Rh6AG134100
MYB Family

RADIALIS-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0002291
Physical Location & Seq
Reverse (-)
20322020 .. 20323067
1048 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG134100.1

Sequence Viewer

Length: 306 bp
ATGGCTTCAAGCTCTCTCAAAAAACATGACTCAAACAGCTGCTGGACACCAAAGCAGAACAAGTTGTTTGAGAGGGCTCTGGCCCTTTACGACAAGGATACCCCGGAACGGTGGCAAAATGTGGCCAAGGCTGTTGGCGGGAATAAAACAGCTGAGGAAGTGAAGAGACTCTATGATATCCTACTTGAGGATCTCCGGCAAATTGAGTCCGGCCGGGTTCCTCTTCCCAACTACAAGTCCCTCGTAACCACCACTACAAACGTCGATGAGGAAGAAAGGCTTCTGAAGTATCTTAAGCTGCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

101

Amino Acids

11.67

Weight (kDa)

8.69

Isoelectric Point (pI)

62.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding_2 PF23082 15 - 56 3e-08 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 138
AclWI GGATC 1 cut(s) 198
AcoI YGGCCR 2 cut(s) 123, 211
AcuI CTGAAG 1 cut(s) 305
AfiI CCNNNNNNNGG 2 cut(s) 108, 187
AflII CTTAAG 1 cut(s) 293
AgsI TTSAA 1 cut(s) 9
AluBI AGCT 4 cut(s) 12, 39, 152, 298
AluI AGCT 4 cut(s) 12, 39, 152, 298
Alw26I GTCTC 1 cut(s) 160
AlwI GGATC 1 cut(s) 198
AlwNI CAGNNNCTG 1 cut(s) 42
AoxI GGCC 3 cut(s) 81, 123, 211
ApeKI GCWGC 2 cut(s) 39, 298
Asp700I GAANNNNTTC 1 cut(s) 279
AspS9I GGNCC 1 cut(s) 82
AsuC2I CCSGG 2 cut(s) 104, 215
BalI TGGCCA 1 cut(s) 125
BanII GRGCYC 1 cut(s) 79
BbvCI CCTCAGC 1 cut(s) 153
BbvI GCAGC 2 cut(s) 26, 285
BciVI GTATCC 1 cut(s) 91
BcnI CCSGG 2 cut(s) 104, 215
BcoDI GTCTC 1 cut(s) 160
BfmI CTRYAG 1 cut(s) 299
BfrI CTTAAG 1 cut(s) 293
BfuI GTATCC 1 cut(s) 91
BisI GCNGC 2 cut(s) 40, 299
BlsI GCNGC 2 cut(s) 41, 300
Bme1390I CCNGG 2 cut(s) 104, 215
BmgT120I GGNCC 1 cut(s) 82
BmiI GGNNCC 1 cut(s) 219
BmrFI CCNGG 2 cut(s) 104, 215
Bpu10I CCTNAGC 1 cut(s) 153
BpuEI CTTGAG 1 cut(s) 206
BpuMI CCSGG 2 cut(s) 104, 215
BsaJI CCNNGG 2 cut(s) 102, 126
Bsc4I CCNNNNNNNGG 2 cut(s) 108, 187
BseDI CCNNGG 2 cut(s) 102, 126
BseLI CCNNNNNNNGG 2 cut(s) 108, 187
BseMII CTCAG 1 cut(s) 144
BseX3I CGGCCG 1 cut(s) 211
BseXI GCAGC 2 cut(s) 26, 285
Bsh1285I CGRYCG 1 cut(s) 214
BshFI GGCC 3 cut(s) 83, 125, 213
BsiEI CGRYCG 1 cut(s) 214
BsiSI CCGG 4 cut(s) 104, 196, 210, 214
BslFI GGGAC 1 cut(s) 223
BslI CCNNNNNNNGG 2 cut(s) 108, 187
BsmAI GTCTC 1 cut(s) 160
BsmFI GGGAC 1 cut(s) 223
BsnI GGCC 3 cut(s) 83, 125, 213
Bsp1286I GDGCHC 1 cut(s) 79
Bsp143I GATC 1 cut(s) 190
BspACI CCGC 1 cut(s) 138
BspANI GGCC 3 cut(s) 83, 125, 213
BspCNI CTCAG 1 cut(s) 145
BspLI GGNNCC 1 cut(s) 219
BspMAI CTGCAG 1 cut(s) 303
BspPI GGATC 1 cut(s) 198
BspTI CTTAAG 1 cut(s) 293
BssECI CCNNGG 2 cut(s) 102, 126
BssMI GATC 1 cut(s) 190
BssT1I CCWWGG 1 cut(s) 126
Bst4CI ACNGT 1 cut(s) 111
Bst6I CTCTTC 2 cut(s) 158, 228
BstAFI CTTAAG 1 cut(s) 293
BstDEI CTNAG 1 cut(s) 153
BstENI CCTNNNNNAGG 1 cut(s) 185
BstKTI GATC 1 cut(s) 193
BstMAI GTCTC 1 cut(s) 160
BstMBI GATC 1 cut(s) 190
BstMCI CGRYCG 1 cut(s) 214
BstSCI CCNGG 2 cut(s) 102, 213
BstSFI CTRYAG 1 cut(s) 299
BstV1I GCAGC 2 cut(s) 26, 285
BstX2I RGATCY 1 cut(s) 190
BstYI RGATCY 1 cut(s) 190
BstZI CGGCCG 1 cut(s) 211
BsuI GTATCC 1 cut(s) 91
