AT1G20910

domain-containing protein

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Reverse (-)
7276943 .. 7281236
4294 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G20910.1

Sequence Viewer

Length: 1197 bp
ATGGTGGATACCGAAATGCAAGAGCAAGATGTGACTTTTGGTGCCCTTGTTGAGACAAAGTATTTAGAGGAAGAACCTTTGGAGCCAGAAAATGATCACAACCCTAGTGAAATCCCGCAGCCCCTTCTTCTTGGAGATGGTCAGGCTAATAATGGTCATGGCATGAATGGTGGTGCTGTTGGAGTTGTTGACCACTCTGAAAGGAAGACTCGTAGGGTGCAAATGTTGAGTCCTAAGACTGAAGGTGAGAATGCCAAAAAGAGGAAGACTTGGCTGCTGGATTCTGAGGCACAGGGAACTGATGAAGCAGGGACACCGGTAGAACAAGTGGCGTTTCTAAGAGAAGTGGAGGCCTTTTACAAAGAGAGTTTCCTGGAATTTAAACCTCCTAAGTTTTATGGACAGCCTTTAAACATTCTCAAGCTTTGGCGAGCAGTCGTGAACCTAGGTGGCTATGAAGTGGTCACCACAAATAAGCTGTGGCGGCAAGTTGGAGAATCCTTCAATCCTCCCAAGACATGCACAACAGTCTCCTACACATTCCGCAATTTCTATGAGAAGGCACTTTTGGAGTACGAAAAGTGTTTAAGGAATAATGGTGAGCTTAACCTTCCTGGTTCAACATTGATTCTGTCTTCCAGTGTCGAGAAAGAGCCAAGTAGCCATCAAGGTTCAGGGTCAGGCAGGGCACGAAGAGATTCTGCAGCTCGTGCTATGCAAGGTTGGCATGCGCAGCGCCTTGTTGGATCTGGAGAGGTTACTGCGCCTGCTGTTAAGGATAAGGGCTTAATTTCCACCCCAAAGCACAAGAAACTCAAAAGCATTGGGCTGCAAAAACACAAACAACAAACTAGCATGGACCATGTTGTTACAAATGAAGCTGACAAACAGTTGGCTGCTGAGGTTGTTGATGTTGGACCCGTTGCTGACTGGGTGAAGATAAATGTCAAAGAATCTAAGGATTCCTTCGAGATATTTGCCTTGGTACCTGGACTTCTTCGCAAAGAGGTTCGAATTCAATCAGATCCTGCGGGAAAGGTGGTTATAACAGGCCAGCCAGAGCAGCTTGACAATCCTTGGGGGATTACACCCTTCAAAAAGATTGTTGACTTATCAGCAAGAATTGATCCGCTTCACACATCCGCGGTCATGAGCATGCATGGACGGTTGTTCATACGAGTTCCGTTTGAGCAGTAA

Protein Analysis

398

Amino Acids

44.26

Weight (kDa)

6.4

Isoelectric Point (pI)

