Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0002291

Physical Location & Seq

Genomic Coordinates Forward (+)

2186847 .. 2189474

Gene Structure 2628 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1030400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

ATGGCATCGGTTTCTTCCTCGAGGAATTTCAACTCCTCGTGGACGCCGAAGGAGAACAAGCTGTTCGAGAAGGCGCTGGCCGTGTACGACAAGGACACGCAGGACCGCTGGCATAATGTGGCCAAGGCCGTCGGCGGAAAATCTGCGGAGGAAGTAAAGAGGCACTACGAGATTCTGGTGCATGATCTCATGCACATAGAATCCGGCCATGTCCCTATACCAAATTATAAGTCCGCCGGCGGCAGCGGCAGCGGCAGCAACAGAGGATTTGGTGACGAGCAGAGGCTTATGAAAAATTTGAAGATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002791 GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0005783 GO:0005788 GO:0005789 GO:0005886 GO:0006355 GO:0006417 GO:0006457 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0010608 GO:0012505 GO:0016020 GO:0016021 GO:0019219 GO:0019222 GO:0031090 GO:0031224 GO:0031323 GO:0031326 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031984 GO:0032268 GO:0032879 GO:0032880 GO:0034248 GO:0042175 GO:0043021 GO:0043022 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0050708 GO:0050789 GO:0050794 GO:0051046 GO:0051049 GO:0051087 GO:0051171 GO:0051223 GO:0051246 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0070201 GO:0071944 GO:0080090 GO:0090087 GO:0098827 GO:0140110 GO:1903506 GO:1903530 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

103

Amino Acids

11.37

Weight (kDa)

9.26

Isoelectric Point (pI)

