Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0002291

Physical Location & Seq

Genomic Coordinates Forward (+)

6483543 .. 6484179

Gene Structure 637 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g05830.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

ATGGCTTCAAGCTCCCTTAGAAAACACAACTCCAGCTCTTCATGGACACCAAAACAGAACAAGCTGTTTGAAAAAGCACTGGCCTTGTACGACAAAGAGACCCCGGAGCGGTGGCAAAATGTGGCCAAAGCTGTAGGTGGCAATAAAACAGCGGAAGAAGTGAAGAAACACTATGACATCCTTCTAGAAGATCTCAGGCAAATTGAGTCCGGACGGGTTCCTATTCCCAACTACAAGTCCTCCATTGGAAGCAGCACCAGCAGCATCAATGTTGATGAAGAAGAAAGGCTTCTCAAGTATCTTAAGCTGCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

105

Amino Acids

11.84

Weight (kDa)

9.16

Isoelectric Point (pI)

72.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002291)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19510 AT1G75250 AT1G75250
fragaria_vesca	FvH4_2g08980 FvH4_2g39660
malus_domestica	MD08G1030400.v1.1 MD10G1074400.v1.1 MD15G1025600.v1.1
prunus_persica	Prupe.1G378000_v2.0.a1 Prupe.8G095800_v2.0.a1
pyrus_communis	pycom10g05830 pycom15g02200
rosa_chinensis	RchiOBHm_Chr3g0458061 RchiOBHm_Chr6g0264661 RchiOBHm_Chr6g0301221
rosa_laevigata	RLG00000014237 RLG00000025176
rosa_multiflora	Rmu_co8206514.1_g000001 Rmu_co8336827.1_g000001 Rmu_sc0000384.1_g000016 Rmu_sc0000546.1_g000016 Rmu_sc0002592.1_g000001
rosa_roxburghii	Rroxscaffold_171G00441330 Rroxscaffold_175G00432000 Rroxscaffold_6G00421310 Rroxscaffold_7G00203220
rosa_rugosa	Rorug03G0024600 Rorug06G0015100 Rorug06G0302500
rosa_samantha	Rh3AG085300 Rh3BG088000 Rh3CG088600 Rh3DG088900 Rh6AG134100 Rh6AG415800 Rh6BG131600 Rh6CG130300 Rh6CG430300 Rh6DG117300
rosa_wichuraiana	Rw0G012440 Rw6G011610 Rw6G036010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	109
AccIII	TCCGGA	1 cut(s)	209
AciI	CCGC	2 cut(s)	109, 152
AcoI	YGGCCR	1 cut(s)	123
AfaI	GTAC	1 cut(s)	89
AfiI	CCNNNNNNNGG	1 cut(s)	108
AflII	CTTAAG	1 cut(s)	302
AgsI	TTSAA	2 cut(s)	9, 71
AluBI	AGCT	5 cut(s)	12, 36, 64, 131, 307
AluI	AGCT	5 cut(s)	12, 36, 64, 131, 307
Alw26I	GTCTC	1 cut(s)	92
Aor13HI	TCCGGA	1 cut(s)	209
AoxI	GGCC	2 cut(s)	81, 123
ApeKI	GCWGC	3 cut(s)	252, 261, 307
Asp700I	GAANNNNTTC	1 cut(s)	288
AsuC2I	CCSGG	1 cut(s)	104
BalI	TGGCCA	1 cut(s)	125
BbvI	GCAGC	3 cut(s)	264, 273, 294
BcnI	CCSGG	1 cut(s)	104
BcoDI	GTCTC	1 cut(s)	92
