Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0002291

Physical Location & Seq

Genomic Coordinates Reverse (-)

42778021 .. 42778703

Gene Structure 683 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000025176

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGCTGATCGACACAACACGGCCAATGGGAGGCGGTCGTGTCGGCCACGAAGATGAGTCTTCTAATTCATTGACTGAAGCCAGACCTCTTCTCTGCATTCTTGCACCTTCCCACTCTCAAACTCCACAACCCAGCTCCTCTAATTATTTTTGGTTCATTTCTTCTCCTAATCGAGCAATGGCATCCCTGACTTTGTCTCGGAATTCCAACTCCTCCTGGACGCCGAAGCAGAACAAGCTGTTTGAGAATGCCCTAGCTGTGTACGACAAGGACACACAGGACCGGTGGCACAATTTAGCCAAGGCTGTGGGTGGAAAATCAGCCGAGGAAGTCAAGAGGCACTATGAGATTCTGGTGCAGGATCTCATGCATATAGAATCTGGTCAAGTCGCTCTACCCAATTACAGGGCCACTGGAAGCAACTCAAGACTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002791 GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0005783 GO:0005788 GO:0005789 GO:0005886 GO:0006355 GO:0006417 GO:0006457 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0010608 GO:0012505 GO:0016020 GO:0016021 GO:0019219 GO:0019222 GO:0031090 GO:0031224 GO:0031323 GO:0031326 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031984 GO:0032268 GO:0032879 GO:0032880 GO:0034248 GO:0042175 GO:0043021 GO:0043022 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0050708 GO:0050789 GO:0050794 GO:0051046 GO:0051049 GO:0051087 GO:0051171 GO:0051223 GO:0051246 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0070201 GO:0071944 GO:0080090 GO:0090087 GO:0098827 GO:0140110 GO:1903506 GO:1903530 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

145

Amino Acids

16.02

Weight (kDa)

7.93

Isoelectric Point (pI)

