Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0002291

Physical Location & Seq

Genomic Coordinates Forward (+)

28426641 .. 28428099

Gene Structure 1459 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g39660.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

ATGGCATCCCTGACTTCGTCGCGGAATTCCAACTCCTCCTCCTGGACGCCGAAGCAGAACAAGCTGTTCGAGAAGGCCCTGGCTGTGTACGACAAGGACACGCAGGACCGGTGGCACAATGTGGCCAAGGCTGTGGGTGGGAAATCAGCTGAGGAAGTCAAGAGGCACTATGAGATTCTGGTGCAGGATCTCATGCATATAGAATCTGGTCAAGTTGCTATACCCAATTACAGGACTACCACTGGAAGCAGCTCTAGAGGAAATGCTGATTATGAACAGAGGCTTATGAAGAATCTGAAGATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002791 GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0005783 GO:0005788 GO:0005789 GO:0005886 GO:0006355 GO:0006417 GO:0006457 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0010608 GO:0012505 GO:0016020 GO:0016021 GO:0019219 GO:0019222 GO:0031090 GO:0031224 GO:0031323 GO:0031326 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031984 GO:0032268 GO:0032879 GO:0032880 GO:0034248 GO:0042175 GO:0043021 GO:0043022 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0050708 GO:0050789 GO:0050794 GO:0051046 GO:0051049 GO:0051087 GO:0051171 GO:0051223 GO:0051246 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0070201 GO:0071944 GO:0080090 GO:0090087 GO:0098827 GO:0140110 GO:1903506 GO:1903530 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

102

Amino Acids

11.41

Weight (kDa)

9.47

Isoelectric Point (pI)