BfaI	CTAG	1 cut(s)	185
BfmI	CTRYAG	2 cut(s)	132, 308
BfrI	CTTAAG	1 cut(s)	302
BglII	AGATCT	1 cut(s)	190
BisI	GCNGC	3 cut(s)	253, 262, 308
BlsI	GCNGC	3 cut(s)	254, 263, 309
Bme1390I	CCNGG	1 cut(s)	104
BmiI	GGNNCC	1 cut(s)	219
BmrFI	CCNGG	1 cut(s)	104
BmsI	GCATC	1 cut(s)	273
BpmI	CTGGAG	1 cut(s)	16
BpuEI	CTTGAG	1 cut(s)	278
BpuMI	CCSGG	1 cut(s)	104
BsaI	GGTCTC	1 cut(s)	92
BsaJI	CCNNGG	1 cut(s)	102
BsaWI	WCCGGW	1 cut(s)	209
BsaXI	ACNNNNNCTCC	2 cut(s)	224, 254
Bsc4I	CCNNNNNNNGG	1 cut(s)	108
Bse1I	ACTGG	1 cut(s)	84
BseAI	TCCGGA	1 cut(s)	209
BseDI	CCNNGG	1 cut(s)	102
BseGI	GGATG	1 cut(s)	177
BseLI	CCNNNNNNNGG	1 cut(s)	108
BseMII	CTCAG	1 cut(s)	208
BseNI	ACTGG	1 cut(s)	84
BseXI	GCAGC	3 cut(s)	264, 273, 294
BshFI	GGCC	2 cut(s)	83, 125
BsiSI	CCGG	2 cut(s)	104, 210
BslI	CCNNNNNNNGG	1 cut(s)	108
BsmAI	GTCTC	1 cut(s)	92
BsnI	GGCC	2 cut(s)	83, 125
Bso31I	GGTCTC	1 cut(s)	92
Bsp13I	TCCGGA	1 cut(s)	209
Bsp143I	GATC	1 cut(s)	190
BspACI	CCGC	2 cut(s)	109, 152
BspANI	GGCC	2 cut(s)	83, 125
BspCNI	CTCAG	1 cut(s)	207
BspEI	TCCGGA	1 cut(s)	209
BspLI	GGNNCC	1 cut(s)	219
BspMAI	CTGCAG	1 cut(s)	312
BspQI	GCTCTTC	1 cut(s)	43
BspTI	CTTAAG	1 cut(s)	302
BspTNI	GGTCTC	1 cut(s)	92
BsrBI	CCGCTC	1 cut(s)	109
BsrI	ACTGG	1 cut(s)	84
BssECI	CCNNGG	1 cut(s)	102
BssMI	GATC	1 cut(s)	190
Bst6I	CTCTTC	1 cut(s)	43
BstAFI	CTTAAG	1 cut(s)	302
BstDEI	CTNAG	2 cut(s)	17, 194
BstF5I	GGATG	1 cut(s)	177
BstKTI	GATC	1 cut(s)	193
BstMAI	GTCTC	1 cut(s)	92
BstMBI	GATC	1 cut(s)	190
BstMWI	GCNNNNNNNGC	2 cut(s)	258, 261
BstSCI	CCNGG	1 cut(s)	102
BstSFI	CTRYAG	2 cut(s)	132, 308
BstV1I	GCAGC	3 cut(s)	264, 273, 294
BstX2I	RGATCY	1 cut(s)	190
BstYI	RGATCY	1 cut(s)	190
BsuRI	GGCC	2 cut(s)	83, 125
BtsCI	GGATG	1 cut(s)	177
BtsIMutI	CAGTG	1 cut(s)	77
Csp6I	GTAC	1 cut(s)	88
CviAII	CATG	1 cut(s)	42
CviJI	RGCY	9 cut(s)	5, 12, 36, 64, 83, 125, 131, 289, 307
CviKI_1	RGCY	9 cut(s)	5, 12, 36, 64, 83, 125, 131, 289, 307
CviQI	GTAC	1 cut(s)	88
DdeI	CTNAG	2 cut(s)	17, 194
DpnI	GATC	1 cut(s)	192
DpnII	GATC	1 cut(s)	190
EaeI	YGGCCR	1 cut(s)	123
Eam1104I	CTCTTC	1 cut(s)	43
EarI	CTCTTC	1 cut(s)	43
Eco31I	GGTCTC	1 cut(s)	92
FaeI	CATG	1 cut(s)	45
FaiI	YATR	2 cut(s)	43, 174
FalI	AAGNNNNNCTT	2 cut(s)	273, 305
FatI	CATG	1 cut(s)	41
Fnu4HI	GCNGC	3 cut(s)	253, 262, 308
FokI	GGATG	1 cut(s)	164
Fsp4HI	GCNGC	3 cut(s)	253, 262, 308
FspBI	CTAG	1 cut(s)	185
