Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0002291

Physical Location & Seq

Genomic Coordinates Reverse (-)

61085314 .. 61087159

Gene Structure 1846 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG415800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGGCATCCCTGAGTTCGTCGCGGAATTCCAACTCCTCCTGGACGCCGAAGCAGAACAAGCGGTTCGAGAAGGCCCTGGCTGTGTACGACAAGGACACGCAGGACCGGTGGCACAATGTGGCCAAGGCTGTGGGTGGAAAATCAGCTGAGGAAGTCAAGAGGCACTATGAGATTCTGGTGCAGGATCTCATGCATATAGAATCTGGTCAAGTCGCTATACCCAATTACAGGGCCACTGGAAGCAGCACTAGAGGAATTGCTGATTATGAACAGAGGTATCGAGCTTATGAAAAATCTGAAGATCTGATGAAGAAATGTAAAAACCATATGCAATATTGCCCTGTCATGCTGCCTATTAGTTTCTCCCTGCTTCCTACCAAGTACCAAGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002791 GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0005783 GO:0005788 GO:0005789 GO:0005886 GO:0006355 GO:0006417 GO:0006457 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0010608 GO:0012505 GO:0016020 GO:0016021 GO:0019219 GO:0019222 GO:0031090 GO:0031224 GO:0031323 GO:0031326 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031984 GO:0032268 GO:0032879 GO:0032880 GO:0034248 GO:0042175 GO:0043021 GO:0043022 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0050708 GO:0050789 GO:0050794 GO:0051046 GO:0051049 GO:0051087 GO:0051171 GO:0051223 GO:0051246 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0070201 GO:0071944 GO:0080090 GO:0090087 GO:0098827 GO:0140110 GO:1903506 GO:1903530 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

130

Amino Acids

14.96

Weight (kDa)

9.34

Isoelectric Point (pI)

