Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002291

Physical Location & Seq

Genomic Coordinates Reverse (-)

28244317 .. 28245581

Gene Structure 1265 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G75250.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGGCGTCAAACTCAAGAAGTTCAATCTCACCATGGACGTTTAGTCAAAACAAGATGTTCGAGAGGGCCTTGGCAGTTTACGACAAGGACACACCCGACCGATGGCACAATGTGGCAAAAGCTGTCGGAGGGAAAACTGTAGAAGAAGTGAAGCGCCACTATGACATTCTCGTCGAGGATCTCATCAACATCGAGACTGGTCGTGTCCCTTTGCCCAATTACAAGACCTTCGAATCTAACTCAAGAAGCATCAATGACTTTGACACAAGGTATATAACTAAATATCTATATATGATGCTCTCGATATATTTTGATAATCATTCTAGTGATTTTGAGAAATTCTCTCAAAAAGTTCTTGTAAGTTATATTTCTTTGGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0002791 GO:0003006 GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0005783 GO:0005788 GO:0005789 GO:0005886 GO:0006355 GO:0006417 GO:0006457 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009639 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009987 GO:0010114 GO:0010154 GO:0010468 GO:0010556 GO:0010608 GO:0012505 GO:0016020 GO:0016021 GO:0019219 GO:0019222 GO:0022414 GO:0031090 GO:0031224 GO:0031323 GO:0031326 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031984 GO:0032268 GO:0032501 GO:0032502 GO:0032879 GO:0032880 GO:0034248 GO:0042175 GO:0043021 GO:0043022 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050708 GO:0050789 GO:0050794 GO:0050896 GO:0051046 GO:0051049 GO:0051087 GO:0051171 GO:0051223 GO:0051246 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0070201 GO:0071944 GO:0080090 GO:0090087 GO:0098827 GO:0140110 GO:1903506 GO:1903530 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

126

Amino Acids

14.75

Weight (kDa)

6.83

Isoelectric Point (pI)