61.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	13 - 56	2.9e-08	Myb-like DNA-binding domain
Myb_DNA-binding_2	PF23082	13 - 56	1.5e-07	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002291)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19510 AT1G75250 AT1G75250
fragaria_vesca	FvH4_2g08980 FvH4_2g39660
malus_domestica	MD08G1030400.v1.1 MD10G1074400.v1.1 MD15G1025600.v1.1
prunus_persica	Prupe.1G378000_v2.0.a1 Prupe.8G095800_v2.0.a1
pyrus_communis	pycom10g05830 pycom15g02200
rosa_chinensis	RchiOBHm_Chr3g0458061 RchiOBHm_Chr6g0264661 RchiOBHm_Chr6g0301221
rosa_laevigata	RLG00000014237 RLG00000025176
rosa_multiflora	Rmu_co8206514.1_g000001 Rmu_co8336827.1_g000001 Rmu_sc0000384.1_g000016 Rmu_sc0000546.1_g000016 Rmu_sc0002592.1_g000001
rosa_roxburghii	Rroxscaffold_171G00441330 Rroxscaffold_175G00432000 Rroxscaffold_6G00421310 Rroxscaffold_7G00203220
rosa_rugosa	Rorug03G0024600 Rorug06G0015100 Rorug06G0302500
rosa_samantha	Rh3AG085300 Rh3BG088000 Rh3CG088600 Rh3DG088900 Rh6AG134100 Rh6AG415800 Rh6BG131600 Rh6CG130300 Rh6CG430300 Rh6DG117300
rosa_wichuraiana	Rw0G012440 Rw6G011610 Rw6G036010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	228
AbsI	CCTCGAGG	1 cut(s)	19
AciI	CCGC	7 cut(s)	106, 135, 146, 234, 240, 246, 252
AcoI	YGGCCR	3 cut(s)	78, 120, 205
AcsI	RAATTY	2 cut(s)	25, 295
AcyI	GRCGYC	1 cut(s)	44
AfaI	GTAC	1 cut(s)	86
AgsI	TTSAA	2 cut(s)	31, 301
AluBI	AGCT	1 cut(s)	61
AluI	AGCT	1 cut(s)	61
Ama87I	CYCGRG	1 cut(s)	19
AoxI	GGCC	4 cut(s)	78, 120, 126, 205
ApeKI	GCWGC	3 cut(s)	243, 249, 255
ApoI	RAATTY	2 cut(s)	25, 295
ArsI	GACNNNNNNTTYG	2 cut(s)	215, 247
AspLEI	GCGC	1 cut(s)	76
AspS9I	GGNCC	1 cut(s)	103
AsuHPI	GGTGA	1 cut(s)	284
AvaI	CYCGRG	1 cut(s)	19
AvaII	GGWCC	1 cut(s)	103
BalI	TGGCCA	1 cut(s)	122
BauI	CACGAG	1 cut(s)	37
BbvI	GCAGC	3 cut(s)	255, 261, 267
BceAI	ACGGC	2 cut(s)	65, 113
BfoI	RGCGCY	1 cut(s)	77
BglII	AGATCT	1 cut(s)	303
BisI	GCNGC	6 cut(s)	241, 244, 247, 250, 253, 256
BlsI	GCNGC	6 cut(s)	242, 245, 248, 251, 254, 257
Bme18I	GGWCC	1 cut(s)	103
BmeT110I	CYCGRG	1 cut(s)	19
BmgT120I	GGNCC	1 cut(s)	103
BmsI	GCATC	1 cut(s)	14
BsaHI	GRCGYC	1 cut(s)	44
BsaJI	CCNNGG	1 cut(s)	123
Bse118I	RCCGGY	1 cut(s)	236
BseDI	CCNNGG	1 cut(s)	123
BseRI	GAGGAG	1 cut(s)	25
BseXI	GCAGC	3 cut(s)	255, 261, 267
BshFI	GGCC	4 cut(s)	80, 122, 128, 207
BsiHKCI	CYCGRG	1 cut(s)	19
BsiSI	CCGG	2 cut(s)	204, 237
BslFI	GGGAC	1 cut(s)	197
BsmFI	GGGAC	1 cut(s)	197
BsnI	GGCC	4 cut(s)	80, 122, 128, 207
BsoBI	CYCGRG	1 cut(s)	19
Bsp143I	GATC	2 cut(s)	184, 303
BspACI	CCGC	7 cut(s)	106, 135, 146, 234, 240, 246, 252
BspANI	GGCC	4 cut(s)	80, 122, 128, 207
BsrFI	RCCGGY	1 cut(s)	236
BssAI	RCCGGY	1 cut(s)	236
BssECI	CCNNGG	1 cut(s)	123
BssMI	GATC	2 cut(s)	184, 303
BssNI	GRCGYC	1 cut(s)	44
BssSI	CACGAG	1 cut(s)	37
BssT1I	CCWWGG	1 cut(s)	123
Bst2BI	CACGAG	1 cut(s)	37
BstACI	GRCGYC	1 cut(s)	44
BstC8I	GCNNGC	3 cut(s)	78, 110, 238
BstH2I	RGCGCY	1 cut(s)	77
BstHHI	GCGC	1 cut(s)	76
BstKTI	GATC	2 cut(s)	187, 306
BstMBI	GATC	2 cut(s)	184, 303
BstMWI	GCNNNNNNNGC	4 cut(s)	246, 249, 252, 255
BstV1I	GCAGC	3 cut(s)	255, 261, 267
BstX2I	RGATCY	1 cut(s)	303
BstYI	RGATCY	1 cut(s)	303
BsuRI	GGCC	4 cut(s)	80, 122, 128, 207
Cac8I	GCNNGC	3 cut(s)	78, 110, 238
CfoI	GCGC	1 cut(s)	76
Cfr10I	RCCGGY	1 cut(s)	236
Cfr13I	GGNCC	1 cut(s)	103
CseI	GACGC	1 cut(s)	52
Csp6I	GTAC	1 cut(s)	85