GluI	GCNGC	3 cut(s)	253, 262, 308
GsuI	CTGGAG	1 cut(s)	16
HaeIII	GGCC	2 cut(s)	83, 125
HapII	CCGG	2 cut(s)	104, 210
Hin1II	CATG	1 cut(s)	45
HinfI	GANTC	1 cut(s)	206
HpaII	CCGG	2 cut(s)	104, 210
Hpy188III	TCNNGA	2 cut(s)	185, 210
HpyAV	CCTTC	1 cut(s)	191
HpyCH4V	TGCA	1 cut(s)	310
HpyF10VI	GCNNNNNNNGC	2 cut(s)	258, 261
HpyF3I	CTNAG	2 cut(s)	17, 194
Hsp92II	CATG	1 cut(s)	45
Kpn2I	TCCGGA	1 cut(s)	209
Kzo9I	GATC	1 cut(s)	190
LguI	GCTCTTC	1 cut(s)	43
LmnI	GCTCC	2 cut(s)	17, 106
LpnPI	CCDG	6 cut(s)	46, 65, 117, 181, 223, 271
Lsp1109I	GCAGC	3 cut(s)	264, 273, 294
LweI	GCATC	1 cut(s)	273
MaeI	CTAG	1 cut(s)	185
MalI	GATC	1 cut(s)	192
MbiI	CCGCTC	1 cut(s)	109
MboI	GATC	1 cut(s)	190
MboII	GAAGA	6 cut(s)	30, 167, 175, 200, 290, 293
MflI	RGATCY	1 cut(s)	190
MlsI	TGGCCA	1 cut(s)	125
MluCI	AATT	1 cut(s)	201
MluNI	TGGCCA	1 cut(s)	125
MlyI	GAGTC	1 cut(s)	215
MnlI	CCTC	1 cut(s)	250
Mox20I	TGGCCA	1 cut(s)	125
MroI	TCCGGA	1 cut(s)	209
MroXI	GAANNNNTTC	1 cut(s)	288
MscI	TGGCCA	1 cut(s)	125
MseI	TTAA	1 cut(s)	303
Msp20I	TGGCCA	1 cut(s)	125
MspA1I	CMGCKG	1 cut(s)	152
MspCI	CTTAAG	1 cut(s)	302
MspI	CCGG	2 cut(s)	104, 210
MspR9I	CCNGG	1 cut(s)	104
MwoI	GCNNNNNNNGC	2 cut(s)	258, 261
NciI	CCSGG	1 cut(s)	104
NdeII	GATC	1 cut(s)	190
NlaIII	CATG	1 cut(s)	45
NlaIV	GGNNCC	1 cut(s)	219
PciSI	GCTCTTC	1 cut(s)	43
PdmI	GAANNNNTTC	1 cut(s)	288
PkrI	GCNGC	3 cut(s)	254, 263, 309
PleI	GAGTC	1 cut(s)	214
PpsI	GAGTC	1 cut(s)	214
PspN4I	GGNNCC	1 cut(s)	219
PstI	CTGCAG	1 cut(s)	312
PsuI	RGATCY	1 cut(s)	190
RsaI	GTAC	1 cut(s)	89
RsaNI	GTAC	1 cut(s)	88
SapI	GCTCTTC	1 cut(s)	43
SaqAI	TTAA	1 cut(s)	303
SatI	GCNGC	3 cut(s)	253, 262, 308
Sau3AI	GATC	1 cut(s)	190
SchI	GAGTC	1 cut(s)	215
ScrFI	CCNGG	1 cut(s)	104
SetI	ASST	6 cut(s)	14, 38, 66, 133, 139, 309
SfaNI	GCATC	1 cut(s)	273
SfcI	CTRYAG	2 cut(s)	132, 308
SmlI	CTYRAG	2 cut(s)	293, 302
SmoI	CTYRAG	2 cut(s)	293, 302
Sse9I	AATT	1 cut(s)	201
SsiI	CCGC	2 cut(s)	109, 152
SspMI	CTAG	1 cut(s)	185
StyD4I	CCNGG	1 cut(s)	102
TasI	AATT	1 cut(s)	201
Tru1I	TTAA	1 cut(s)	303
Tru9I	TTAA	1 cut(s)	303
TscAI	CASTG	1 cut(s)	84
TseI	GCWGC	3 cut(s)	252, 261, 307
TspDTI	ATGAA	2 cut(s)	30, 291
TspRI	CASTG	1 cut(s)	84
Vha464I	CTTAAG	1 cut(s)	302
XbaI	TCTAGA	1 cut(s)	184
XmnI	GAANNNNTTC	1 cut(s)	288
XspI	CTAG	1 cut(s)	185

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.