69.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding_2	PF23082	11 - 54	9.6e-07	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002291)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19510 AT1G75250 AT1G75250
fragaria_vesca	FvH4_2g08980 FvH4_2g39660
malus_domestica	MD08G1030400.v1.1 MD10G1074400.v1.1 MD15G1025600.v1.1
prunus_persica	Prupe.1G378000_v2.0.a1 Prupe.8G095800_v2.0.a1
pyrus_communis	pycom10g05830 pycom15g02200
rosa_chinensis	RchiOBHm_Chr3g0458061 RchiOBHm_Chr6g0264661 RchiOBHm_Chr6g0301221
rosa_laevigata	RLG00000014237 RLG00000025176
rosa_multiflora	Rmu_co8206514.1_g000001 Rmu_co8336827.1_g000001 Rmu_sc0000384.1_g000016 Rmu_sc0000546.1_g000016 Rmu_sc0002592.1_g000001
rosa_roxburghii	Rroxscaffold_171G00441330 Rroxscaffold_175G00432000 Rroxscaffold_6G00421310 Rroxscaffold_7G00203220
rosa_rugosa	Rorug03G0024600 Rorug06G0015100 Rorug06G0302500
rosa_samantha	Rh3AG085300 Rh3BG088000 Rh3CG088600 Rh3DG088900 Rh6AG134100 Rh6AG415800 Rh6BG131600 Rh6CG130300 Rh6CG430300 Rh6DG117300
rosa_wichuraiana	Rw0G012440 Rw6G011610 Rw6G036010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	170
AclWI	GGATC	1 cut(s)	186
AcsI	RAATTY	1 cut(s)	338
AcyI	GRCGYC	1 cut(s)	5
AdeI	CACNNNGTG	1 cut(s)	112
AfiI	CCNNNNNNNGG	1 cut(s)	102
AgsI	TTSAA	1 cut(s)	24
AhdI	GACNNNNNGTC	1 cut(s)	42
AluBI	AGCT	1 cut(s)	122
AluI	AGCT	1 cut(s)	122
Alw26I	GTCTC	1 cut(s)	188
AlwI	GGATC	1 cut(s)	186
AoxI	GGCC	1 cut(s)	66
ApoI	RAATTY	1 cut(s)	338
AspLEI	GCGC	1 cut(s)	156
AspS9I	GGNCC	1 cut(s)	66
AsuHPI	GGTGA	1 cut(s)	21
AsuII	TTCGAA	1 cut(s)	231
BccI	CCATC	1 cut(s)	96
BcoDI	GTCTC	1 cut(s)	188
BfaI	CTAG	1 cut(s)	324
BfmI	CTRYAG	1 cut(s)	138
BfoI	RGCGCY	1 cut(s)	157
BmeRI	GACNNNNNGTC	1 cut(s)	42
BmgT120I	GGNCC	1 cut(s)	66
BmsI	GCATC	2 cut(s)	258, 285
BplI	GAGNNNNNCTC	2 cut(s)	326, 358
Bpu14I	TTCGAA	1 cut(s)	231
BpuEI	CTTGAG	1 cut(s)	226
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	2 cut(s)	32, 69
Bsc4I	CCNNNNNNNGG	1 cut(s)	102
Bse1I	ACTGG	1 cut(s)	202
BseDI	CCNNGG	2 cut(s)	32, 69
BseLI	CCNNNNNNNGG	1 cut(s)	102
BseNI	ACTGG	1 cut(s)	202
Bsh1285I	CGRYCG	1 cut(s)	100
BshFI	GGCC	1 cut(s)	68
BsiEI	CGRYCG	1 cut(s)	100
BslFI	GGGAC	1 cut(s)	191
BslI	CCNNNNNNNGG	1 cut(s)	102
BsmAI	GTCTC	1 cut(s)	188
BsmFI	GGGAC	1 cut(s)	191
BsnI	GGCC	1 cut(s)	68
Bsp119I	TTCGAA	1 cut(s)	231
Bsp143I	GATC	1 cut(s)	178
Bsp19I	CCATGG	1 cut(s)	32
BspANI	GGCC	1 cut(s)	68
BspPI	GGATC	1 cut(s)	186
BspT104I	TTCGAA	1 cut(s)	231
BsrI	ACTGG	1 cut(s)	202
BssECI	CCNNGG	2 cut(s)	32, 69
BssMI	GATC	1 cut(s)	178
BssNI	GRCGYC	1 cut(s)	5
BssT1I	CCWWGG	2 cut(s)	32, 69
Bst4CI	ACNGT	1 cut(s)	139
BstACI	GRCGYC	1 cut(s)	5
BstBI	TTCGAA	1 cut(s)	231
BstDSI	CCRYGG	1 cut(s)	32
BstH2I	RGCGCY	1 cut(s)	157
