g05830 pycom15g02200
rosa_chinensis	RchiOBHm_Chr3g0458061 RchiOBHm_Chr6g0264661 RchiOBHm_Chr6g0301221
rosa_laevigata	RLG00000014237 RLG00000025176
rosa_multiflora	Rmu_co8206514.1_g000001 Rmu_co8336827.1_g000001 Rmu_sc0000384.1_g000016 Rmu_sc0000546.1_g000016 Rmu_sc0002592.1_g000001
rosa_roxburghii	Rroxscaffold_171G00441330 Rroxscaffold_175G00432000 Rroxscaffold_6G00421310 Rroxscaffold_7G00203220
rosa_rugosa	Rorug03G0024600 Rorug06G0015100 Rorug06G0302500
rosa_samantha	Rh3AG085300 Rh3BG088000 Rh3CG088600 Rh3DG088900 Rh6AG134100 Rh6AG415800 Rh6BG131600 Rh6CG130300 Rh6CG430300 Rh6DG117300
rosa_wichuraiana	Rw0G012440 Rw6G011610 Rw6G036010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1382
Acc36I	ACCTGC	1 cut(s)	2068
AccB1I	GGYRCC	1 cut(s)	2731
AccB7I	CCANNNNNTGG	1 cut(s)	2690
AccI	GTMKAC	1 cut(s)	1866
AccIII	TCCGGA	1 cut(s)	280
AciI	CCGC	7 cut(s)	150, 346, 634, 649, 1276, 2270, 2573
AclWI	GGATC	2 cut(s)	1697, 2458
AcuI	CTGAAG	5 cut(s)	74, 222, 966, 1727, 1746
AcyI	GRCGYC	1 cut(s)	147
AfaI	GTAC	4 cut(s)	40, 2126, 2210, 2728
AfiI	CCNNNNNNNGG	7 cut(s)	129, 383, 586, 947, 1803, 2240, 2690
AflII	CTTAAG	1 cut(s)	494
AflIII	ACRYGT	2 cut(s)	1133, 2310
AjiI	CACGTC	1 cut(s)	2396
AjnI	CCWGG	8 cut(s)	22, 563, 787, 1099, 1264, 1405, 1429, 2071
AleI	CACNNNNGTG	1 cut(s)	239
AloI	GAACNNNNNNTCC	4 cut(s)	333, 365, 1401, 1433
Alw21I	GWGCWC	4 cut(s)	680, 1206, 1243, 2570
Alw26I	GTCTC	4 cut(s)	73, 974, 1721, 2402
Alw44I	GTGCAC	1 cut(s)	2566
AlwI	GGATC	2 cut(s)	1697, 2458
Aor13HI	TCCGGA	1 cut(s)	280
AoxI	GGCC	4 cut(s)	131, 203, 2026, 2622
ApaLI	GTGCAC	1 cut(s)	2566
ArsI	GACNNNNNNTTYG	4 cut(s)	694, 707, 726, 739
Asp700I	GAANNNNTTC	2 cut(s)	1731, 2046
AspLEI	GCGC	2 cut(s)	34, 529
AspS9I	GGNCC	4 cut(s)	99, 131, 791, 2171
AsuHPI	GGTGA	2 cut(s)	758, 2061
AsuII	TTCGAA	1 cut(s)	1735
AvaII	GGWCC	3 cut(s)	99, 791, 2171
AxyI	CCTNAGG	1 cut(s)	420
BaeGI	GKGCMC	2 cut(s)	1612, 2570
BaeI	ACNNNNGTAYC	2 cut(s)	1864, 1897
BanI	GGYRCC	1 cut(s)	2731
BauI	CACGAG	3 cut(s)	306, 366, 1158
BbsI	GAAGAC	1 cut(s)	1417
Bbv12I	GWGCWC	4 cut(s)	680, 1206, 1243, 2570
BccI	CCATC	8 cut(s)	136, 583, 635, 656, 1072, 1679, 2099, 2762
BceAI	ACGGC	1 cut(s)	2745