64.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	14 - 57	6.1e-07	Myb-like DNA-binding domain
Myb_DNA-binding_2	PF23082	14 - 57	1e-06	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002291)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19510 AT1G75250 AT1G75250
fragaria_vesca	FvH4_2g08980 FvH4_2g39660
malus_domestica	MD08G1030400.v1.1 MD10G1074400.v1.1 MD15G1025600.v1.1
prunus_persica	Prupe.1G378000_v2.0.a1 Prupe.8G095800_v2.0.a1
pyrus_communis	pycom10g05830 pycom15g02200
rosa_chinensis	RchiOBHm_Chr3g0458061 RchiOBHm_Chr6g0264661 RchiOBHm_Chr6g0301221
rosa_laevigata	RLG00000014237 RLG00000025176
rosa_multiflora	Rmu_co8206514.1_g000001 Rmu_co8336827.1_g000001 Rmu_sc0000384.1_g000016 Rmu_sc0000546.1_g000016 Rmu_sc0002592.1_g000001
rosa_roxburghii	Rroxscaffold_171G00441330 Rroxscaffold_175G00432000 Rroxscaffold_6G00421310 Rroxscaffold_7G00203220
rosa_rugosa	Rorug03G0024600 Rorug06G0015100 Rorug06G0302500
rosa_samantha	Rh3AG085300 Rh3BG088000 Rh3CG088600 Rh3DG088900 Rh6AG134100 Rh6AG415800 Rh6BG131600 Rh6CG130300 Rh6CG430300 Rh6DG117300
rosa_wichuraiana	Rw0G012440 Rw6G011610 Rw6G036010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	22
AciI	CCGC	1 cut(s)	22
AclWI	GGATC	1 cut(s)	195
AcoI	YGGCCR	1 cut(s)	123
AcsI	RAATTY	1 cut(s)	25
AcyI	GRCGYC	1 cut(s)	47
AdeI	CACNNNGTG	1 cut(s)	121
AfaI	GTAC	1 cut(s)	89
AfiI	CCNNNNNNNGG	2 cut(s)	42, 231
AgeI	ACCGGT	1 cut(s)	108
AjnI	CCWGG	2 cut(s)	41, 78
AluBI	AGCT	3 cut(s)	64, 149, 252
AluI	AGCT	3 cut(s)	64, 149, 252
AlwI	GGATC	1 cut(s)	195
AoxI	GGCC	2 cut(s)	75, 123
ApeKI	GCWGC	1 cut(s)	249
ApoI	RAATTY	1 cut(s)	25
AsiGI	ACCGGT	1 cut(s)	108
AspS9I	GGNCC	2 cut(s)	76, 106
AvaII	GGWCC	1 cut(s)	106
BalI	TGGCCA	1 cut(s)	125
BbvCI	CCTCAGC	1 cut(s)	150
BbvI	GCAGC	1 cut(s)	261
BciT130I	CCWGG	2 cut(s)	43, 80
BfaI	CTAG	1 cut(s)	255
BglII	AGATCT	1 cut(s)	300
BisI	GCNGC	1 cut(s)	250
BlsI	GCNGC	1 cut(s)	251
Bme1390I	CCNGG	2 cut(s)	43, 80
Bme18I	GGWCC	1 cut(s)	106
BmgT120I	GGNCC	2 cut(s)	76, 106
BmrFI	CCNGG	2 cut(s)	43, 80
BmsI	GCATC	1 cut(s)	14
Bpu10I	CCTNAGC	1 cut(s)	150
BsaHI	GRCGYC	1 cut(s)	47
BsaJI	CCNNGG	2 cut(s)	78, 126
BsaWI	WCCGGW	1 cut(s)	108
BsaXI	ACNNNNNCTCC	2 cut(s)	23, 53
Bsc4I	CCNNNNNNNGG	2 cut(s)	42, 231
Bse118I	RCCGGY	1 cut(s)	108
Bse1I	ACTGG	1 cut(s)	247
BseBI	CCWGG	2 cut(s)	43, 80
BseDI	CCNNGG	2 cut(s)	78, 126
BseGI	GGATG	1 cut(s)	5
BseLI	CCNNNNNNNGG	2 cut(s)	42, 231
BseMII	CTCAG	1 cut(s)	141
BseNI	ACTGG	1 cut(s)	247
BseRI	GAGGAG	2 cut(s)	25, 28
BseXI	GCAGC	1 cut(s)	261
BsgI	GTGCAG	1 cut(s)	203
Bsh1236I	CGCG	1 cut(s)	22
BshFI	GGCC	2 cut(s)	77, 125
BshTI	ACCGGT	1 cut(s)	108
BsiSI	CCGG	1 cut(s)	109
BslI	CCNNNNNNNGG	2 cut(s)	42, 231
BsnI	GGCC	2 cut(s)	77, 125
Bsp143I	GATC	2 cut(s)	187, 300
BspACI	CCGC	1 cut(s)	22
BspANI	GGCC	2 cut(s)	77, 125
BspCNI	CTCAG	1 cut(s)	142
BspFNI	CGCG	1 cut(s)	22
BspPI	GGATC	1 cut(s)	195
BsrFI	RCCGGY	1 cut(s)	108
BsrI	ACTGG	1 cut(s)	247
BssAI	RCCGGY	1 cut(s)	108
BssECI	CCNNGG	2 cut(s)	78, 126
BssMI	GATC	2 cut(s)	187, 300
BssNI	GRCGYC	1 cut(s)	47
BssT1I	CCWWGG	1 cut(s)	126
Bst2UI	CCWGG	2 cut(s)	43, 80
BstACI	GRCGYC	1 cut(s)	47
BstDEI	CTNAG	1 cut(s)	150
BstF5I	GGATG	1 cut(s)	5
BstFNI	CGCG	1 cut(s)	22
BstKTI	GATC	2 cut(s)	190, 303
BstMBI	GATC	2 cut(s)	187, 300
BstMWI	GCNNNNNNNGC	1 cut(s)	61
BstNI	CCWGG	2 cut(s)	43, 80
BstSCI	CCNGG	2 cut(s)	41, 78
BstUI	CGCG	1 cut(s)	22
