Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0002291

Physical Location & Seq

Genomic Coordinates Reverse (-)

15706387 .. 15707435

Gene Structure 1049 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG130300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

ATGGCTTCAAGCTCTCTCAAAAAACATGACTCAAACAGCTGCTGGACACCAAAGCAGAACAAGTTGTTTGAGAGGGCTCTGGCCCTTTACGACAAGGATACCCCGGAACGGTGGCAAAATGTGGCCAAGGCTGTTGGCGGGAATAAAACAGCTGAGGAAGTGAAGAGACACTATGACATCCTACTTGAGGATCTCCGGCAAATTGAGTCCGGCCGGGTTCCTCTTCCCAACTACAAGTCCCTCGTAACCACCACTACAAATGTCGATGAGGAAGAAAGGCTTCTGAAGTATCTTAAGCTGCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

101

Amino Acids

11.69

Weight (kDa)

8.69

Isoelectric Point (pI)

69.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	14 - 58	4.2e-07	Myb-like DNA-binding domain
Myb_DNA-binding_2	PF23082	15 - 58	1.4e-08	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002291)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19510 AT1G75250 AT1G75250
fragaria_vesca	FvH4_2g08980 FvH4_2g39660
malus_domestica	MD08G1030400.v1.1 MD10G1074400.v1.1 MD15G1025600.v1.1
prunus_persica	Prupe.1G378000_v2.0.a1 Prupe.8G095800_v2.0.a1
pyrus_communis	pycom10g05830 pycom15g02200
rosa_chinensis	RchiOBHm_Chr3g0458061 RchiOBHm_Chr6g0264661 RchiOBHm_Chr6g0301221
rosa_laevigata	RLG00000014237 RLG00000025176
rosa_multiflora	Rmu_co8206514.1_g000001 Rmu_co8336827.1_g000001 Rmu_sc0000384.1_g000016 Rmu_sc0000546.1_g000016 Rmu_sc0002592.1_g000001
rosa_roxburghii	Rroxscaffold_171G00441330 Rroxscaffold_175G00432000 Rroxscaffold_6G00421310 Rroxscaffold_7G00203220
rosa_rugosa	Rorug03G0024600 Rorug06G0015100 Rorug06G0302500
rosa_samantha	Rh3AG085300 Rh3BG088000 Rh3CG088600 Rh3DG088900 Rh6AG134100 Rh6AG415800 Rh6BG131600 Rh6CG130300 Rh6CG430300 Rh6DG117300
rosa_wichuraiana	Rw0G012440 Rw6G011610 Rw6G036010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	138
AclWI	GGATC	1 cut(s)	198
AcoI	YGGCCR	2 cut(s)	123, 211
AcuI	CTGAAG	1 cut(s)	305
AfiI	CCNNNNNNNGG	2 cut(s)	108, 187
AflII	CTTAAG	1 cut(s)	293
AgsI	TTSAA	1 cut(s)	9
AluBI	AGCT	4 cut(s)	12, 39, 152, 298
AluI	AGCT	4 cut(s)	12, 39, 152, 298
Alw26I	GTCTC	1 cut(s)	160
AlwI	GGATC	1 cut(s)	198
AlwNI	CAGNNNCTG	1 cut(s)	42
AoxI	GGCC	3 cut(s)	81, 123, 211
ApeKI	GCWGC	2 cut(s)	39, 298
Asp700I	GAANNNNTTC	1 cut(s)	279
AspS9I	GGNCC	1 cut(s)	82
AsuC2I	CCSGG	2 cut(s)	104, 215