BciT130I	CCWGG	8 cut(s)	24, 565, 789, 1101, 1266, 1407, 1431, 2073
BciVI	GTATCC	2 cut(s)	109, 1360
BclI	TGATCA	1 cut(s)	229
BcoDI	GTCTC	4 cut(s)	73, 974, 1721, 2402
BfaI	CTAG	7 cut(s)	1182, 1496, 1593, 2259, 2370, 2499, 2709
BfmI	CTRYAG	4 cut(s)	1842, 1863, 2592, 2613
BfrI	CTTAAG	1 cut(s)	494
BfuAI	ACCTGC	1 cut(s)	2068
BfuI	GTATCC	2 cut(s)	109, 1360
BglII	AGATCT	1 cut(s)	2686
Bme1390I	CCNGG	8 cut(s)	24, 565, 789, 1101, 1266, 1407, 1431, 2073
Bme18I	GGWCC	3 cut(s)	99, 791, 2171
BmgBI	CACGTC	1 cut(s)	2396
BmgT120I	GGNCC	4 cut(s)	99, 131, 791, 2171
BmiI	GGNNCC	8 cut(s)	18, 273, 342, 453, 786, 891, 2173, 2733
BmrFI	CCNGG	8 cut(s)	24, 565, 789, 1101, 1266, 1407, 1431, 2073
BmsI	GCATC	7 cut(s)	424, 850, 1780, 2338, 2348, 2382, 2511
BoxI	GACNNNNGTC	1 cut(s)	1134
BpiI	GAAGAC	1 cut(s)	1417
BplI	GAGNNNNNCTC	2 cut(s)	2609, 2641
BpmI	CTGGAG	2 cut(s)	1428, 1452
Bpu14I	TTCGAA	1 cut(s)	1735
BpuEI	CTTGAG	2 cut(s)	721, 1703
BsaAI	YACGTR	1 cut(s)	2285
BsaBI	GATNNNNATC	2 cut(s)	727, 1026
BsaHI	GRCGYC	1 cut(s)	147
BsaJI	CCNNGG	7 cut(s)	171, 206, 1099, 1264, 1265, 1429, 2072
BsaWI	WCCGGW	2 cut(s)	280, 383
BsaXI	ACNNNNNCTCC	8 cut(s)	333, 363, 604, 634, 1080, 1110, 1401, 1431
Bsc4I	CCNNNNNNNGG	7 cut(s)	129, 383, 586, 947, 1803, 2240, 2690
Bse1I	ACTGG	4 cut(s)	324, 1505, 2173, 2358
Bse21I	CCTNAGG	1 cut(s)	420
Bse3DI	GCAATG	2 cut(s)	2065, 2485
Bse8I	GATNNNNATC	2 cut(s)	727, 1026
BseAI	TCCGGA	1 cut(s)	280
BseBI	CCWGG	8 cut(s)	24, 565, 789, 1101, 1266, 1407, 1431, 2073
BseDI	CCNNGG	7 cut(s)	171, 206, 1099, 1264, 1265, 1429, 2072
BseGI	GGATG	8 cut(s)	377, 415, 575, 667, 1690, 1779, 2339, 2657
BseJI	GATNNNNATC	2 cut(s)	727, 1026
BseLI	CCNNNNNNNGG	7 cut(s)	129, 383, 586, 947, 1803, 2240, 2690
BseMI	GCAATG	2 cut(s)	2065, 2485
BseMII	CTCAG	7 cut(s)	84, 411, 1166, 1464, 1662, 2676, 2750
BseNI	ACTGG	4 cut(s)	324, 1505, 2173, 2358
BseRI	GAGGAG	2 cut(s)	546, 1482
BseSI	GKGCMC	2 cut(s)	1612, 2570
BsgI	GTGCAG	2 cut(s)	447, 2016
BshFI	GGCC	4 cut(s)	133, 205, 2028, 2624
BshNI	GGYRCC	1 cut(s)	2731
BsiHKAI	GWGCWC	4 cut(s)	680, 1206, 1243, 2570
BsiSI	CCGG	2 cut(s)	281, 384
BslFI	GGGAC	2 cut(s)	1247, 2157
BslI	CCNNNNNNNGG	7 cut(s)	129, 383, 586, 947, 1803, 2240, 2690