70.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002291)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19510 AT1G75250 AT1G75250
fragaria_vesca	FvH4_2g08980 FvH4_2g39660
malus_domestica	MD08G1030400.v1.1 MD10G1074400.v1.1 MD15G1025600.v1.1
prunus_persica	Prupe.1G378000_v2.0.a1 Prupe.8G095800_v2.0.a1
pyrus_communis	pycom10g05830 pycom15g02200
rosa_chinensis	RchiOBHm_Chr3g0458061 RchiOBHm_Chr6g0264661 RchiOBHm_Chr6g0301221
rosa_laevigata	RLG00000014237 RLG00000025176
rosa_multiflora	Rmu_co8206514.1_g000001 Rmu_co8336827.1_g000001 Rmu_sc0000384.1_g000016 Rmu_sc0000546.1_g000016 Rmu_sc0002592.1_g000001
rosa_roxburghii	Rroxscaffold_171G00441330 Rroxscaffold_175G00432000 Rroxscaffold_6G00421310 Rroxscaffold_7G00203220
rosa_rugosa	Rorug03G0024600 Rorug06G0015100 Rorug06G0302500
rosa_samantha	Rh3AG085300 Rh3BG088000 Rh3CG088600 Rh3DG088900 Rh6AG134100 Rh6AG415800 Rh6BG131600 Rh6CG130300 Rh6CG430300 Rh6DG117300
rosa_wichuraiana	Rw0G012440 Rw6G011610 Rw6G036010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	33
AclWI	GGATC	1 cut(s)	369
AcoI	YGGCCR	2 cut(s)	20, 43
AcsI	RAATTY	1 cut(s)	202
AcuI	CTGAAG	1 cut(s)	96
AcyI	GRCGYC	1 cut(s)	221
AfaI	GTAC	1 cut(s)	263
AfiI	CCNNNNNNNGG	2 cut(s)	29, 405
AgeI	ACCGGT	1 cut(s)	282
AjnI	CCWGG	1 cut(s)	215
AluBI	AGCT	3 cut(s)	135, 238, 257
AluI	AGCT	3 cut(s)	135, 238, 257
Alw26I	GTCTC	1 cut(s)	201
AlwI	GGATC	1 cut(s)	369
AoxI	GGCC	3 cut(s)	20, 43, 408
ApoI	RAATTY	1 cut(s)	202
AsiGI	ACCGGT	1 cut(s)	282
AspS9I	GGNCC	2 cut(s)	280, 408
AvaII	GGWCC	1 cut(s)	280
BbsI	GAAGAC	1 cut(s)	51
BceAI	ACGGC	1 cut(s)	35
BciT130I	CCWGG	1 cut(s)	217
BcoDI	GTCTC	1 cut(s)	201
BfaI	CTAG	2 cut(s)	254, 433
Bme1390I	CCNGG	1 cut(s)	217
Bme18I	GGWCC	1 cut(s)	280
BmgT120I	GGNCC	2 cut(s)	280, 408
BmrFI	CCNGG	1 cut(s)	217
BmsI	GCATC	1 cut(s)	191
BpiI	GAAGAC	1 cut(s)	51
BpuEI	CTTGAG	1 cut(s)	409
BsaHI	GRCGYC	1 cut(s)	221
BsaJI	CCNNGG	2 cut(s)	300, 324
BsaWI	WCCGGW	1 cut(s)	282
Bsc4I	CCNNNNNNNGG	2 cut(s)	29, 405
Bse118I	RCCGGY	1 cut(s)	282
Bse1I	ACTGG	1 cut(s)	418
Bse3DI	GCAATG	1 cut(s)	183
BseBI	CCWGG	1 cut(s)	217
BseDI	CCNNGG	2 cut(s)	300, 324
BseGI	GGATG	1 cut(s)	182
BseLI	CCNNNNNNNGG	2 cut(s)	29, 405
BseMI	GCAATG	1 cut(s)	183
BseNI	ACTGG	1 cut(s)	418
BseRI	GAGGAG	2 cut(s)	127, 202
BseYI	CCCAGC	1 cut(s)	131
BsgI	GTGCAG	1 cut(s)	377
Bsh1285I	CGRYCG	1 cut(s)	37
BshFI	GGCC	3 cut(s)	22, 45, 410
BshTI	ACCGGT	1 cut(s)	282
BsiEI	CGRYCG	1 cut(s)	37
BsiSI	CCGG	1 cut(s)	283
BslI	CCNNNNNNNGG	2 cut(s)	29, 405
BsmAI	GTCTC	1 cut(s)	201
BsmI	GAATGC	2 cut(s)	96, 253
BsnI	GGCC	3 cut(s)	22, 45, 410
Bsp143I	GATC	2 cut(s)	6, 361
BspACI	CCGC	1 cut(s)	33
BspANI	GGCC	3 cut(s)	22, 45, 410
BspPI	GGATC	1 cut(s)	369
BsrDI	GCAATG	1 cut(s)	183
BsrFI	RCCGGY	1 cut(s)	282
BsrI	ACTGG	1 cut(s)	418
BssAI	RCCGGY	1 cut(s)	282
BssECI	CCNNGG	2 cut(s)	300, 324
BssMI	GATC	2 cut(s)	6, 361
BssNI	GRCGYC	1 cut(s)	221
BssT1I	CCWWGG	1 cut(s)	300
Bst2UI	CCWGG	1 cut(s)	217
Bst6I	CTCTTC	1 cut(s)	93
BstACI	GRCGYC	1 cut(s)	221
BstF5I	GGATG	1 cut(s)	182
BstKTI	GATC	2 cut(s)	9, 364
BstMAI	GTCTC	1 cut(s)	201
BstMBI	GATC	2 cut(s)	6, 361
BstMCI	CGRYCG	1 cut(s)	37
BstMWI	GCNNNNNNNGC	1 cut(s)	235
BstNI	CCWGG	1 cut(s)	217
BstSCI	CCNGG	1 cut(s)	215
BstV2I	GAAGAC	1 cut(s)	51