BalI	TGGCCA	1 cut(s)	125
BanII	GRGCYC	1 cut(s)	79
BbvCI	CCTCAGC	1 cut(s)	153
BbvI	GCAGC	2 cut(s)	26, 285
BciVI	GTATCC	1 cut(s)	91
BcnI	CCSGG	2 cut(s)	104, 215
BcoDI	GTCTC	1 cut(s)	160
BfmI	CTRYAG	1 cut(s)	299
BfrI	CTTAAG	1 cut(s)	293
BfuI	GTATCC	1 cut(s)	91
BisI	GCNGC	2 cut(s)	40, 299
BlsI	GCNGC	2 cut(s)	41, 300
Bme1390I	CCNGG	2 cut(s)	104, 215
BmgT120I	GGNCC	1 cut(s)	82
BmiI	GGNNCC	1 cut(s)	219
BmrFI	CCNGG	2 cut(s)	104, 215
Bpu10I	CCTNAGC	1 cut(s)	153
BpuEI	CTTGAG	1 cut(s)	206
BpuMI	CCSGG	2 cut(s)	104, 215
BsaJI	CCNNGG	2 cut(s)	102, 126
Bsc4I	CCNNNNNNNGG	2 cut(s)	108, 187
BseDI	CCNNGG	2 cut(s)	102, 126
BseGI	GGATG	1 cut(s)	177
BseLI	CCNNNNNNNGG	2 cut(s)	108, 187
BseMII	CTCAG	1 cut(s)	144
BseX3I	CGGCCG	1 cut(s)	211
BseXI	GCAGC	2 cut(s)	26, 285
Bsh1285I	CGRYCG	1 cut(s)	214
BshFI	GGCC	3 cut(s)	83, 125, 213
BsiEI	CGRYCG	1 cut(s)	214
BsiSI	CCGG	4 cut(s)	104, 196, 210, 214
BslFI	GGGAC	1 cut(s)	223
BslI	CCNNNNNNNGG	2 cut(s)	108, 187
BsmAI	GTCTC	1 cut(s)	160
BsmFI	GGGAC	1 cut(s)	223
BsnI	GGCC	3 cut(s)	83, 125, 213
Bsp1286I	GDGCHC	1 cut(s)	79
Bsp143I	GATC	1 cut(s)	190
BspACI	CCGC	1 cut(s)	138
BspANI	GGCC	3 cut(s)	83, 125, 213
BspCNI	CTCAG	1 cut(s)	145
BspLI	GGNNCC	1 cut(s)	219
BspMAI	CTGCAG	1 cut(s)	303
BspPI	GGATC	1 cut(s)	198
BspTI	CTTAAG	1 cut(s)	293
BssECI	CCNNGG	2 cut(s)	102, 126
BssMI	GATC	1 cut(s)	190
BssT1I	CCWWGG	1 cut(s)	126
Bst4CI	ACNGT	1 cut(s)	111
Bst6I	CTCTTC	2 cut(s)	158, 228
BstAFI	CTTAAG	1 cut(s)	293
BstDEI	CTNAG	1 cut(s)	153
BstENI	CCTNNNNNAGG	1 cut(s)	185
BstF5I	GGATG	1 cut(s)	177
BstKTI	GATC	1 cut(s)	193
BstMAI	GTCTC	1 cut(s)	160
BstMBI	GATC	1 cut(s)	190
BstMCI	CGRYCG	1 cut(s)	214
BstSCI	CCNGG	2 cut(s)	102, 213
BstSFI	CTRYAG	1 cut(s)	299
BstV1I	GCAGC	2 cut(s)	26, 285
BstX2I	RGATCY	1 cut(s)	190
BstYI	RGATCY	1 cut(s)	190
BstZI	CGGCCG	1 cut(s)	211
BsuI	GTATCC	1 cut(s)	91
BsuRI	GGCC	3 cut(s)	83, 125, 213
BtsCI	GGATG	1 cut(s)	177
CaiI	CAGNNNCTG	1 cut(s)	42
Cfr13I	GGNCC	1 cut(s)	82
CviAII	CATG	1 cut(s)	26
DdeI	CTNAG	1 cut(s)	153
DpnI	GATC	1 cut(s)	192
DpnII	GATC	1 cut(s)	190
EaeI	YGGCCR	2 cut(s)	123, 211
EagI	CGGCCG	1 cut(s)	211
Eam1104I	CTCTTC	2 cut(s)	158, 228
EarI	CTCTTC	2 cut(s)	158, 228
EclXI	CGGCCG	1 cut(s)	211
Eco130I	CCWWGG	1 cut(s)	126
Eco24I	GRGCYC	1 cut(s)	79
Eco52I	CGGCCG	1 cut(s)	211
Eco57I	CTGAAG	1 cut(s)	305
EcoNI	CCTNNNNNAGG	1 cut(s)	185
EcoT14I	CCWWGG	1 cut(s)	126
EcoT38I	GRGCYC	1 cut(s)	79