BsmAI	GTCTC	4 cut(s)	73, 974, 1721, 2402
BsmBI	CGTCTC	2 cut(s)	1721, 2402
BsmFI	GGGAC	2 cut(s)	1247, 2157
BsmI	GAATGC	2 cut(s)	1525, 1814
BsnI	GGCC	4 cut(s)	133, 205, 2028, 2624
Bsp119I	TTCGAA	1 cut(s)	1735
Bsp1286I	GDGCHC	5 cut(s)	680, 1206, 1243, 1612, 2570
Bsp13I	TCCGGA	1 cut(s)	280
Bsp143I	GATC	6 cut(s)	229, 1689, 1828, 2020, 2450, 2686
Bsp19I	CCATGG	1 cut(s)	206
BspACI	CCGC	7 cut(s)	150, 346, 634, 649, 1276, 2270, 2573
BspANI	GGCC	4 cut(s)	133, 205, 2028, 2624
BspCNI	CTCAG	7 cut(s)	83, 412, 1165, 1465, 1661, 2675, 2749
BspEI	TCCGGA	1 cut(s)	280
BspHI	TCATGA	1 cut(s)	1942
BspLI	GGNNCC	8 cut(s)	18, 273, 342, 453, 786, 891, 2173, 2733
BspMAI	CTGCAG	1 cut(s)	1846
BspMI	ACCTGC	1 cut(s)	2068
BspPI	GGATC	2 cut(s)	1697, 2458
BspQI	GCTCTTC	1 cut(s)	1194
BspT104I	TTCGAA	1 cut(s)	1735
BspT107I	GGYRCC	1 cut(s)	2731
BspTI	CTTAAG	1 cut(s)	494
BsrDI	GCAATG	2 cut(s)	2065, 2485
BsrI	ACTGG	4 cut(s)	324, 1505, 2173, 2358
BssECI	CCNNGG	7 cut(s)	171, 206, 1099, 1264, 1265, 1429, 2072
BssMI	GATC	6 cut(s)	229, 1689, 1828, 2020, 2450, 2686
BssNI	GRCGYC	1 cut(s)	147
BssSI	CACGAG	3 cut(s)	306, 366, 1158
BssT1I	CCWWGG	2 cut(s)	171, 206
Bst2BI	CACGAG	3 cut(s)	306, 366, 1158
Bst2UI	CCWGG	8 cut(s)	24, 565, 789, 1101, 1266, 1407, 1431, 2073
Bst6I	CTCTTC	5 cut(s)	50, 683, 1113, 1194, 1722
BstACI	GRCGYC	1 cut(s)	147
BstAFI	CTTAAG	1 cut(s)	494
BstAPI	GCANNNNNTGC	2 cut(s)	1487, 2360
BstBAI	YACGTR	1 cut(s)	2285
BstBI	TTCGAA	1 cut(s)	1735
BstC8I	GCNNGC	3 cut(s)	1061, 1675, 2696
BstDEI	CTNAG	8 cut(s)	70, 420, 1152, 1473, 1648, 2662, 2736, 2753
BstDSI	CCRYGG	1 cut(s)	206
BstENI	CCTNNNNNAGG	1 cut(s)	584
BstF5I	GGATG	8 cut(s)	377, 415, 575, 667, 1690, 1779, 2339, 2657
BstHHI	GCGC	2 cut(s)	34, 529
BstKTI	GATC	6 cut(s)	232, 1692, 1831, 2023, 2453, 2689
BstMAI	GTCTC	4 cut(s)	73, 974, 1721, 2402
BstMBI	GATC	6 cut(s)	229, 1689, 1828, 2020, 2450, 2686
BstMWI	GCNNNNNNNGC	9 cut(s)	211, 524, 889, 1342, 1487, 1598, 1607, 2360, 2468
BstNI	CCWGG	8 cut(s)	24, 565, 789, 1101, 1266, 1407, 1431, 2073
BstNSI	RCATGY	3 cut(s)	1137, 1485, 2314
BstPAI	GACNNNNGTC	1 cut(s)	1134
BstSCI	CCNGG	8 cut(s)	22, 563, 787, 1099, 1264, 1405, 1429, 2071
BstSFI	CTRYAG	4 cut(s)	1842, 1863, 2592, 2613