42.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ARID PF01388 109 - 193 7.3e-19 ARID/BRIGHT DNA binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1046
Acc16I TGCGCA 1 cut(s) 732
Acc65I GGTACC 1 cut(s) 985
AccB1I GGYRCC 2 cut(s) 41, 985
AccII CGCG 1 cut(s) 1145
AciI CCGC 7 cut(s) 116, 484, 544, 1031, 1130, 1143, 1145
AclWI GGATC 3 cut(s) 754, 1019, 1121
AcsI RAATTY 2 cut(s) 377, 1014
AcuI CTGAAG 1 cut(s) 261
AfaI GTAC 2 cut(s) 575, 987
AfiI CCNNNNNNNGG 1 cut(s) 261
AgeI ACCGGT 1 cut(s) 316
AgsI TTSAA 4 cut(s) 505, 621, 1019, 1096
AjnI CCWGG 3 cut(s) 372, 613, 988
AjuI GAANNNNNNNTTGG 2 cut(s) 551, 583
AluBI AGCT 6 cut(s) 424, 478, 604, 707, 881, 1066
AluI AGCT 6 cut(s) 424, 478, 604, 707, 881, 1066
Alw26I GTCTC 2 cut(s) 47, 535
AlwI GGATC 3 cut(s) 754, 1019, 1121
AlwNI CAGNNNCTG 1 cut(s) 1028
AoxI GGCC 2 cut(s) 351, 1051
ApeKI GCWGC 7 cut(s) 118, 274, 704, 733, 829, 896, 1063
ApoI RAATTY 2 cut(s) 377, 1014
ArsI GACNNNNNNTTYG 2 cut(s) 214, 246
AsiGI ACCGGT 1 cut(s) 316
Asp700I GAANNNNTTC 1 cut(s) 697
Asp718I GGTACC 1 cut(s) 985
AspA2I CCTAGG 1 cut(s) 445
AspLEI GCGC 3 cut(s) 733, 738, 766
AspS9I GGNCC 2 cut(s) 859, 917
AsuHPI GGTGA 4 cut(s) 257, 457, 611, 946
AsuII TTCGAA 1 cut(s) 1012
AvaII GGWCC 2 cut(s) 859, 917
AvrII CCTAGG 1 cut(s) 445
BaeGI GKGCMC 2 cut(s) 46, 691
BanI GGYRCC 2 cut(s) 41, 985
BarI GAAGNNNNNNTAC 2 cut(s) 978, 1010
BauI CACGAG 1 cut(s) 708
BbsI GAAGAC 3 cut(s) 212, 272, 627
BbvCI CCTCAGC 1 cut(s) 900
BbvI GCAGC 7 cut(s) 130, 261, 716, 745, 816, 883, 1075
BccI CCATC 2 cut(s) 131, 672
BcgI CGANNNNNNTGC 2 cut(s) 959, 993
BciT130I CCWGG 3 cut(s) 374, 615, 990
BclI TGATCA 1 cut(s) 94
BcoDI GTCTC 2 cut(s) 47, 535
BfaI CTAG 3 cut(s) 105, 446, 852
BfmI CTRYAG 1 cut(s) 702
BfoI RGCGCY 1 cut(s) 739
BisI GCNGC 8 cut(s) 119, 275, 485, 705, 734, 830, 897, 1064
BlnI CCTAGG 1 cut(s) 445
BlsI GCNGC 8 cut(s) 120, 276, 486, 706, 735, 831, 898, 1065
Bme1390I CCNGG 3 cut(s) 374, 615, 990
Bme18I GGWCC 2 cut(s) 859, 917
BmgT120I GGNCC 2 cut(s) 859, 917
BmiI GGNNCC 4 cut(s) 43, 84, 919, 987
BmrFI CCNGG 3 cut(s) 374, 615, 990
BmrI ACTGGG 1 cut(s) 940
BmuI ACTGGG 1 cut(s) 940
BpiI GAAGAC 3 cut(s) 212, 272, 627
BpmI CTGGAG 1 cut(s) 771