BstV1I	GCAGC	1 cut(s)	261
BstX2I	RGATCY	2 cut(s)	187, 300
BstXI	CCANNNNNNTGG	1 cut(s)	133
BstYI	RGATCY	2 cut(s)	187, 300
BsuRI	GGCC	2 cut(s)	77, 125
BtsCI	GGATG	1 cut(s)	5
BtsIMutI	CAGTG	1 cut(s)	240
Cfr10I	RCCGGY	1 cut(s)	108
Cfr13I	GGNCC	2 cut(s)	76, 106
CseI	GACGC	1 cut(s)	55
Csp6I	GTAC	1 cut(s)	88
CspAI	ACCGGT	1 cut(s)	108
CviAII	CATG	1 cut(s)	193
CviJI	RGCY	8 cut(s)	64, 77, 83, 125, 131, 149, 252, 283
CviKI_1	RGCY	8 cut(s)	64, 77, 83, 125, 131, 149, 252, 283
CviQI	GTAC	1 cut(s)	88
DdeI	CTNAG	1 cut(s)	150
DpnI	GATC	2 cut(s)	189, 302
DpnII	GATC	2 cut(s)	187, 300
DraIII	CACNNNGTG	1 cut(s)	121
EaeI	YGGCCR	1 cut(s)	123
Eco130I	CCWWGG	1 cut(s)	126
Eco47I	GGWCC	1 cut(s)	106
EcoO109I	RGGNCCY	1 cut(s)	76
EcoRI	GAATTC	1 cut(s)	25
EcoRII	CCWGG	2 cut(s)	41, 78
EcoT14I	CCWWGG	1 cut(s)	126
EcoT22I	ATGCAT	1 cut(s)	198
ErhI	CCWWGG	1 cut(s)	126
FaeI	CATG	1 cut(s)	196
FaiI	YATR	7 cut(s)	171, 194, 198, 200, 221, 273, 287
FatI	CATG	1 cut(s)	192
Fnu4HI	GCNGC	1 cut(s)	250
Fsp4HI	GCNGC	1 cut(s)	250
FspBI	CTAG	1 cut(s)	255
GluI	GCNGC	1 cut(s)	250
HaeIII	GGCC	2 cut(s)	77, 125
HapII	CCGG	1 cut(s)	109
HgaI	GACGC	1 cut(s)	55
Hin1I	GRCGYC	1 cut(s)	47
Hin1II	CATG	1 cut(s)	196
HinfI	GANTC	3 cut(s)	175, 203, 292
HpaII	CCGG	1 cut(s)	109
Hpy166II	GTNNAC	1 cut(s)	88
Hpy188I	TCNGA	2 cut(s)	297, 305
Hpy188III	TCNNGA	3 cut(s)	70, 160, 255
Hpy8I	GTNNAC	1 cut(s)	88
Hpy99I	CGWCG	1 cut(s)	22
HpyAV	CCTTC	1 cut(s)	67
HpyCH4V	TGCA	2 cut(s)	184, 196
HpyF10VI	GCNNNNNNNGC	1 cut(s)	61
HpyF3I	CTNAG	1 cut(s)	150
Hsp92I	GRCGYC	1 cut(s)	47
Hsp92II	CATG	1 cut(s)	196
Kzo9I	GATC	2 cut(s)	187, 300
Lsp1109I	GCAGC	1 cut(s)	261
LweI	GCATC	1 cut(s)	14
MaeI	CTAG	1 cut(s)	255
MalI	GATC	2 cut(s)	189, 302
MboI	GATC	2 cut(s)	187, 300
MboII	GAAGA	1 cut(s)	301
MflI	RGATCY	2 cut(s)	187, 300
MlsI	TGGCCA	1 cut(s)	125
MluCI	AATT	2 cut(s)	25, 226
MluNI	TGGCCA	1 cut(s)	125
MmeI	TCCRAC	1 cut(s)	54
MnlI	CCTC	6 cut(s)	46, 49, 145, 156, 251, 273
Mox20I	TGGCCA	1 cut(s)	125
Mph1103I	ATGCAT	1 cut(s)	198
MscI	TGGCCA	1 cut(s)	125
Msp20I	TGGCCA	1 cut(s)	125
MspA1I	CMGCKG	1 cut(s)	149
MspI	CCGG	1 cut(s)	109
MspR9I	CCNGG	2 cut(s)	43, 80
MvaI	CCWGG	2 cut(s)	43, 80
MvnI	CGCG	1 cut(s)	22
MwoI	GCNNNNNNNGC	1 cut(s)	61
NdeII	GATC	2 cut(s)	187, 300
NlaIII	CATG	1 cut(s)	196
NsiI	ATGCAT	1 cut(s)	198
PfeI	GAWTC	3 cut(s)	175, 203, 292
PflFI	GACNNNGTC	1 cut(s)	16
PfoI	TCCNGGA	1 cut(s)	41
PinAI	ACCGGT	1 cut(s)	108
PkrI	GCNGC	1 cut(s)	251
Psp6I	CCWGG	2 cut(s)	41, 78
PspGI	CCWGG	2 cut(s)	41, 78
PspPI	GGNCC	2 cut(s)	76, 106
PsuI	RGATCY	2 cut(s)	187, 300
PsyI	GACNNNGTC	1 cut(s)	16
PvuII	CAGCTG	1 cut(s)	149
RsaI	GTAC	1 cut(s)	89
RsaNI	GTAC	1 cut(s)	88
SatI	GCNGC	1 cut(s)	250
Sau3AI	GATC	2 cut(s)	187, 300
Sau96I	GGNCC	2 cut(s)	76, 106
ScrFI	CCNGG	2 cut(s)	43, 80
SetI	ASST	3 cut(s)	66, 151, 254
SfaNI	GCATC	1 cut(s)	14
SinI	GGWCC	1 cut(s)	106
Sse9I	AATT	2 cut(s)	25, 226
SsiI	CCGC	1 cut(s)	22
SspMI	CTAG	1 cut(s)	255
StyD4I	CCNGG	2 cut(s)	41, 78
StyI	CCWWGG	1 cut(s)	126
TaqI	TCGA	1 cut(s)	69
TasI	AATT	2 cut(s)	25, 226
TfiI	GAWTC	3 cut(s)	175, 203, 292
TscAI	CASTG	1 cut(s)	247
TseI	GCWGC	1 cut(s)	249
TspDTI	ATGAA	2 cut(s)	288, 302
TspRI	CASTG	1 cut(s)	247
Tth111I	GACNNNGTC	1 cut(s)	16
VpaK11BI	GGWCC	1 cut(s)	106
XapI	RAATTY	1 cut(s)	25
XbaI	TCTAGA	1 cut(s)	254
XspI	CTAG	1 cut(s)	255
Zsp2I	ATGCAT	1 cut(s)	198

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.