58.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	13 - 56	1.8e-06	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002291)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19510 AT1G75250 AT1G75250
fragaria_vesca	FvH4_2g08980 FvH4_2g39660
malus_domestica	MD08G1030400.v1.1 MD10G1074400.v1.1 MD15G1025600.v1.1
prunus_persica	Prupe.1G378000_v2.0.a1 Prupe.8G095800_v2.0.a1
pyrus_communis	pycom10g05830 pycom15g02200
rosa_chinensis	RchiOBHm_Chr3g0458061 RchiOBHm_Chr6g0264661 RchiOBHm_Chr6g0301221
rosa_laevigata	RLG00000014237 RLG00000025176
rosa_multiflora	Rmu_co8206514.1_g000001 Rmu_co8336827.1_g000001 Rmu_sc0000384.1_g000016 Rmu_sc0000546.1_g000016 Rmu_sc0002592.1_g000001
rosa_roxburghii	Rroxscaffold_171G00441330 Rroxscaffold_175G00432000 Rroxscaffold_6G00421310 Rroxscaffold_7G00203220
rosa_rugosa	Rorug03G0024600 Rorug06G0015100 Rorug06G0302500
rosa_samantha	Rh3AG085300 Rh3BG088000 Rh3CG088600 Rh3DG088900 Rh6AG134100 Rh6AG415800 Rh6BG131600 Rh6CG130300 Rh6CG430300 Rh6DG117300
rosa_wichuraiana	Rw0G012440 Rw6G011610 Rw6G036010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	22
AciI	CCGC	2 cut(s)	22, 61
AclWI	GGATC	1 cut(s)	192
AcoI	YGGCCR	1 cut(s)	120
AcsI	RAATTY	1 cut(s)	25
AcuI	CTGAAG	1 cut(s)	318
AcyI	GRCGYC	1 cut(s)	44
AdeI	CACNNNGTG	1 cut(s)	118
AfaI	GTAC	2 cut(s)	86, 383
AfiI	CCNNNNNNNGG	1 cut(s)	228
AgeI	ACCGGT	1 cut(s)	105
AjnI	CCWGG	2 cut(s)	38, 75
AluBI	AGCT	2 cut(s)	146, 284
AluI	AGCT	2 cut(s)	146, 284
AlwI	GGATC	1 cut(s)	192
AoxI	GGCC	3 cut(s)	72, 120, 231
ApeKI	GCWGC	2 cut(s)	243, 349
ApoI	RAATTY	1 cut(s)	25
AsiGI	ACCGGT	1 cut(s)	105
AspS9I	GGNCC	3 cut(s)	73, 103, 231
AvaII	GGWCC	1 cut(s)	103
BaeI	ACNNNNGTAYC	2 cut(s)	260, 293
BalI	TGGCCA	1 cut(s)	122
BbvCI	CCTCAGC	1 cut(s)	147
BbvI	GCAGC	2 cut(s)	255, 336
BciT130I	CCWGG	2 cut(s)	40, 77
BfaI	CTAG	1 cut(s)	249
BglII	AGATCT	1 cut(s)	301
BisI	GCNGC	2 cut(s)	244, 350
BlsI	GCNGC	2 cut(s)	245, 351
Bme1390I	CCNGG	2 cut(s)	40, 77
Bme18I	GGWCC	1 cut(s)	103
BmgT120I	GGNCC	3 cut(s)	73, 103, 231
BmrFI	CCNGG	2 cut(s)	40, 77
BmsI	GCATC	1 cut(s)	14
Bpu10I	CCTNAGC	1 cut(s)	147
BsaHI	GRCGYC	1 cut(s)	44
BsaJI	CCNNGG	2 cut(s)	75, 123
BsaWI	WCCGGW	1 cut(s)	105
Bsc4I	CCNNNNNNNGG	1 cut(s)	228
Bse118I	RCCGGY	1 cut(s)	105
Bse1I	ACTGG	1 cut(s)	241
BseBI	CCWGG	2 cut(s)	40, 77
BseDI	CCNNGG	2 cut(s)	75, 123
BseGI	GGATG	1 cut(s)	5
BseLI	CCNNNNNNNGG	1 cut(s)	228
BseMII	CTCAG	1 cut(s)	138
BseNI	ACTGG	1 cut(s)	241
BseRI	GAGGAG	1 cut(s)	25
BseXI	GCAGC	2 cut(s)	255, 336
BsgI	GTGCAG	1 cut(s)	200
Bsh1236I	CGCG	1 cut(s)	22
BshFI	GGCC	3 cut(s)	74, 122, 233
BshTI	ACCGGT	1 cut(s)	105
BsiSI	CCGG	1 cut(s)	106
BslI	CCNNNNNNNGG	1 cut(s)	228
BsnI	GGCC	3 cut(s)	74, 122, 233
Bsp143I	GATC	2 cut(s)	184, 301
BspACI	CCGC	2 cut(s)	22, 61
BspANI	GGCC	3 cut(s)	74, 122, 233
BspCNI	CTCAG	1 cut(s)	139
BspFNI	CGCG	1 cut(s)	22
BspPI	GGATC	1 cut(s)	192
BsrFI	RCCGGY	1 cut(s)	105
BsrI	ACTGG	1 cut(s)	241
BssAI	RCCGGY	1 cut(s)	105
BssECI	CCNNGG	2 cut(s)	75, 123
BssMI	GATC	2 cut(s)	184, 301
BssNI	GRCGYC	1 cut(s)	44
BssT1I	CCWWGG	1 cut(s)	123
Bst2UI	CCWGG	2 cut(s)	40, 77
BstACI	GRCGYC	1 cut(s)	44
BstDEI	CTNAG	2 cut(s)	11, 147
BstF5I	GGATG	1 cut(s)	5
BstFNI	CGCG	1 cut(s)	22
BstKTI	GATC	2 cut(s)	187, 304
BstMBI	GATC	2 cut(s)	184, 301
BstMWI	GCNNNNNNNGC	1 cut(s)	58
BstNI	CCWGG	2 cut(s)	40, 77
BstSCI	CCNGG	2 cut(s)	38, 75
BstUI	CGCG	1 cut(s)	22
BstV1I	GCAGC	2 cut(s)	255, 336