BstSLI	GKGCMC	2 cut(s)	1612, 2570
BstV2I	GAAGAC	1 cut(s)	1417
BstX2I	RGATCY	2 cut(s)	1689, 2686
BstXI	CCANNNNNNTGG	2 cut(s)	1033, 1071
BstYI	RGATCY	2 cut(s)	1689, 2686
Bsu36I	CCTNAGG	1 cut(s)	420
BsuI	GTATCC	2 cut(s)	109, 1360
BsuRI	GGCC	4 cut(s)	133, 205, 2028, 2624
BtgI	CCRYGG	1 cut(s)	206
BtrI	CACGTC	1 cut(s)	2396
BtsCI	GGATG	8 cut(s)	377, 415, 575, 667, 1690, 1779, 2339, 2657
BtsI	GCAGTG	2 cut(s)	890, 1003
BveI	ACCTGC	1 cut(s)	2068
Cac8I	GCNNGC	3 cut(s)	1061, 1675, 2696
CciI	TCATGA	1 cut(s)	1942
CfoI	GCGC	2 cut(s)	34, 529
Cfr13I	GGNCC	4 cut(s)	99, 131, 791, 2171
CseI	GACGC	4 cut(s)	155, 446, 1391, 1703
CsiI	ACCWGGT	2 cut(s)	22, 787
Csp6I	GTAC	4 cut(s)	39, 2125, 2209, 2727
CspCI	CAANNNNNGTGG	4 cut(s)	866, 901, 2220, 2255
CviQI	GTAC	4 cut(s)	39, 2125, 2209, 2727
DdeI	CTNAG	8 cut(s)	70, 420, 1152, 1473, 1648, 2662, 2736, 2753
DpnI	GATC	6 cut(s)	231, 1691, 1830, 2022, 2452, 2688
DpnII	GATC	6 cut(s)	229, 1689, 1828, 2020, 2450, 2686
DraI	TTTAAA	1 cut(s)	1080
DrdI	GACNNNNNNGTC	1 cut(s)	1382
DseDI	GACNNNNNNGTC	1 cut(s)	1382
Eam1104I	CTCTTC	5 cut(s)	50, 683, 1113, 1194, 1722
EarI	CTCTTC	5 cut(s)	50, 683, 1113, 1194, 1722
EciI	GGCGGA	1 cut(s)	2285
Eco130I	CCWWGG	2 cut(s)	171, 206
Eco47I	GGWCC	3 cut(s)	99, 791, 2171
Eco57I	CTGAAG	5 cut(s)	74, 222, 966, 1727, 1746
Eco81I	CCTNAGG	1 cut(s)	420
EcoNI	CCTNNNNNAGG	1 cut(s)	584
EcoRI	GAATTC	3 cut(s)	797, 1777, 2528
EcoRII	CCWGG	8 cut(s)	22, 563, 787, 1099, 1264, 1405, 1429, 2071
EcoT14I	CCWWGG	2 cut(s)	171, 206
ErhI	CCWWGG	2 cut(s)	171, 206
Esp3I	CGTCTC	2 cut(s)	1721, 2402
FalI	AAGNNNNNCTT	2 cut(s)	2007, 2039
FaqI	GGGAC	2 cut(s)	1247, 2157
FauI	CCCGC	2 cut(s)	353, 1283
FauNDI	CATATG	2 cut(s)	267, 599
FbaI	TGATCA	1 cut(s)	229
FblI	GTMKAC	1 cut(s)	1866
FokI	GGATG	8 cut(s)	384, 402, 562, 674, 1697, 1786, 2326, 2644
FspBI	CTAG	7 cut(s)	1182, 1496, 1593, 2259, 2370, 2499, 2709
GlaI	GCGC	2 cut(s)	33, 528
GsuI	CTGGAG	2 cut(s)	1428, 1452
HaeIII	GGCC	4 cut(s)	133, 205, 2028, 2624
HapII	CCGG	2 cut(s)	281, 384
HgaI	GACGC	4 cut(s)	155, 446, 1391, 1703
HhaI	GCGC	2 cut(s)	34, 529
Hin1I	GRCGYC	1 cut(s)	147
Hin6I	GCGC	2 cut(s)	32, 527
HinP1I	GCGC	2 cut(s)	32, 527
HindIII	AAGCTT	2 cut(s)	1974, 2696
