Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0002291

Physical Location & Seq

Genomic Coordinates Forward (+)

34178731 .. 34181182

Gene Structure 2452 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G378000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 294 bp

ATGGCATCTCTCTCTTCCTCAAGGAACTCCTCCTGGACACCAAAGCAGAACAAATTATTTGAGAAGGCTCTGGCTGTGTATGACAAGGACACACAAGACCGCTGGCATAATGTGGCCAAGGCTGTGGGTGGAAAATCTGTAGAGGAAGTAAAGAGGCACTATGAGATTCTGGTGCAGGATCTCATGCATATAGAATCTGGCCAAGTCCCAATACCCAATTATAAGGGCACTGGAAGCAGCGGCAGCAGAGGAATTGGTGATGAGCAGAGGCTTATGAAAAACCTAAAGATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002791 GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0005783 GO:0005788 GO:0005789 GO:0005886 GO:0006355 GO:0006417 GO:0006457 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0010608 GO:0012505 GO:0016020 GO:0016021 GO:0019219 GO:0019222 GO:0031090 GO:0031224 GO:0031323 GO:0031326 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031984 GO:0032268 GO:0032879 GO:0032880 GO:0034248 GO:0042175 GO:0043021 GO:0043022 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0050708 GO:0050789 GO:0050794 GO:0051046 GO:0051049 GO:0051087 GO:0051171 GO:0051223 GO:0051246 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0070201 GO:0071944 GO:0080090 GO:0090087 GO:0098827 GO:0140110 GO:1903506 GO:1903530 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

98

Amino Acids

10.87

Weight (kDa)

9.48

Isoelectric Point (pI)