BstHHI	GCGC	1 cut(s)	156
BstKTI	GATC	1 cut(s)	181
BstMAI	GTCTC	1 cut(s)	188
BstMBI	GATC	1 cut(s)	178
BstMCI	CGRYCG	1 cut(s)	100
BstSFI	CTRYAG	1 cut(s)	138
BstX2I	RGATCY	1 cut(s)	178
BstYI	RGATCY	1 cut(s)	178
BsuRI	GGCC	1 cut(s)	68
BtgI	CCRYGG	1 cut(s)	32
CfoI	GCGC	1 cut(s)	156
Cfr13I	GGNCC	1 cut(s)	66
CviAII	CATG	1 cut(s)	33
CviJI	RGCY	2 cut(s)	68, 122
CviKI_1	RGCY	2 cut(s)	68, 122
DpnI	GATC	1 cut(s)	180
DpnII	GATC	1 cut(s)	178
DraIII	CACNNNGTG	1 cut(s)	112
DrdI	GACNNNNNNGTC	1 cut(s)	170
DriI	GACNNNNNGTC	1 cut(s)	42
DseDI	GACNNNNNNGTC	1 cut(s)	170
Eam1105I	GACNNNNNGTC	1 cut(s)	42
Eco130I	CCWWGG	2 cut(s)	32, 69
EcoO109I	RGGNCCY	1 cut(s)	66
EcoT14I	CCWWGG	2 cut(s)	32, 69
ErhI	CCWWGG	2 cut(s)	32, 69
FaeI	CATG	1 cut(s)	36
FaiI	YATR	9 cut(s)	34, 162, 273, 275, 289, 291, 293, 307, 366
FaqI	GGGAC	1 cut(s)	191
FatI	CATG	1 cut(s)	32
FspBI	CTAG	1 cut(s)	324
GlaI	GCGC	1 cut(s)	155
HaeII	RGCGCY	1 cut(s)	157
HaeIII	GGCC	1 cut(s)	68
HhaI	GCGC	1 cut(s)	156
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	1 cut(s)	36
Hin6I	GCGC	1 cut(s)	154
HinP1I	GCGC	1 cut(s)	154
HinfI	GANTC	1 cut(s)	233
HphI	GGTGA	1 cut(s)	21
Hpy166II	GTNNAC	1 cut(s)	79
Hpy188I	TCNGA	1 cut(s)	128
Hpy188III	TCNNGA	5 cut(s)	15, 61, 193, 243, 301
Hpy8I	GTNNAC	1 cut(s)	79
Hpy99I	CGWCG	1 cut(s)	176
HpyAV	CCTTC	1 cut(s)	238
HpyCH4III	ACNGT	1 cut(s)	139
HpyCH4IV	ACGT	1 cut(s)	38
HpySE526I	ACGT	1 cut(s)	38
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	1 cut(s)	36
HspAI	GCGC	1 cut(s)	154
Kzo9I	GATC	1 cut(s)	178
LpnPI	CCDG	1 cut(s)	183
LweI	GCATC	2 cut(s)	258, 285
MaeI	CTAG	1 cut(s)	324
MaeII	ACGT	1 cut(s)	38
MalI	GATC	1 cut(s)	180
MboI	GATC	1 cut(s)	178
MboII	GAAGA	1 cut(s)	155
MflI	RGATCY	1 cut(s)	178
MluCI	AATT	2 cut(s)	217, 338
MmeI	TCCRAC	1 cut(s)	106
MnlI	CCTC	3 cut(s)	57, 122, 169
MseI	TTAA	1 cut(s)	379
MslI	CAYNNNNRTG	1 cut(s)	324
NcoI	CCATGG	1 cut(s)	32
NdeII	GATC	1 cut(s)	178
NlaIII	CATG	1 cut(s)	36
NspV	TTCGAA	1 cut(s)	231
PfeI	GAWTC	1 cut(s)	233
PspPI	GGNCC	1 cut(s)	66
PsuI	RGATCY	1 cut(s)	178
RseI	CAYNNNNRTG	1 cut(s)	324
SaqAI	TTAA	1 cut(s)	379
Sau3AI	GATC	1 cut(s)	178
Sau96I	GGNCC	1 cut(s)	66
SetI	ASST	4 cut(s)	41, 124, 230, 272
SfaNI	GCATC	2 cut(s)	258, 285
SfcI	CTRYAG	1 cut(s)	138
SfuI	TTCGAA	1 cut(s)	231
SmiMI	CAYNNNNRTG	1 cut(s)	324
SmlI	CTYRAG	2 cut(s)	13, 241
SmoI	CTYRAG	2 cut(s)	13, 241
Sse9I	AATT	2 cut(s)	217, 338
SspMI	CTAG	1 cut(s)	324
StyI	CCWWGG	2 cut(s)	32, 69
TaaI	ACNGT	1 cut(s)	139
TaiI	ACGT	1 cut(s)	41
TaqI	TCGA	5 cut(s)	60, 174, 192, 231, 302
TaqII	GACCGA	1 cut(s)	114
TasI	AATT	2 cut(s)	217, 338
TfiI	GAWTC	1 cut(s)	233
Tru1I	TTAA	1 cut(s)	379
Tru9I	TTAA	1 cut(s)	379
XapI	RAATTY	1 cut(s)	338
XspI	CTAG	1 cut(s)	324

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.