BstX2I	RGATCY	2 cut(s)	184, 301
BstXI	CCANNNNNNTGG	1 cut(s)	130
BstYI	RGATCY	2 cut(s)	184, 301
BsuRI	GGCC	3 cut(s)	74, 122, 233
BtsCI	GGATG	1 cut(s)	5
BtsIMutI	CAGTG	1 cut(s)	234
Cfr10I	RCCGGY	1 cut(s)	105
Cfr13I	GGNCC	3 cut(s)	73, 103, 231
CseI	GACGC	1 cut(s)	52
Csp6I	GTAC	2 cut(s)	85, 382
CspAI	ACCGGT	1 cut(s)	105
CviAII	CATG	2 cut(s)	190, 346
CviJI	RGCY	7 cut(s)	74, 80, 122, 128, 146, 233, 284
CviKI_1	RGCY	7 cut(s)	74, 80, 122, 128, 146, 233, 284
CviQI	GTAC	2 cut(s)	85, 382
DdeI	CTNAG	2 cut(s)	11, 147
DpnI	GATC	2 cut(s)	186, 303
DpnII	GATC	2 cut(s)	184, 301
DraIII	CACNNNGTG	1 cut(s)	118
EaeI	YGGCCR	1 cut(s)	120
Eco130I	CCWWGG	1 cut(s)	123
Eco47I	GGWCC	1 cut(s)	103
Eco57I	CTGAAG	1 cut(s)	318
EcoO109I	RGGNCCY	1 cut(s)	73
EcoRI	GAATTC	1 cut(s)	25
EcoRII	CCWGG	2 cut(s)	38, 75
EcoT14I	CCWWGG	1 cut(s)	123
EcoT22I	ATGCAT	1 cut(s)	195
ErhI	CCWWGG	1 cut(s)	123
FaeI	CATG	2 cut(s)	193, 349
FatI	CATG	2 cut(s)	189, 345
FauNDI	CATATG	1 cut(s)	327
Fnu4HI	GCNGC	2 cut(s)	244, 350
Fsp4HI	GCNGC	2 cut(s)	244, 350
FspBI	CTAG	1 cut(s)	249
GluI	GCNGC	2 cut(s)	244, 350
HaeIII	GGCC	3 cut(s)	74, 122, 233
HapII	CCGG	1 cut(s)	106
HgaI	GACGC	1 cut(s)	52
Hin1I	GRCGYC	1 cut(s)	44
Hin1II	CATG	2 cut(s)	193, 349
HinfI	GANTC	2 cut(s)	172, 200
HpaII	CCGG	1 cut(s)	106
Hpy166II	GTNNAC	1 cut(s)	85
Hpy188I	TCNGA	2 cut(s)	298, 306
Hpy188III	TCNNGA	2 cut(s)	67, 157
Hpy8I	GTNNAC	1 cut(s)	85
Hpy99I	CGWCG	1 cut(s)	22
HpyAV	CCTTC	1 cut(s)	64
HpyCH4V	TGCA	3 cut(s)	181, 193, 331
HpyF10VI	GCNNNNNNNGC	1 cut(s)	58
HpyF3I	CTNAG	2 cut(s)	11, 147
Hsp92I	GRCGYC	1 cut(s)	44
Hsp92II	CATG	2 cut(s)	193, 349
Kzo9I	GATC	2 cut(s)	184, 301
Lsp1109I	GCAGC	2 cut(s)	255, 336
LweI	GCATC	1 cut(s)	14
MaeI	CTAG	1 cut(s)	249
MalI	GATC	2 cut(s)	186, 303
MboI	GATC	2 cut(s)	184, 301
MboII	GAAGA	2 cut(s)	311, 322
MflI	RGATCY	2 cut(s)	184, 301
MlsI	TGGCCA	1 cut(s)	122
MluCI	AATT	3 cut(s)	25, 223, 255
MluNI	TGGCCA	1 cut(s)	122
MmeI	TCCRAC	1 cut(s)	54
MnlI	CCTC	5 cut(s)	46, 142, 153, 245, 267
Mox20I	TGGCCA	1 cut(s)	122
Mph1103I	ATGCAT	1 cut(s)	195
MscI	TGGCCA	1 cut(s)	122
Msp20I	TGGCCA	1 cut(s)	122
MspA1I	CMGCKG	1 cut(s)	146
MspI	CCGG	1 cut(s)	106
MspR9I	CCNGG	2 cut(s)	40, 77
MvaI	CCWGG	2 cut(s)	40, 77
MvnI	CGCG	1 cut(s)	22
MwoI	GCNNNNNNNGC	1 cut(s)	58
NdeI	CATATG	1 cut(s)	327
NdeII	GATC	2 cut(s)	184, 301
NlaIII	CATG	2 cut(s)	193, 349
NsiI	ATGCAT	1 cut(s)	195
PfeI	GAWTC	2 cut(s)	172, 200
PfoI	TCCNGGA	1 cut(s)	38
PinAI	ACCGGT	1 cut(s)	105
PkrI	GCNGC	2 cut(s)	245, 351
Psp6I	CCWGG	2 cut(s)	38, 75
PspGI	CCWGG	2 cut(s)	38, 75
PspPI	GGNCC	3 cut(s)	73, 103, 231
PsuI	RGATCY	2 cut(s)	184, 301
PvuII	CAGCTG	1 cut(s)	146
RsaI	GTAC	2 cut(s)	86, 383
RsaNI	GTAC	2 cut(s)	85, 382
SatI	GCNGC	2 cut(s)	244, 350
Sau3AI	GATC	2 cut(s)	184, 301
Sau96I	GGNCC	3 cut(s)	73, 103, 231
ScrFI	CCNGG	2 cut(s)	40, 77
SetI	ASST	3 cut(s)	148, 278, 286
SfaNI	GCATC	1 cut(s)	14
SinI	GGWCC	1 cut(s)	103
Sse9I	AATT	3 cut(s)	25, 223, 255
SsiI	CCGC	2 cut(s)	22, 61
SspI	AATATT	1 cut(s)	335
SspMI	CTAG	1 cut(s)	249
StyD4I	CCNGG	2 cut(s)	38, 75
StyI	CCWWGG	1 cut(s)	123
TaqI	TCGA	2 cut(s)	66, 280
TasI	AATT	3 cut(s)	25, 223, 255
TfiI	GAWTC	2 cut(s)	172, 200
TscAI	CASTG	1 cut(s)	241
TseI	GCWGC	2 cut(s)	243, 349
TspDTI	ATGAA	3 cut(s)	282, 303, 323
TspRI	CASTG	1 cut(s)	241
VpaK11BI	GGWCC	1 cut(s)	103
XapI	RAATTY	1 cut(s)	25
XspI	CTAG	1 cut(s)	249
Zsp2I	ATGCAT	1 cut(s)	195

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.