Bpu10I CCTNAGC 1 cut(s) 900
Bpu14I TTCGAA 1 cut(s) 1012
BpuEI CTTGAG 1 cut(s) 404
BsaJI CCNNGG 4 cut(s) 445, 981, 1076, 1143
BsaWI WCCGGW 1 cut(s) 316
Bsc4I CCNNNNNNNGG 1 cut(s) 261
Bse118I RCCGGY 1 cut(s) 316
Bse1I ACTGG 2 cut(s) 639, 935
BseBI CCWGG 3 cut(s) 374, 615, 990
BseDI CCNNGG 4 cut(s) 445, 981, 1076, 1143
BseGI GGATG 1 cut(s) 1139
BseLI CCNNNNNNNGG 1 cut(s) 261
BseMII CTCAG 2 cut(s) 276, 891
BseNI ACTGG 2 cut(s) 639, 935
BseSI GKGCMC 2 cut(s) 46, 691
BseXI GCAGC 7 cut(s) 130, 261, 716, 745, 816, 883, 1075
Bsh1236I CGCG 1 cut(s) 1145
BshFI GGCC 2 cut(s) 353, 1053
BshNI GGYRCC 2 cut(s) 41, 985
BshTI ACCGGT 1 cut(s) 316
BsiSI CCGG 1 cut(s) 317
BslFI GGGAC 1 cut(s) 325
BslI CCNNNNNNNGG 1 cut(s) 261
BsmAI GTCTC 2 cut(s) 47, 535
BsmFI GGGAC 1 cut(s) 325
BsmI GAATGC 1 cut(s) 256
BsnI GGCC 2 cut(s) 353, 1053
Bsp119I TTCGAA 1 cut(s) 1012
Bsp1286I GDGCHC 2 cut(s) 46, 691
Bsp143I GATC 4 cut(s) 94, 746, 1024, 1126
BspACI CCGC 7 cut(s) 116, 484, 544, 1031, 1130, 1143, 1145
BspANI GGCC 2 cut(s) 353, 1053
BspCNI CTCAG 2 cut(s) 277, 892
BspFNI CGCG 1 cut(s) 1145
BspHI TCATGA 1 cut(s) 1149
BspLI GGNNCC 4 cut(s) 43, 84, 919, 987
BspMAI CTGCAG 1 cut(s) 706
BspPI GGATC 3 cut(s) 754, 1019, 1121
BspT104I TTCGAA 1 cut(s) 1012
BspT107I GGYRCC 2 cut(s) 41, 985
BsrFI RCCGGY 1 cut(s) 316
BsrI ACTGG 2 cut(s) 639, 935
BssAI RCCGGY 1 cut(s) 316
BssECI CCNNGG 4 cut(s) 445, 981, 1076, 1143
BssMI GATC 4 cut(s) 94, 746, 1024, 1126
BssSI CACGAG 1 cut(s) 708
BssT1I CCWWGG 3 cut(s) 445, 981, 1076
Bst2BI CACGAG 1 cut(s) 708
Bst2UI CCWGG 3 cut(s) 374, 615, 990
Bst4CI ACNGT 3 cut(s) 529, 891, 1167
Bst6I CTCTTC 1 cut(s) 688
BstAPI GCANNNNNTGC 1 cut(s) 710
BstBI TTCGAA 1 cut(s) 1012
BstC8I GCNNGC 5 cut(s) 432, 729, 768, 1055, 1157
BstDEI CTNAG 6 cut(s) 234, 285, 338, 390, 900, 957
BstDSI CCRYGG 1 cut(s) 1143
BstEII GGTNACC 1 cut(s) 463
BstF5I GGATG 1 cut(s) 1139
BstFNI CGCG 1 cut(s) 1145
BstH2I RGCGCY 1 cut(s) 739
BstHHI GCGC 3 cut(s) 733, 738, 766
BstKTI GATC 4 cut(s) 97, 749, 1027, 1129
BstMAI GTCTC 2 cut(s) 47, 535
BstMBI GATC 4 cut(s) 94, 746, 1024, 1126
BstMWI GCNNNNNNNGC 5 cut(s) 484, 710, 724, 733, 1063
BstNI CCWGG 3 cut(s) 374, 615, 990
BstNSI RCATGY 3 cut(s) 522, 731, 1159
