Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0002291

Physical Location & Seq

Genomic Coordinates Forward (+)

12796854 .. 12797957

Gene Structure 1104 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G095800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 321 bp

ATGGCGTCCCTCCAAAAACACAACTCTTCCTGGACACCAAAACAGAACAAACTCTTTGAAAGAGCACTGGCCTTGTACGACAAGGATACCCCGGAACGGTGGCAAAATGTGGCCAAGGCTGTTGGTGGGAATAAAACAGTTGAGGAAGTCAAGAGGCACTATGACATCCTTCTAGAAGACCTCAGGCAAATCGAGTCCGGCCACGTTCCTATTCCCAACTACAAGTCCTCCTATGGCGGCAGTGCTGGTGGCCGCGGCAGCAGCAGCAACATTAATTTTGATGAAGAAGAAAGGCTTCTGAAGTATCTTAAATTGCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

107

Amino Acids

12.08

Weight (kDa)

8.86

Isoelectric Point (pI)

75.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002291)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19510 AT1G75250 AT1G75250
fragaria_vesca	FvH4_2g08980 FvH4_2g39660
malus_domestica	MD08G1030400.v1.1 MD10G1074400.v1.1 MD15G1025600.v1.1
prunus_persica	Prupe.1G378000_v2.0.a1 Prupe.8G095800_v2.0.a1
pyrus_communis	pycom10g05830 pycom15g02200
rosa_chinensis	RchiOBHm_Chr3g0458061 RchiOBHm_Chr6g0264661 RchiOBHm_Chr6g0301221
rosa_laevigata	RLG00000014237 RLG00000025176
rosa_multiflora	Rmu_co8206514.1_g000001 Rmu_co8336827.1_g000001 Rmu_sc0000384.1_g000016 Rmu_sc0000546.1_g000016 Rmu_sc0002592.1_g000001
rosa_roxburghii	Rroxscaffold_171G00441330 Rroxscaffold_175G00432000 Rroxscaffold_6G00421310 Rroxscaffold_7G00203220
rosa_rugosa	Rorug03G0024600 Rorug06G0015100 Rorug06G0302500
rosa_samantha	Rh3AG085300 Rh3BG088000 Rh3CG088600 Rh3DG088900 Rh6AG134100 Rh6AG415800 Rh6BG131600 Rh6CG130300 Rh6CG430300 Rh6DG117300
rosa_wichuraiana	Rw0G012440 Rw6G011610 Rw6G036010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	255
AciI	CCGC	3 cut(s)	237, 253, 255
AcoI	YGGCCR	3 cut(s)	111, 199, 250
AcuI	CTGAAG	1 cut(s)	320
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	1 cut(s)	77
AfiI	CCNNNNNNNGG	1 cut(s)	96
AgsI	TTSAA	1 cut(s)	59
AjnI	CCWGG	1 cut(s)	29
Alw21I	GWGCWC	1 cut(s)	67
AoxI	GGCC	4 cut(s)	69, 111, 199, 250
ApeKI	GCWGC	3 cut(s)	258, 261, 264
AseI	ATTAAT	1 cut(s)	273
Asp700I	GAANNNNTTC	1 cut(s)	294
AsuC2I	CCSGG	1 cut(s)	92
AxyI	CCTNAGG	1 cut(s)	182
BalI	TGGCCA	1 cut(s)	113
BbsI	GAAGAC	1 cut(s)	183
Bbv12I	GWGCWC	1 cut(s)	67
BbvI	GCAGC	3 cut(s)	270, 273, 276
BciT130I	CCWGG	1 cut(s)	31
BciVI	GTATCC	1 cut(s)	79