HpaII	CCGG	2 cut(s)	281, 384
HphI	GGTGA	2 cut(s)	758, 2061
Hpy166II	GTNNAC	4 cut(s)	1867, 2127, 2211, 2568
Hpy8I	GTNNAC	4 cut(s)	1867, 2127, 2211, 2568
HpyAV	CCTTC	9 cut(s)	55, 172, 570, 941, 1731, 1976, 2272, 2383, 2512
HpyCH4IV	ACGT	3 cut(s)	925, 2284, 2395
HpyF10VI	GCNNNNNNNGC	9 cut(s)	211, 524, 889, 1342, 1487, 1598, 1607, 2360, 2468
HpyF3I	CTNAG	8 cut(s)	70, 420, 1152, 1473, 1648, 2662, 2736, 2753
HpySE526I	ACGT	3 cut(s)	925, 2284, 2395
Hsp92I	GRCGYC	1 cut(s)	147
HspAI	GCGC	2 cut(s)	32, 527
Kpn2I	TCCGGA	1 cut(s)	280
Ksp22I	TGATCA	1 cut(s)	229
Kzo9I	GATC	6 cut(s)	229, 1689, 1828, 2020, 2450, 2686
LguI	GCTCTTC	1 cut(s)	1194
LmnI	GCTCC	7 cut(s)	457, 625, 889, 1246, 1433, 1495, 1586
LweI	GCATC	7 cut(s)	424, 850, 1780, 2338, 2348, 2382, 2511
MabI	ACCWGGT	2 cut(s)	22, 787
MaeI	CTAG	7 cut(s)	1182, 1496, 1593, 2259, 2370, 2499, 2709
MaeII	ACGT	3 cut(s)	925, 2284, 2395
MaeIII	GTNAC	9 cut(s)	301, 361, 400, 502, 860, 1223, 1764, 1919, 2641
MalI	GATC	6 cut(s)	231, 1691, 1830, 2022, 2452, 2688
MboI	GATC	6 cut(s)	229, 1689, 1828, 2020, 2450, 2686
MfeI	CAATTG	1 cut(s)	769
MflI	RGATCY	2 cut(s)	1689, 2686
MhlI	GDGCHC	5 cut(s)	680, 1206, 1243, 1612, 2570
MlyI	GAGTC	3 cut(s)	710, 1089, 1150
MmeI	TCCRAC	4 cut(s)	491, 1031, 2442, 2468
MroI	TCCGGA	1 cut(s)	280
MroXI	GAANNNNTTC	2 cut(s)	1731, 2046
MslI	CAYNNNNRTG	2 cut(s)	239, 1236
MspA1I	CMGCKG	2 cut(s)	634, 2591
MspCI	CTTAAG	1 cut(s)	494
MspI	CCGG	2 cut(s)	281, 384
MspR9I	CCNGG	8 cut(s)	24, 565, 789, 1101, 1266, 1407, 1431, 2073
MunI	CAATTG	1 cut(s)	769
Mva1269I	GAATGC	2 cut(s)	1525, 1814
MvaI	CCWGG	8 cut(s)	24, 565, 789, 1101, 1266, 1407, 1431, 2073
MwoI	GCNNNNNNNGC	9 cut(s)	211, 524, 889, 1342, 1487, 1598, 1607, 2360, 2468
NcoI	CCATGG	1 cut(s)	206
NdeI	CATATG	2 cut(s)	267, 599
NdeII	GATC	6 cut(s)	229, 1689, 1828, 2020, 2450, 2686
NlaIV	GGNNCC	8 cut(s)	18, 273, 342, 453, 786, 891, 2173, 2733
NmuCI	GTSAC	2 cut(s)	860, 1764
NspI	RCATGY	3 cut(s)	1137, 1485, 2314
NspV	TTCGAA	1 cut(s)	1735
OliI	CACNNNNGTG	1 cut(s)	239
PagI	TCATGA	1 cut(s)	1942
PasI	CCCWGGG	1 cut(s)	1265
PciI	ACATGT	2 cut(s)	1133, 2310
PciSI	GCTCTTC	1 cut(s)	1194
PctI	GAATGC	2 cut(s)	1525, 1814
PdmI	GAANNNNTTC	2 cut(s)	1731, 2046