BstPI GGTNACC 1 cut(s) 463
BstSCI CCNGG 3 cut(s) 372, 613, 988
BstSFI CTRYAG 1 cut(s) 702
BstSLI GKGCMC 2 cut(s) 46, 691
BstUI CGCG 1 cut(s) 1145
BstV1I GCAGC 7 cut(s) 130, 261, 716, 745, 816, 883, 1075
BstV2I GAAGAC 3 cut(s) 212, 272, 627
BstX2I RGATCY 2 cut(s) 746, 1024
BstYI RGATCY 2 cut(s) 746, 1024
BsuRI GGCC 2 cut(s) 353, 1053
BtgI CCRYGG 1 cut(s) 1143
BtsCI GGATG 1 cut(s) 1139
BtsIMutI CAGTG 1 cut(s) 646
Cac8I GCNNGC 5 cut(s) 432, 729, 768, 1055, 1157
CaiI CAGNNNCTG 1 cut(s) 1028
CciI TCATGA 1 cut(s) 1149
CfoI GCGC 3 cut(s) 733, 738, 766
Cfr10I RCCGGY 1 cut(s) 316
Cfr13I GGNCC 2 cut(s) 859, 917
Cfr42I CCGCGG 1 cut(s) 1146
Csp6I GTAC 2 cut(s) 574, 986
CspAI ACCGGT 1 cut(s) 316
CviAII CATG 9 cut(s) 158, 163, 519, 728, 856, 863, 1150, 1156, 1160
CviQI GTAC 2 cut(s) 574, 986
DdeI CTNAG 6 cut(s) 234, 285, 338, 390, 900, 957
DpnI GATC 4 cut(s) 96, 748, 1026, 1128
DpnII GATC 4 cut(s) 94, 746, 1024, 1126
DraI TTTAAA 2 cut(s) 382, 411
Eam1104I CTCTTC 1 cut(s) 688
EarI CTCTTC 1 cut(s) 688
Eco130I CCWWGG 3 cut(s) 445, 981, 1076
Eco147I AGGCCT 1 cut(s) 353
Eco47I GGWCC 2 cut(s) 859, 917
Eco57I CTGAAG 1 cut(s) 261
Eco91I GGTNACC 1 cut(s) 463
EcoO65I GGTNACC 1 cut(s) 463
EcoRI GAATTC 1 cut(s) 1014
EcoRII CCWGG 3 cut(s) 372, 613, 988
EcoT14I CCWWGG 3 cut(s) 445, 981, 1076
EcoT22I ATGCAT 1 cut(s) 1161
ErhI CCWWGG 3 cut(s) 445, 981, 1076
FaeI CATG 9 cut(s) 161, 166, 522, 731, 859, 866, 1153, 1159, 1163
FalI AAGNNNNNCTT 2 cut(s) 950, 982
FaqI GGGAC 1 cut(s) 325
FatI CATG 9 cut(s) 157, 162, 518, 727, 855, 862, 1149, 1155, 1159
FauI CCCGC 2 cut(s) 123, 1024
FbaI TGATCA 1 cut(s) 94
Fnu4HI GCNGC 8 cut(s) 119, 275, 485, 705, 734, 830, 897, 1064
FokI GGATG 1 cut(s) 1126
Fsp4HI GCNGC 8 cut(s) 119, 275, 485, 705, 734, 830, 897, 1064
FspBI CTAG 3 cut(s) 105, 446, 852
FspI TGCGCA 1 cut(s) 732
GlaI GCGC 3 cut(s) 732, 737, 765
GluI GCNGC 8 cut(s) 119, 275, 485, 705, 734, 830, 897, 1064
GsuI CTGGAG 1 cut(s) 771
HaeII RGCGCY 1 cut(s) 739
HaeIII GGCC 2 cut(s) 353, 1053
HapII CCGG 1 cut(s) 317
HhaI GCGC 3 cut(s) 733, 738, 766
Hin1II CATG 9 cut(s) 161, 166, 522, 731, 859, 866, 1153, 1159, 1163
Hin6I GCGC 3 cut(s) 731, 736, 764
HinP1I GCGC 3 cut(s) 731, 736, 764
HincII GTYRAC 2 cut(s) 190, 1108