BcnI	CCSGG	1 cut(s)	92
BfaI	CTAG	1 cut(s)	173
BfuI	GTATCC	1 cut(s)	79
BisI	GCNGC	6 cut(s)	238, 253, 256, 259, 262, 265
BlsI	GCNGC	6 cut(s)	239, 254, 257, 260, 263, 266
Bme1390I	CCNGG	2 cut(s)	31, 92
BmrFI	CCNGG	2 cut(s)	31, 92
BpiI	GAAGAC	1 cut(s)	183
BpuMI	CCSGG	1 cut(s)	92
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	3 cut(s)	90, 114, 253
BsaXI	ACNNNNNCTCC	2 cut(s)	212, 242
Bsc4I	CCNNNNNNNGG	1 cut(s)	96
Bse1I	ACTGG	1 cut(s)	72
Bse21I	CCTNAGG	1 cut(s)	182
BseBI	CCWGG	1 cut(s)	31
BseDI	CCNNGG	3 cut(s)	90, 114, 253
BseGI	GGATG	1 cut(s)	165
BseLI	CCNNNNNNNGG	1 cut(s)	96
BseMII	CTCAG	1 cut(s)	196
BseNI	ACTGG	1 cut(s)	72
BseXI	GCAGC	3 cut(s)	270, 273, 276
Bsh1236I	CGCG	1 cut(s)	255
BshFI	GGCC	4 cut(s)	71, 113, 201, 252
BsiHKAI	GWGCWC	1 cut(s)	67
BsiSI	CCGG	2 cut(s)	92, 198
BslI	CCNNNNNNNGG	1 cut(s)	96
BsnI	GGCC	4 cut(s)	71, 113, 201, 252
Bsp1286I	GDGCHC	1 cut(s)	67
BspACI	CCGC	3 cut(s)	237, 253, 255
BspANI	GGCC	4 cut(s)	71, 113, 201, 252
BspCNI	CTCAG	1 cut(s)	195
BspFNI	CGCG	1 cut(s)	255
BsrI	ACTGG	1 cut(s)	72
BssECI	CCNNGG	3 cut(s)	90, 114, 253
BssNI	GRCGYC	1 cut(s)	5
BssT1I	CCWWGG	1 cut(s)	114
Bst2UI	CCWGG	1 cut(s)	31
Bst4CI	ACNGT	2 cut(s)	99, 139
Bst6I	CTCTTC	1 cut(s)	31
BstACI	GRCGYC	1 cut(s)	5
BstDEI	CTNAG	1 cut(s)	182
BstDSI	CCRYGG	1 cut(s)	253
BstF5I	GGATG	1 cut(s)	165
BstFNI	CGCG	1 cut(s)	255
BstMWI	GCNNNNNNNGC	3 cut(s)	258, 261, 264
BstNI	CCWGG	1 cut(s)	31
BstSCI	CCNGG	2 cut(s)	29, 90
BstUI	CGCG	1 cut(s)	255
BstV1I	GCAGC	3 cut(s)	270, 273, 276
BstV2I	GAAGAC	1 cut(s)	183
Bsu36I	CCTNAGG	1 cut(s)	182
BsuI	GTATCC	1 cut(s)	79
BsuRI	GGCC	4 cut(s)	71, 113, 201, 252
BtgI	CCRYGG	1 cut(s)	253
BtsCI	GGATG	1 cut(s)	165
BtsI	GCAGTG	1 cut(s)	247
BtsIMutI	CAGTG	2 cut(s)	65, 247
Cfr42I	CCGCGG	1 cut(s)	256
Csp6I	GTAC	1 cut(s)	76
CviJI	RGCY	6 cut(s)	71, 113, 119, 201, 252, 295
CviKI_1	RGCY	6 cut(s)	71, 113, 119, 201, 252, 295
CviQI	GTAC	1 cut(s)	76
DdeI	CTNAG	1 cut(s)	182
EaeI	YGGCCR	3 cut(s)	111, 199, 250
Eam1104I	CTCTTC	1 cut(s)	31
EarI	CTCTTC	1 cut(s)	31
Eco130I	CCWWGG	1 cut(s)	114
Eco57I	CTGAAG	1 cut(s)	320
Eco81I	CCTNAGG	1 cut(s)	182
EcoRII	CCWGG	1 cut(s)	29
EcoT14I	CCWWGG	1 cut(s)	114
ErhI	CCWWGG	1 cut(s)	114
FaiI	YATR	2 cut(s)	162, 234
FalI	AAGNNNNNCTT	2 cut(s)	279, 311
Fnu4HI	GCNGC	6 cut(s)	238, 253, 256, 259, 262, 265
FokI	GGATG	1 cut(s)	152
Fsp4HI	GCNGC	6 cut(s)	238, 253, 256, 259, 262, 265