68.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002291)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19510 AT1G75250 AT1G75250
fragaria_vesca	FvH4_2g08980 FvH4_2g39660
malus_domestica	MD08G1030400.v1.1 MD10G1074400.v1.1 MD15G1025600.v1.1
prunus_persica	Prupe.1G378000_v2.0.a1 Prupe.8G095800_v2.0.a1
pyrus_communis	pycom10g05830 pycom15g02200
rosa_chinensis	RchiOBHm_Chr3g0458061 RchiOBHm_Chr6g0264661 RchiOBHm_Chr6g0301221
rosa_laevigata	RLG00000014237 RLG00000025176
rosa_multiflora	Rmu_co8206514.1_g000001 Rmu_co8336827.1_g000001 Rmu_sc0000384.1_g000016 Rmu_sc0000546.1_g000016 Rmu_sc0002592.1_g000001
rosa_roxburghii	Rroxscaffold_171G00441330 Rroxscaffold_175G00432000 Rroxscaffold_6G00421310 Rroxscaffold_7G00203220
rosa_rugosa	Rorug03G0024600 Rorug06G0015100 Rorug06G0302500
rosa_samantha	Rh3AG085300 Rh3BG088000 Rh3CG088600 Rh3DG088900 Rh6AG134100 Rh6AG415800 Rh6BG131600 Rh6CG130300 Rh6CG430300 Rh6DG117300
rosa_wichuraiana	Rw0G012440 Rw6G011610 Rw6G036010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	222
AciI	CCGC	2 cut(s)	100, 240
AclWI	GGATC	1 cut(s)	186
AcoI	YGGCCR	2 cut(s)	114, 199
AjnI	CCWGG	1 cut(s)	32
AlwI	GGATC	1 cut(s)	186
AoxI	GGCC	2 cut(s)	114, 199
ApeKI	GCWGC	2 cut(s)	237, 243
AsuHPI	GGTGA	1 cut(s)	269
BaeGI	GKGCMC	1 cut(s)	230
BalI	TGGCCA	2 cut(s)	116, 201
BbvI	GCAGC	2 cut(s)	249, 255
BciT130I	CCWGG	1 cut(s)	34
BfmI	CTRYAG	1 cut(s)	138
BglII	AGATCT	1 cut(s)	288
BisI	GCNGC	3 cut(s)	238, 241, 244
BlsI	GCNGC	3 cut(s)	239, 242, 245
Bme1390I	CCNGG	1 cut(s)	34
BmrFI	CCNGG	1 cut(s)	34
BmsI	GCATC	1 cut(s)	14
BpuEI	CTTGAG	1 cut(s)	4
BsaJI	CCNNGG	1 cut(s)	117
Bse1I	ACTGG	1 cut(s)	235
BseBI	CCWGG	1 cut(s)	34
BseDI	CCNNGG	1 cut(s)	117
BseNI	ACTGG	1 cut(s)	235
BseRI	GAGGAG	1 cut(s)	19
BseSI	GKGCMC	1 cut(s)	230
BseXI	GCAGC	2 cut(s)	249, 255
BsgI	GTGCAG	1 cut(s)	194
BshFI	GGCC	2 cut(s)	116, 201
BslFI	GGGAC	1 cut(s)	191
BsmFI	GGGAC	1 cut(s)	191
BsnI	GGCC	2 cut(s)	116, 201
Bsp1286I	GDGCHC	1 cut(s)	230
Bsp143I	GATC	2 cut(s)	178, 288
BspACI	CCGC	2 cut(s)	100, 240
BspANI	GGCC	2 cut(s)	116, 201
BspPI	GGATC	1 cut(s)	186
BsrI	ACTGG	1 cut(s)	235
BssECI	CCNNGG	1 cut(s)	117
BssMI	GATC	2 cut(s)	178, 288
BssT1I	CCWWGG	1 cut(s)	117
Bst2UI	CCWGG	1 cut(s)	34
Bst6I	CTCTTC	1 cut(s)	19
BstC8I	GCNNGC	1 cut(s)	104
BstKTI	GATC	2 cut(s)	181, 291
BstMBI	GATC	2 cut(s)	178, 288
BstMWI	GCNNNNNNNGC	2 cut(s)	234, 243
BstNI	CCWGG	1 cut(s)	34
BstSCI	CCNGG	1 cut(s)	32
BstSFI	CTRYAG	1 cut(s)	138
BstSLI	GKGCMC	1 cut(s)	230
BstV1I	GCAGC	2 cut(s)	249, 255
BstX2I	RGATCY	2 cut(s)	178, 288
BstXI	CCANNNNNNTGG	1 cut(s)	124
BstYI	RGATCY	2 cut(s)	178, 288
BsuRI	GGCC	2 cut(s)	116, 201
BtsIMutI	CAGTG	1 cut(s)	228
Cac8I	GCNNGC	1 cut(s)	104
CviAII	CATG	1 cut(s)	184
CviJI	RGCY	6 cut(s)	68, 74, 116, 122, 201, 271
CviKI_1	RGCY	6 cut(s)	68, 74, 116, 122, 201, 271
DpnI	GATC	2 cut(s)	180, 290
DpnII	GATC	2 cut(s)	178, 288
EaeI	YGGCCR	2 cut(s)	114, 199
Eam1104I	CTCTTC	1 cut(s)	19
EarI	CTCTTC	1 cut(s)	19
Eco130I	CCWWGG	1 cut(s)	117
EcoRII	CCWGG	1 cut(s)	32
EcoT14I	CCWWGG	1 cut(s)	117
EcoT22I	ATGCAT	1 cut(s)	189
ErhI	CCWWGG	1 cut(s)	117
FaeI	CATG	1 cut(s)	187
FaiI	YATR	8 cut(s)	81, 108, 162, 185, 189, 191, 222, 275
FaqI	GGGAC	1 cut(s)	191
FatI	CATG	1 cut(s)	183
Fnu4HI	GCNGC	3 cut(s)	238, 241, 244
Fsp4HI	GCNGC	3 cut(s)	238, 241, 244
GluI	GCNGC	3 cut(s)	238, 241, 244
HaeIII	GGCC	2 cut(s)	116, 201
Hin1II	CATG	1 cut(s)	187
HinfI	GANTC	2 cut(s)	166, 194
HphI	GGTGA	1 cut(s)	269
Hpy188I	TCNGA	1 cut(s)	293
HpyAV	CCTTC	1 cut(s)	58
HpyCH4V	TGCA	2 cut(s)	175, 187
HpyF10VI	GCNNNNNNNGC	2 cut(s)	234, 243
Hsp92II	CATG	1 cut(s)	187
Kzo9I	GATC	2 cut(s)	178, 288
LpnPI	CCDG	8 cut(s)	19, 46, 56, 88, 155, 161, 183, 216
Lsp1109I	GCAGC	2 cut(s)	249, 255
LweI	GCATC	1 cut(s)	14
MalI	GATC	2 cut(s)	180, 290
MboI	GATC	2 cut(s)	178, 288
MboII	GAAGA	1 cut(s)	6
MflI	RGATCY	2 cut(s)	178, 288
MhlI	GDGCHC	1 cut(s)	230
MlsI	TGGCCA	2 cut(s)	116, 201
MluCI	AATT	3 cut(s)	53, 217, 252
MluNI	TGGCCA	2 cut(s)	116, 201
MnlI	CCTC	6 cut(s)	28, 40, 136, 147, 242, 261
Mox20I	TGGCCA	2 cut(s)	116, 201
Mph1103I	ATGCAT	1 cut(s)	189
MscI	TGGCCA	2 cut(s)	116, 201
Msp20I	TGGCCA	2 cut(s)	116, 201
MspA1I	CMGCKG	2 cut(s)	102, 240
MspR9I	CCNGG	1 cut(s)	34
MvaI	CCWGG	1 cut(s)	34
MwoI	GCNNNNNNNGC	2 cut(s)	234, 243
NdeII	GATC	2 cut(s)	178, 288
NlaIII	CATG	1 cut(s)	187
NsiI	ATGCAT	1 cut(s)	189
PfeI	GAWTC	2 cut(s)	166, 194
PfoI	TCCNGGA	1 cut(s)	32
PkrI	GCNGC	3 cut(s)	239, 242, 245
PsiI	TTATAA	1 cut(s)	222
Psp6I	CCWGG	1 cut(s)	32
PspGI	CCWGG	1 cut(s)	32
PsuI	RGATCY	2 cut(s)	178, 288
SatI	GCNGC	3 cut(s)	238, 241, 244
Sau3AI	GATC	2 cut(s)	178, 288
ScrFI	CCNGG	1 cut(s)	34
SduI	GDGCHC	1 cut(s)	230
SetI	ASST	1 cut(s)	285
SfaNI	GCATC	1 cut(s)	14
SfcI	CTRYAG	1 cut(s)	138
SmlI	CTYRAG	1 cut(s)	19
SmoI	CTYRAG	1 cut(s)	19
Sse9I	AATT	3 cut(s)	53, 217, 252
SsiI	CCGC	2 cut(s)	100, 240
StyD4I	CCNGG	1 cut(s)	32
StyI	CCWWGG	1 cut(s)	117
TasI	AATT	3 cut(s)	53, 217, 252
TauI	GCSGC	1 cut(s)	243
TfiI	GAWTC	2 cut(s)	166, 194
TscAI	CASTG	1 cut(s)	235
TseI	GCWGC	2 cut(s)	237, 243
TspDTI	ATGAA	1 cut(s)	290
TspRI	CASTG	1 cut(s)	235
Zsp2I	ATGCAT	1 cut(s)	189

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.