PflMI	CCANNNNNTGG	1 cut(s)	2690
PfoI	TCCNGGA	2 cut(s)	563, 1405
PleI	GAGTC	3 cut(s)	710, 1089, 1150
PpsI	GAGTC	3 cut(s)	710, 1089, 1150
Ppu21I	YACGTR	1 cut(s)	2285
PscI	ACATGT	2 cut(s)	1133, 2310
PshAI	GACNNNNGTC	1 cut(s)	1134
Psp6I	CCWGG	8 cut(s)	22, 563, 787, 1099, 1264, 1405, 1429, 2071
PspGI	CCWGG	8 cut(s)	22, 563, 787, 1099, 1264, 1405, 1429, 2071
PspN4I	GGNNCC	8 cut(s)	18, 273, 342, 453, 786, 891, 2173, 2733
PspPI	GGNCC	4 cut(s)	99, 131, 791, 2171
PstI	CTGCAG	1 cut(s)	1846
PsuI	RGATCY	2 cut(s)	1689, 2686
PvuII	CAGCTG	1 cut(s)	2591
RsaI	GTAC	4 cut(s)	40, 2126, 2210, 2728
RsaNI	GTAC	4 cut(s)	39, 2125, 2209, 2727
RseI	CAYNNNNRTG	2 cut(s)	239, 1236
SapI	GCTCTTC	1 cut(s)	1194
Sau3AI	GATC	6 cut(s)	229, 1689, 1828, 2020, 2450, 2686
Sau96I	GGNCC	4 cut(s)	99, 131, 791, 2171
SchI	GAGTC	3 cut(s)	710, 1089, 1150
ScrFI	CCNGG	8 cut(s)	24, 565, 789, 1101, 1266, 1407, 1431, 2073
SduI	GDGCHC	5 cut(s)	680, 1206, 1243, 1612, 2570
SexAI	ACCWGGT	2 cut(s)	22, 787
SfaNI	GCATC	7 cut(s)	424, 850, 1780, 2338, 2348, 2382, 2511
SfcI	CTRYAG	4 cut(s)	1842, 1863, 2592, 2613
SfuI	TTCGAA	1 cut(s)	1735
SinI	GGWCC	3 cut(s)	99, 791, 2171
SmiI	ATTTAAAT	1 cut(s)	1080
SmiMI	CAYNNNNRTG	2 cut(s)	239, 1236
SmlI	CTYRAG	3 cut(s)	494, 736, 1718
SmoI	CTYRAG	3 cut(s)	494, 736, 1718
SsiI	CCGC	7 cut(s)	150, 346, 634, 649, 1276, 2270, 2573
SspI	AATATT	2 cut(s)	907, 1745
SspMI	CTAG	7 cut(s)	1182, 1496, 1593, 2259, 2370, 2499, 2709
StyD4I	CCNGG	8 cut(s)	22, 563, 787, 1099, 1264, 1405, 1429, 2071
StyI	CCWWGG	2 cut(s)	171, 206
SwaI	ATTTAAAT	1 cut(s)	1080
TaiI	ACGT	3 cut(s)	928, 2287, 2398
TaqI	TCGA	5 cut(s)	219, 701, 954, 1735, 2505
TatI	WGTACW	2 cut(s)	2124, 2208
TauI	GCSGC	1 cut(s)	152
TseFI	GTSAC	2 cut(s)	860, 1764
Tsp45I	GTSAC	2 cut(s)	860, 1764
Van91I	CCANNNNNTGG	1 cut(s)	2690
Vha464I	CTTAAG	1 cut(s)	494
VneI	GTGCAC	1 cut(s)	2566
VpaK11BI	GGWCC	3 cut(s)	99, 791, 2171
XagI	CCTNNNNNAGG	1 cut(s)	584
XbaI	TCTAGA	1 cut(s)	1495
XceI	RCATGY	3 cut(s)	1137, 1485, 2314
XcmI	CCANNNNNNNNNTGG	1 cut(s)	109
XmiI	GTMKAC	1 cut(s)	1866
XmnI	GAANNNNTTC	2 cut(s)	1731, 2046
XspI	CTAG	7 cut(s)	1182, 1496, 1593, 2259, 2370, 2499, 2709

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.