ErhI	CCWWGG	1 cut(s)	126
FaeI	CATG	1 cut(s)	29
FaiI	YATR	2 cut(s)	27, 174
FalI	AAGNNNNNCTT	2 cut(s)	264, 296
FaqI	GGGAC	1 cut(s)	223
FatI	CATG	1 cut(s)	25
FauI	CCCGC	1 cut(s)	131
Fnu4HI	GCNGC	2 cut(s)	40, 299
FokI	GGATG	1 cut(s)	164
FriOI	GRGCYC	1 cut(s)	79
Fsp4HI	GCNGC	2 cut(s)	40, 299
GluI	GCNGC	2 cut(s)	40, 299
HaeIII	GGCC	3 cut(s)	83, 125, 213
HapII	CCGG	4 cut(s)	104, 196, 210, 214
Hin1II	CATG	1 cut(s)	29
HinfI	GANTC	2 cut(s)	29, 206
HpaII	CCGG	4 cut(s)	104, 196, 210, 214
Hpy188I	TCNGA	1 cut(s)	285
HpyCH4III	ACNGT	1 cut(s)	111
HpyCH4V	TGCA	1 cut(s)	301
HpyF3I	CTNAG	1 cut(s)	153
Hsp92II	CATG	1 cut(s)	29
Kzo9I	GATC	1 cut(s)	190
LpnPI	CCDG	6 cut(s)	28, 65, 117, 209, 223, 227
Lsp1109I	GCAGC	2 cut(s)	26, 285
MaeIII	GTNAC	1 cut(s)	244
MalI	GATC	1 cut(s)	192
MboI	GATC	1 cut(s)	190
MboII	GAAGA	3 cut(s)	175, 215, 284
MflI	RGATCY	1 cut(s)	190
MhlI	GDGCHC	1 cut(s)	79
MlsI	TGGCCA	1 cut(s)	125
MluCI	AATT	1 cut(s)	201
MluNI	TGGCCA	1 cut(s)	125
MlyI	GAGTC	2 cut(s)	23, 215
MnlI	CCTC	6 cut(s)	66, 148, 181, 231, 251, 262
Mox20I	TGGCCA	1 cut(s)	125
MroXI	GAANNNNTTC	1 cut(s)	279
MscI	TGGCCA	1 cut(s)	125
MseI	TTAA	1 cut(s)	294
Msp20I	TGGCCA	1 cut(s)	125
MspA1I	CMGCKG	2 cut(s)	39, 152
MspCI	CTTAAG	1 cut(s)	293
MspI	CCGG	4 cut(s)	104, 196, 210, 214
MspR9I	CCNGG	2 cut(s)	104, 215
NciI	CCSGG	2 cut(s)	104, 215
NdeII	GATC	1 cut(s)	190
NlaIII	CATG	1 cut(s)	29
NlaIV	GGNNCC	1 cut(s)	219
PdmI	GAANNNNTTC	1 cut(s)	279
PkrI	GCNGC	2 cut(s)	41, 300
PleI	GAGTC	2 cut(s)	23, 214
PpsI	GAGTC	2 cut(s)	23, 214
PspN4I	GGNNCC	1 cut(s)	219
PspPI	GGNCC	1 cut(s)	82
PstI	CTGCAG	1 cut(s)	303
PstNI	CAGNNNCTG	1 cut(s)	42
PsuI	RGATCY	1 cut(s)	190
PvuII	CAGCTG	2 cut(s)	39, 152
SaqAI	TTAA	1 cut(s)	294
SatI	GCNGC	2 cut(s)	40, 299
Sau3AI	GATC	1 cut(s)	190
Sau96I	GGNCC	1 cut(s)	82
SchI	GAGTC	2 cut(s)	23, 215
ScrFI	CCNGG	2 cut(s)	104, 215
SduI	GDGCHC	1 cut(s)	79
SetI	ASST	4 cut(s)	14, 41, 154, 300
SfcI	CTRYAG	1 cut(s)	299
SmlI	CTYRAG	2 cut(s)	185, 293
SmoI	CTYRAG	2 cut(s)	185, 293
Sse9I	AATT	1 cut(s)	201
SsiI	CCGC	1 cut(s)	138
StyD4I	CCNGG	2 cut(s)	102, 213
StyI	CCWWGG	1 cut(s)	126
TaaI	ACNGT	1 cut(s)	111
TaqI	TCGA	1 cut(s)	264
TasI	AATT	1 cut(s)	201
Tru1I	TTAA	1 cut(s)	294
Tru9I	TTAA	1 cut(s)	294
TseI	GCWGC	2 cut(s)	39, 298
Vha464I	CTTAAG	1 cut(s)	293
XagI	CCTNNNNNAGG	1 cut(s)	185
XmnI	GAANNNNTTC	1 cut(s)	279

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.