CviAII	CATG	3 cut(s)	182, 190, 209
CviJI	RGCY	6 cut(s)	61, 80, 122, 128, 207, 286
CviKI_1	RGCY	6 cut(s)	61, 80, 122, 128, 207, 286
CviQI	GTAC	1 cut(s)	85
DpnI	GATC	2 cut(s)	186, 305
DpnII	GATC	2 cut(s)	184, 303
EaeI	YGGCCR	3 cut(s)	78, 120, 205
EciI	GGCGGA	2 cut(s)	150, 223
Eco130I	CCWWGG	1 cut(s)	123
Eco47I	GGWCC	1 cut(s)	103
Eco88I	CYCGRG	1 cut(s)	19
EcoT14I	CCWWGG	1 cut(s)	123
ErhI	CCWWGG	1 cut(s)	123
FaeI	CATG	3 cut(s)	185, 193, 212
FaiI	YATR	8 cut(s)	114, 183, 191, 197, 210, 218, 228, 290
FaqI	GGGAC	1 cut(s)	197
FatI	CATG	3 cut(s)	181, 189, 208
Fnu4HI	GCNGC	6 cut(s)	241, 244, 247, 250, 253, 256
Fsp4HI	GCNGC	6 cut(s)	241, 244, 247, 250, 253, 256
GlaI	GCGC	1 cut(s)	75
GluI	GCNGC	6 cut(s)	241, 244, 247, 250, 253, 256
HaeII	RGCGCY	1 cut(s)	77
HaeIII	GGCC	4 cut(s)	80, 122, 128, 207
HapII	CCGG	2 cut(s)	204, 237
HgaI	GACGC	1 cut(s)	52
HhaI	GCGC	1 cut(s)	76
Hin1I	GRCGYC	1 cut(s)	44
Hin1II	CATG	3 cut(s)	185, 193, 212
Hin6I	GCGC	1 cut(s)	74
HinP1I	GCGC	1 cut(s)	74
HinfI	GANTC	2 cut(s)	172, 200
HpaII	CCGG	2 cut(s)	204, 237
HphI	GGTGA	1 cut(s)	284
Hpy166II	GTNNAC	2 cut(s)	42, 85
Hpy188I	TCNGA	1 cut(s)	308
Hpy188III	TCNNGA	1 cut(s)	67
Hpy8I	GTNNAC	2 cut(s)	42, 85
Hpy99I	CGWCG	1 cut(s)	134
HpyAV	CCTTC	2 cut(s)	43, 64
HpyCH4V	TGCA	2 cut(s)	181, 193
HpyF10VI	GCNNNNNNNGC	4 cut(s)	246, 249, 252, 255
Hsp92I	GRCGYC	1 cut(s)	44
Hsp92II	CATG	3 cut(s)	185, 193, 212
HspAI	GCGC	1 cut(s)	74
KroI	GCCGGC	1 cut(s)	236
KroNI	GCCGGC	1 cut(s)	238
Kzo9I	GATC	2 cut(s)	184, 303
LpnPI	CCDG	6 cut(s)	62, 86, 94, 161, 217, 250
Lsp1109I	GCAGC	3 cut(s)	255, 261, 267
LweI	GCATC	1 cut(s)	14
MaeIII	GTNAC	1 cut(s)	272
MalI	GATC	2 cut(s)	186, 305
MboI	GATC	2 cut(s)	184, 303
MboII	GAAGA	1 cut(s)	6
MflI	RGATCY	1 cut(s)	303
MlsI	TGGCCA	1 cut(s)	122
MluCI	AATT	3 cut(s)	25, 223, 295
MluNI	TGGCCA	1 cut(s)	122
MnlI	CCTC	7 cut(s)	15, 28, 46, 142, 153, 257, 276
Mox20I	TGGCCA	1 cut(s)	122
MreI	CGCCGGCG	1 cut(s)	236
MroNI	GCCGGC	1 cut(s)	236
MscI	TGGCCA	1 cut(s)	122
Msp20I	TGGCCA	1 cut(s)	122
MspA1I	CMGCKG	3 cut(s)	108, 246, 252
MspI	CCGG	2 cut(s)	204, 237
MwoI	GCNNNNNNNGC	4 cut(s)	246, 249, 252, 255
NaeI	GCCGGC	1 cut(s)	238
NdeII	GATC	2 cut(s)	184, 303
NgoMIV	GCCGGC	1 cut(s)	236
NlaIII	CATG	3 cut(s)	185, 193, 212
NmuCI	GTSAC	1 cut(s)	272
PaeR7I	CTCGAG	1 cut(s)	19
PcsI	WCGNNNNNNNCGW	1 cut(s)	44
PdiI	GCCGGC	1 cut(s)	238
PfeI	GAWTC	2 cut(s)	172, 200
PkrI	GCNGC	6 cut(s)	242, 245, 248, 251, 254, 257
PsiI	TTATAA	1 cut(s)	228
PspPI	GGNCC	1 cut(s)	103
PspXI	VCTCGAGB	1 cut(s)	19
PsuI	RGATCY	1 cut(s)	303
RsaI	GTAC	1 cut(s)	86
RsaNI	GTAC	1 cut(s)	85
SatI	GCNGC	6 cut(s)	241, 244, 247, 250, 253, 256
Sau3AI	GATC	2 cut(s)	184, 303
Sau96I	GGNCC	1 cut(s)	103
SetI	ASST	1 cut(s)	63
SfaNI	GCATC	1 cut(s)	14
Sfr274I	CTCGAG	1 cut(s)	19
SgrAI	CRCCGGYG	1 cut(s)	236
SinI	GGWCC	1 cut(s)	103
SlaI	CTCGAG	1 cut(s)	19
SmlI	CTYRAG	1 cut(s)	19
SmoI	CTYRAG	1 cut(s)	19
Sse9I	AATT	3 cut(s)	25, 223, 295
SsiI	CCGC	7 cut(s)	106, 135, 146, 234, 240, 246, 252
StyI	CCWWGG	1 cut(s)	123
TaqI	TCGA	2 cut(s)	20, 66
TasI	AATT	3 cut(s)	25, 223, 295
TauI	GCSGC	3 cut(s)	243, 249, 255
TfiI	GAWTC	2 cut(s)	172, 200
TseFI	GTSAC	1 cut(s)	272
TseI	GCWGC	3 cut(s)	243, 249, 255
Tsp45I	GTSAC	1 cut(s)	272
TspDTI	ATGAA	1 cut(s)	305
VpaK11BI	GGWCC	1 cut(s)	103
XapI	RAATTY	2 cut(s)	25, 295
XhoI	CTCGAG	1 cut(s)	19

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.