HindII GTYRAC 2 cut(s) 190, 1108
HindIII AAGCTT 1 cut(s) 422
HinfI GANTC 8 cut(s) 208, 229, 281, 497, 628, 698, 953, 962
HpaII CCGG 1 cut(s) 317
HphI GGTGA 4 cut(s) 257, 457, 611, 946
Hpy166II GTNNAC 3 cut(s) 190, 442, 1108
Hpy188I TCNGA 3 cut(s) 199, 286, 1024
Hpy188III TCNNGA 5 cut(s) 439, 646, 750, 970, 1150
Hpy8I GTNNAC 3 cut(s) 190, 442, 1108
HpyAV CCTTC 7 cut(s) 134, 236, 511, 553, 620, 976, 1102
HpyCH4III ACNGT 3 cut(s) 529, 891, 1167
HpyCH4V TGCA 7 cut(s) 19, 220, 522, 704, 718, 832, 1159
HpyF10VI GCNNNNNNNGC 5 cut(s) 484, 710, 724, 733, 1063
HpyF3I CTNAG 6 cut(s) 234, 285, 338, 390, 900, 957
Hsp92II CATG 9 cut(s) 161, 166, 522, 731, 859, 866, 1153, 1159, 1163
HspAI GCGC 3 cut(s) 731, 736, 764
KpnI GGTACC 1 cut(s) 989
Ksp22I TGATCA 1 cut(s) 94
KspI CCGCGG 1 cut(s) 1146
Kzo9I GATC 4 cut(s) 94, 746, 1024, 1126
LmnI GCTCC 1 cut(s) 82
Lsp1109I GCAGC 7 cut(s) 130, 261, 716, 745, 816, 883, 1075
MaeI CTAG 3 cut(s) 105, 446, 852
MaeIII GTNAC 4 cut(s) 31, 463, 757, 868
MalI GATC 4 cut(s) 96, 748, 1026, 1128
MboI GATC 4 cut(s) 94, 746, 1024, 1126
MboII GAAGA 8 cut(s) 83, 119, 217, 277, 627, 705, 949, 989
MflI RGATCY 2 cut(s) 746, 1024
MhlI GDGCHC 2 cut(s) 46, 691
MluCI AATT 5 cut(s) 377, 547, 789, 1014, 1122
MlyI GAGTC 2 cut(s) 202, 238
MmeI TCCRAC 4 cut(s) 160, 472, 724, 895
MnlI CCTC 9 cut(s) 61, 255, 280, 343, 396, 519, 748, 895, 1000
Mph1103I ATGCAT 1 cut(s) 1161
MroXI GAANNNNTTC 1 cut(s) 697
MseI TTAA 6 cut(s) 381, 410, 587, 606, 774, 788
MslI CAYNNNNRTG 1 cut(s) 1154
MspA1I CMGCKG 1 cut(s) 1145
MspI CCGG 1 cut(s) 317
MspR9I CCNGG 3 cut(s) 374, 615, 990
MteI GCGCNGCGC 1 cut(s) 734
Mva1269I GAATGC 1 cut(s) 256
MvaI CCWGG 3 cut(s) 374, 615, 990
MvnI CGCG 1 cut(s) 1145
MwoI GCNNNNNNNGC 5 cut(s) 484, 710, 724, 733, 1063
NdeII GATC 4 cut(s) 94, 746, 1024, 1126
NlaIII CATG 9 cut(s) 161, 166, 522, 731, 859, 866, 1153, 1159, 1163
NlaIV GGNNCC 4 cut(s) 43, 84, 919, 987
NmuCI GTSAC 2 cut(s) 31, 463
NsbI TGCGCA 1 cut(s) 732
NsiI ATGCAT 1 cut(s) 1161
NspI RCATGY 3 cut(s) 522, 731, 1159
NspV TTCGAA 1 cut(s) 1012
PaeI GCATGC 2 cut(s) 731, 1159
PagI TCATGA 1 cut(s) 1149
PceI AGGCCT 1 cut(s) 353
PctI GAATGC 1 cut(s) 256
PdmI GAANNNNTTC 1 cut(s) 697