BstX2I	RGATCY	1 cut(s)	361
BstXI	CCANNNNNNTGG	1 cut(s)	307
BstYI	RGATCY	1 cut(s)	361
BsuRI	GGCC	3 cut(s)	22, 45, 410
BtsCI	GGATG	1 cut(s)	182
BtsIMutI	CAGTG	1 cut(s)	411
Cfr10I	RCCGGY	1 cut(s)	282
Cfr13I	GGNCC	2 cut(s)	280, 408
CseI	GACGC	1 cut(s)	229
Csp6I	GTAC	1 cut(s)	262
CspAI	ACCGGT	1 cut(s)	282
CviAII	CATG	1 cut(s)	367
CviQI	GTAC	1 cut(s)	262
DpnI	GATC	2 cut(s)	8, 363
DpnII	GATC	2 cut(s)	6, 361
EaeI	YGGCCR	2 cut(s)	20, 43
Eam1104I	CTCTTC	1 cut(s)	93
EarI	CTCTTC	1 cut(s)	93
Eco130I	CCWWGG	1 cut(s)	300
Eco47I	GGWCC	1 cut(s)	280
Eco57I	CTGAAG	1 cut(s)	96
EcoRI	GAATTC	1 cut(s)	202
EcoRII	CCWGG	1 cut(s)	215
EcoT14I	CCWWGG	1 cut(s)	300
EcoT22I	ATGCAT	1 cut(s)	372
ErhI	CCWWGG	1 cut(s)	300
FaeI	CATG	1 cut(s)	370
FaiI	YATR	4 cut(s)	345, 368, 372, 374
FatI	CATG	1 cut(s)	366
FokI	GGATG	1 cut(s)	169
FspBI	CTAG	2 cut(s)	254, 433
GsaI	CCCAGC	1 cut(s)	135
HaeIII	GGCC	3 cut(s)	22, 45, 410
HapII	CCGG	1 cut(s)	283
HgaI	GACGC	1 cut(s)	229
Hin1I	GRCGYC	1 cut(s)	221
Hin1II	CATG	1 cut(s)	370
HinfI	GANTC	4 cut(s)	56, 349, 377, 429
HpaII	CCGG	1 cut(s)	283
Hpy166II	GTNNAC	1 cut(s)	262
Hpy188I	TCNGA	1 cut(s)	201
Hpy188III	TCNNGA	2 cut(s)	334, 426
Hpy8I	GTNNAC	1 cut(s)	262
HpyAV	CCTTC	1 cut(s)	117
HpyCH4V	TGCA	4 cut(s)	96, 104, 358, 370
HpyF10VI	GCNNNNNNNGC	1 cut(s)	235
Hsp92I	GRCGYC	1 cut(s)	221
Hsp92II	CATG	1 cut(s)	370
Kzo9I	GATC	2 cut(s)	6, 361
LmnI	GCTCC	1 cut(s)	140
LweI	GCATC	1 cut(s)	191
MaeI	CTAG	2 cut(s)	254, 433
MalI	GATC	2 cut(s)	8, 363
MboI	GATC	2 cut(s)	6, 361
MboII	GAAGA	4 cut(s)	51, 62, 80, 153
MflI	RGATCY	1 cut(s)	361
MluCI	AATT	5 cut(s)	64, 142, 202, 292, 400
MlyI	GAGTC	2 cut(s)	65, 423
MmeI	TCCRAC	1 cut(s)	231
MnlI	CCTC	6 cut(s)	23, 96, 148, 223, 319, 330
Mph1103I	ATGCAT	1 cut(s)	372
MslI	CAYNNNNRTG	1 cut(s)	51
MspI	CCGG	1 cut(s)	283
MspR9I	CCNGG	1 cut(s)	217
Mva1269I	GAATGC	2 cut(s)	96, 253
MvaI	CCWGG	1 cut(s)	217
MwoI	GCNNNNNNNGC	1 cut(s)	235
NdeII	GATC	2 cut(s)	6, 361
NlaIII	CATG	1 cut(s)	370
NmeAIII	GCCGAG	1 cut(s)	349
NsiI	ATGCAT	1 cut(s)	372
PctI	GAATGC	2 cut(s)	96, 253
PfeI	GAWTC	2 cut(s)	349, 377
PflFI	GACNNNGTC	1 cut(s)	193
PfoI	TCCNGGA	1 cut(s)	215
PinAI	ACCGGT	1 cut(s)	282
PleI	GAGTC	2 cut(s)	64, 423
PpsI	GAGTC	2 cut(s)	64, 423
Psp6I	CCWGG	1 cut(s)	215
PspFI	CCCAGC	1 cut(s)	131
PspGI	CCWGG	1 cut(s)	215
PspPI	GGNCC	2 cut(s)	280, 408
PsuI	RGATCY	1 cut(s)	361
PsyI	GACNNNGTC	1 cut(s)	193
RsaI	GTAC	1 cut(s)	263
RsaNI	GTAC	1 cut(s)	262
RseI	CAYNNNNRTG	1 cut(s)	51
Sau3AI	GATC	2 cut(s)	6, 361
Sau96I	GGNCC	2 cut(s)	280, 408
SchI	GAGTC	2 cut(s)	65, 423
ScrFI	CCNGG	1 cut(s)	217
SetI	ASST	5 cut(s)	88, 109, 137, 240, 259
SfaNI	GCATC	1 cut(s)	191
SinI	GGWCC	1 cut(s)	280
SmiMI	CAYNNNNRTG	1 cut(s)	51
SmlI	CTYRAG	1 cut(s)	424
SmoI	CTYRAG	1 cut(s)	424
Sse9I	AATT	5 cut(s)	64, 142, 202, 292, 400
SsiI	CCGC	1 cut(s)	33
SspMI	CTAG	2 cut(s)	254, 433
StyD4I	CCNGG	1 cut(s)	215
StyI	CCWWGG	1 cut(s)	300
TaqI	TCGA	2 cut(s)	9, 172
TasI	AATT	5 cut(s)	64, 142, 202, 292, 400
TfiI	GAWTC	2 cut(s)	349, 377
TscAI	CASTG	1 cut(s)	418
TspDTI	ATGAA	2 cut(s)	57, 145
TspRI	CASTG	1 cut(s)	418
Tth111I	GACNNNGTC	1 cut(s)	193
VpaK11BI	GGWCC	1 cut(s)	280
XapI	RAATTY	1 cut(s)	202
XspI	CTAG	2 cut(s)	254, 433
Zsp2I	ATGCAT	1 cut(s)	372

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.