FspBI	CTAG	1 cut(s)	173
GluI	GCNGC	6 cut(s)	238, 253, 256, 259, 262, 265
HaeIII	GGCC	4 cut(s)	71, 113, 201, 252
HapII	CCGG	2 cut(s)	92, 198
Hin1I	GRCGYC	1 cut(s)	5
HinfI	GANTC	1 cut(s)	194
HpaII	CCGG	2 cut(s)	92, 198
Hpy188I	TCNGA	1 cut(s)	300
Hpy188III	TCNNGA	2 cut(s)	151, 173
HpyAV	CCTTC	1 cut(s)	179
HpyCH4III	ACNGT	2 cut(s)	99, 139
HpyCH4IV	ACGT	1 cut(s)	204
HpyCH4V	TGCA	1 cut(s)	316
HpyF10VI	GCNNNNNNNGC	3 cut(s)	258, 261, 264
HpyF3I	CTNAG	1 cut(s)	182
HpySE526I	ACGT	1 cut(s)	204
Hsp92I	GRCGYC	1 cut(s)	5
KspI	CCGCGG	1 cut(s)	256
LpnPI	CCDG	7 cut(s)	16, 43, 53, 105, 169, 211, 231
Lsp1109I	GCAGC	3 cut(s)	270, 273, 276
MaeI	CTAG	1 cut(s)	173
MaeII	ACGT	1 cut(s)	204
MboII	GAAGA	4 cut(s)	18, 188, 296, 299
MhlI	GDGCHC	1 cut(s)	67
MlsI	TGGCCA	1 cut(s)	113
MluCI	AATT	2 cut(s)	274, 311
MluNI	TGGCCA	1 cut(s)	113
MlyI	GAGTC	1 cut(s)	203
MnlI	CCTC	5 cut(s)	20, 136, 147, 191, 238
Mox20I	TGGCCA	1 cut(s)	113
MroXI	GAANNNNTTC	1 cut(s)	294
MscI	TGGCCA	1 cut(s)	113
MseI	TTAA	2 cut(s)	273, 309
Msp20I	TGGCCA	1 cut(s)	113
MspA1I	CMGCKG	1 cut(s)	255
MspI	CCGG	2 cut(s)	92, 198
MspR9I	CCNGG	2 cut(s)	31, 92
MvaI	CCWGG	1 cut(s)	31
MvnI	CGCG	1 cut(s)	255
MwoI	GCNNNNNNNGC	3 cut(s)	258, 261, 264
NciI	CCSGG	1 cut(s)	92
PdmI	GAANNNNTTC	1 cut(s)	294
PfoI	TCCNGGA	1 cut(s)	29
PkrI	GCNGC	6 cut(s)	239, 254, 257, 260, 263, 266
PleI	GAGTC	1 cut(s)	202
PpsI	GAGTC	1 cut(s)	202
PshBI	ATTAAT	1 cut(s)	273
Psp6I	CCWGG	1 cut(s)	29
PspGI	CCWGG	1 cut(s)	29
RsaI	GTAC	1 cut(s)	77
RsaNI	GTAC	1 cut(s)	76
SacII	CCGCGG	1 cut(s)	256
SaqAI	TTAA	2 cut(s)	273, 309
SatI	GCNGC	6 cut(s)	238, 253, 256, 259, 262, 265
SchI	GAGTC	1 cut(s)	203
ScrFI	CCNGG	2 cut(s)	31, 92
SduI	GDGCHC	1 cut(s)	67
SetI	ASST	2 cut(s)	183, 207
Sfr303I	CCGCGG	1 cut(s)	256
SgrBI	CCGCGG	1 cut(s)	256
Sse9I	AATT	2 cut(s)	274, 311
SsiI	CCGC	3 cut(s)	237, 253, 255
SspMI	CTAG	1 cut(s)	173
StyD4I	CCNGG	2 cut(s)	29, 90
StyI	CCWWGG	1 cut(s)	114
TaaI	ACNGT	2 cut(s)	99, 139
TaiI	ACGT	1 cut(s)	207
TaqI	TCGA	1 cut(s)	192
TasI	AATT	2 cut(s)	274, 311
TauI	GCSGC	3 cut(s)	240, 255, 258
Tru1I	TTAA	2 cut(s)	273, 309
Tru9I	TTAA	2 cut(s)	273, 309
TscAI	CASTG	2 cut(s)	72, 247
TseI	GCWGC	3 cut(s)	258, 261, 264
TspDTI	ATGAA	1 cut(s)	297
TspRI	CASTG	2 cut(s)	72, 247
VspI	ATTAAT	1 cut(s)	273
XbaI	TCTAGA	1 cut(s)	172
XmnI	GAANNNNTTC	1 cut(s)	294
XspI	CTAG	1 cut(s)	173

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.