PfeI GAWTC 6 cut(s) 281, 497, 628, 698, 953, 962
PfoI TCCNGGA 1 cut(s) 372
PinAI ACCGGT 1 cut(s) 316
PkrI GCNGC 8 cut(s) 120, 276, 486, 706, 735, 831, 898, 1065
PleI GAGTC 2 cut(s) 202, 237
PpsI GAGTC 2 cut(s) 202, 237
PsiI TTATAA 1 cut(s) 1046
Psp6I CCWGG 3 cut(s) 372, 613, 988
PspEI GGTNACC 1 cut(s) 463
PspGI CCWGG 3 cut(s) 372, 613, 988
PspN4I GGNNCC 4 cut(s) 43, 84, 919, 987
PspPI GGNCC 2 cut(s) 859, 917
PstI CTGCAG 1 cut(s) 706
PstNI CAGNNNCTG 1 cut(s) 1028
PsuI RGATCY 2 cut(s) 746, 1024
RsaI GTAC 2 cut(s) 575, 987
RsaNI GTAC 2 cut(s) 574, 986
RseI CAYNNNNRTG 1 cut(s) 1154
SacII CCGCGG 1 cut(s) 1146
SaqAI TTAA 6 cut(s) 381, 410, 587, 606, 774, 788
SatI GCNGC 8 cut(s) 119, 275, 485, 705, 734, 830, 897, 1064
Sau3AI GATC 4 cut(s) 94, 746, 1024, 1126
Sau96I GGNCC 2 cut(s) 859, 917
SchI GAGTC 2 cut(s) 202, 238
ScrFI CCNGG 3 cut(s) 374, 615, 990
SduI GDGCHC 2 cut(s) 46, 691
SfcI CTRYAG 1 cut(s) 702
Sfr303I CCGCGG 1 cut(s) 1146
SfuI TTCGAA 1 cut(s) 1012
SgrBI CCGCGG 1 cut(s) 1146
SinI GGWCC 2 cut(s) 859, 917
SmiMI CAYNNNNRTG 1 cut(s) 1154
SmlI CTYRAG 1 cut(s) 419
SmoI CTYRAG 1 cut(s) 419
SphI GCATGC 2 cut(s) 731, 1159
Sse9I AATT 5 cut(s) 377, 547, 789, 1014, 1122
SseBI AGGCCT 1 cut(s) 353
SsiI CCGC 7 cut(s) 116, 484, 544, 1031, 1130, 1143, 1145
SspMI CTAG 3 cut(s) 105, 446, 852
StuI AGGCCT 1 cut(s) 353
StyD4I CCNGG 3 cut(s) 372, 613, 988
StyI CCWWGG 3 cut(s) 445, 981, 1076
TaaI ACNGT 3 cut(s) 529, 891, 1167
TaqI TCGA 3 cut(s) 645, 969, 1012
TasI AATT 5 cut(s) 377, 547, 789, 1014, 1122
TauI GCSGC 1 cut(s) 487
TfiI GAWTC 6 cut(s) 281, 497, 628, 698, 953, 962
Tru1I TTAA 6 cut(s) 381, 410, 587, 606, 774, 788
Tru9I TTAA 6 cut(s) 381, 410, 587, 606, 774, 788
TscAI CASTG 1 cut(s) 646
TseFI GTSAC 2 cut(s) 31, 463
TseI GCWGC 7 cut(s) 118, 274, 704, 733, 829, 896, 1063
Tsp45I GTSAC 2 cut(s) 31, 463
TspDTI ATGAA 5 cut(s) 179, 318, 471, 891, 1162
TspGWI ACGGA 1 cut(s) 1173
TspRI CASTG 1 cut(s) 646
VpaK11BI GGWCC 2 cut(s) 859, 917
XapI RAATTY 2 cut(s) 377, 1014
XceI RCATGY 3 cut(s) 522, 731, 1159
XmaJI CCTAGG 1 cut(s) 445
XmnI GAANNNNTTC 1 cut(s) 697
XspI CTAG 3 cut(s) 105, 446, 852
Zsp2I ATGCAT 1 cut(s) 1161
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.