BsuRI GGCC 3 cut(s) 83, 125, 213
CaiI CAGNNNCTG 1 cut(s) 42
Cfr13I GGNCC 1 cut(s) 82
CviAII CATG 1 cut(s) 26
DdeI CTNAG 1 cut(s) 153
DpnI GATC 1 cut(s) 192
DpnII GATC 1 cut(s) 190
EaeI YGGCCR 2 cut(s) 123, 211
EagI CGGCCG 1 cut(s) 211
Eam1104I CTCTTC 2 cut(s) 158, 228
EarI CTCTTC 2 cut(s) 158, 228
EclXI CGGCCG 1 cut(s) 211
Eco130I CCWWGG 1 cut(s) 126
Eco24I GRGCYC 1 cut(s) 79
Eco32I GATATC 1 cut(s) 178
Eco52I CGGCCG 1 cut(s) 211
Eco57I CTGAAG 1 cut(s) 305
EcoNI CCTNNNNNAGG 1 cut(s) 185
EcoRV GATATC 1 cut(s) 178
EcoT14I CCWWGG 1 cut(s) 126
EcoT38I GRGCYC 1 cut(s) 79
ErhI CCWWGG 1 cut(s) 126
FaeI CATG 1 cut(s) 29
FaiI YATR 2 cut(s) 27, 174
FalI AAGNNNNNCTT 2 cut(s) 264, 296
FaqI GGGAC 1 cut(s) 223
FatI CATG 1 cut(s) 25
FauI CCCGC 1 cut(s) 131
Fnu4HI GCNGC 2 cut(s) 40, 299
FriOI GRGCYC 1 cut(s) 79
Fsp4HI GCNGC 2 cut(s) 40, 299
GluI GCNGC 2 cut(s) 40, 299
HaeIII GGCC 3 cut(s) 83, 125, 213
HapII CCGG 4 cut(s) 104, 196, 210, 214
Hin1II CATG 1 cut(s) 29
HinfI GANTC 3 cut(s) 29, 168, 206
HpaII CCGG 4 cut(s) 104, 196, 210, 214
Hpy188I TCNGA 1 cut(s) 285
Hpy99I CGWCG 1 cut(s) 266
HpyCH4III ACNGT 1 cut(s) 111
HpyCH4IV ACGT 1 cut(s) 261
HpyCH4V TGCA 1 cut(s) 301
HpyF3I CTNAG 1 cut(s) 153
HpySE526I ACGT 1 cut(s) 261
Hsp92II CATG 1 cut(s) 29
Kzo9I GATC 1 cut(s) 190
LpnPI CCDG 6 cut(s) 28, 65, 117, 209, 223, 227
Lsp1109I GCAGC 2 cut(s) 26, 285
MaeII ACGT 1 cut(s) 261
MaeIII GTNAC 1 cut(s) 244
MalI GATC 1 cut(s) 192
MboI GATC 1 cut(s) 190
MboII GAAGA 3 cut(s) 175, 215, 284
MflI RGATCY 1 cut(s) 190
MhlI GDGCHC 1 cut(s) 79
MlsI TGGCCA 1 cut(s) 125
MluCI AATT 1 cut(s) 201
MluNI TGGCCA 1 cut(s) 125
MlyI GAGTC 3 cut(s) 23, 162, 215
MnlI CCTC 6 cut(s) 66, 148, 181, 231, 251, 262
Mox20I TGGCCA 1 cut(s) 125
MroXI GAANNNNTTC 1 cut(s) 279
MscI TGGCCA 1 cut(s) 125
MseI TTAA 1 cut(s) 294
Msp20I TGGCCA 1 cut(s) 125
MspA1I CMGCKG 2 cut(s) 39, 152
MspCI CTTAAG 1 cut(s) 293
MspI CCGG 4 cut(s) 104, 196, 210, 214
MspR9I CCNGG 2 cut(s) 104, 215
NciI CCSGG 2 cut(s) 104, 215
NdeII GATC 1 cut(s) 190
NlaIII CATG 1 cut(s) 29
NlaIV GGNNCC 1 cut(s) 219
PdmI GAANNNNTTC 1 cut(s) 279
PkrI GCNGC 2 cut(s) 41, 300
PleI GAGTC 3 cut(s) 23, 162, 214
PpsI GAGTC 3 cut(s) 23, 162, 214
PspN4I GGNNCC 1 cut(s) 219
PspPI GGNCC 1 cut(s) 82
PstI CTGCAG 1 cut(s) 303
PstNI CAGNNNCTG 1 cut(s) 42
PsuI RGATCY 1 cut(s) 190
PvuII CAGCTG 2 cut(s) 39, 152
SaqAI TTAA 1 cut(s) 294
SatI GCNGC 2 cut(s) 40, 299
Sau3AI GATC 1 cut(s) 190
Sau96I GGNCC 1 cut(s) 82
SchI GAGTC 3 cut(s) 23, 162, 215
ScrFI CCNGG 2 cut(s) 104, 215
SduI GDGCHC 1 cut(s) 79
SetI ASST 5 cut(s) 14, 41, 154, 264, 300
SfcI CTRYAG 1 cut(s) 299
SmlI CTYRAG 2 cut(s) 185, 293
SmoI CTYRAG 2 cut(s) 185, 293
Sse9I AATT 1 cut(s) 201
SsiI CCGC 1 cut(s) 138
StyD4I CCNGG 2 cut(s) 102, 213
StyI CCWWGG 1 cut(s) 126
TaaI ACNGT 1 cut(s) 111
TaiI ACGT 1 cut(s) 264
TaqI TCGA 1 cut(s) 264
TasI AATT 1 cut(s) 201
Tru1I TTAA 1 cut(s) 294
Tru9I TTAA 1 cut(s) 294
TseI GCWGC 2 cut(s) 39, 298
Vha464I CTTAAG 1 cut(s) 293
XagI CCTNNNNNAGG 1 cut(s) 185
XmnI GAANNNNTTC 1 cut(s) 279
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.