Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0001717

Physical Location & Seq

Genomic Coordinates Reverse (-)

34004604 .. 34014558

Gene Structure 9955 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG304900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

ATGGAGGGCAAGGAAAAACTGGGCAAAGATCCGCAGAATGGTTCTGATGCTAAGGAGGAACCTACTGGGCCCAAGGAGGAGCAGCCACCTCAAACAGAAAACGATGCCGACAGTAATCCAGGTGATGACCAAATTATGAGGGACGCATTTCAGGATCACATGGCTATTGATGAGCTAAAGGTTGGTGATGTTAAAGCTAATGATCCTCTGCTTACTGAGGTGCGCATAGGAAGAAAAGGCAATGGCAGTAGTGCCAGAGTCGCAAACAAGCTCAAACAAACTGTAGATAAACATGTGGGGGAGTTGAAGAGTTGGTTGTCTGATTCTGAGGGTGAGGAATCGGAGGATGGGACACCGTTGCAGCAAGCAGCTTTTATGAGGGAGCTGGAGAGTTTCTATAAGGAGAGGTCTTTGGAATTTAAGGCCCCTAAGTTTTATGGAGAACCACTAAATTGCCTCAAGTTATGGAGAGCTGTCGTTAGAGCTGGTGGTTACGATGTGGTGACTTCATCAAAGTTATGGCGGCAAGTAGGAGAGTCCTTTCATCCCCCCAAGACGTGCACAACAGTATCTTGGACGTTTCGCATCTTTTATGAGAAGGCACTTTTGGAATATGAAAAGCATAAGAGGCAAACTGGGGAGATTCAGACAGCCATTGGATCGCTCACTCAGTGTACAACTGCTGTGAAGGAGGCAAGTAGTCATCAAGCACCTGGATCAGGTAGGGCACGGAGGGATGCTGCAGCGCGTGCTATGCAGGGTTGGCATGCACAGCGTCTTGTTGGATATGGTGAGATTGCTGAGCCTATTGTTAAGGACAAGAACTTAAGTACTACGCCAAAGCGTGAAAAGAATCTTAAAAGCATTGGTATGTTCCCCTGTAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000977 GO:0000981 GO:0001012 GO:0001067 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0016143 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019748 GO:0019757 GO:0019760 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044281 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901135 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576 GO:1901657 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ARID HSP20

Protein Analysis

295

Amino Acids

32.88

Weight (kDa)

6.63

Isoelectric Point (pI)

38.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ARID	PF01388	122 - 206	7.3e-20	ARID/BRIGHT DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001717)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20910 AT1G20910 AT1G76510 AT1G76510 AT1G76510 AT1G76510
fragaria_vesca	FvH4_2g17130 FvH4_5g29710 FvH4_5g29710 FvH4_5g29710 FvH4_5g29710 FvH4_5g29710
malus_domestica	MD05G1144500.v1.1 MD06G1002900.v1.1 MD10G1143800.v1.1
prunus_persica	Prupe.5G004500_v2.0.a1 Prupe.5G004500_v2.0.a1 Prupe.5G004500_v2.0.a1 Prupe.8G182600_v2.0.a1 Prupe.8G182600_v2.0.a1
pyrus_communis	pycom05g13950 pycom06g00300 pycom10g12380 pycom16g26250
rosa_chinensis	RchiOBHm_Chr6g0281551 RchiOBHm_Chr7g0216981
rosa_laevigata	RLG00000002516 RLG00000012964
rosa_multiflora	Rmu_sc0000854.1_g000027 Rmu_sc0012649.1_g000002 Rmu_sc0021437.1_g000002
rosa_roxburghii	Rroxscaffold_3G00242670 Rroxscaffold_7G00187010
rosa_rugosa	Rorug06G0141500 Rorug06G0141600 Rorug06G0141600 Rorug07G0164700 Rorug07G0164700
rosa_samantha	Rh6AG254000 Rh6BG256900 Rh6CG256100 Rh6DG248100 Rh7AG304900 Rh7BG296400 Rh7CG324000 Rh7DG305000
rosa_wichuraiana	Rw6G022050 Rw7G025890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	224
AccII	CGCG	1 cut(s)	748
AciI	CCGC	2 cut(s)	32, 523
AclWI	GGATC	5 cut(s)	23, 162, 197, 667, 724
AcsI	RAATTY	1 cut(s)	416
AdeI	CACNNNGTG	1 cut(s)	672
AfaI	GTAC	2 cut(s)	676, 832
AfiI	CCNNNNNNNGG	2 cut(s)	38, 719
AflII	CTTAAG	1 cut(s)	826
AflIII	ACRYGT	1 cut(s)	292
AgsI	TTSAA	1 cut(s)	307
AjiI	CACGTC	1 cut(s)	558
AjnI	CCWGG	2 cut(s)	118, 712
AjuI	GAANNNNNNNTTGG	2 cut(s)	590, 622
AluBI	AGCT	7 cut(s)	175, 197, 271, 371, 385, 473, 485
AluI	AGCT	7 cut(s)	175, 197, 271, 371, 385, 473, 485
Alw21I	GWGCWC	1 cut(s)	563
Alw44I	GTGCAC	1 cut(s)	559
AlwI	GGATC	5 cut(s)	23, 162, 197, 667, 724
AoxI	GGCC	2 cut(s)	68, 423
ApaI	GGGCCC	1 cut(s)	72
ApaLI	GTGCAC	1 cut(s)	559
ApeKI	GCWGC	5 cut(s)	82, 361, 368, 740, 743
ApoI	RAATTY	1 cut(s)	416
AspLEI	GCGC	2 cut(s)	225, 748
AspS9I	GGNCC	3 cut(s)	68, 69, 424
AsuHPI	GGTGA	5 cut(s)	134, 197, 344, 514, 803
BaeGI	GKGCMC	3 cut(s)	72, 563, 730
BaeI	ACNNNNGTAYC	2 cut(s)	552, 585
BanII	GRGCYC	1 cut(s)	72
Bbv12I	GWGCWC	1 cut(s)	563
BbvI	GCAGC	5 cut(s)	94, 373, 380, 727, 755
BccI	CCATC	1 cut(s)	341
BciT130I	CCWGG	2 cut(s)	120, 714
BfmI	CTRYAG	2 cut(s)	282, 741
BfrI	CTTAAG	1 cut(s)	826
BisI	GCNGC	6 cut(s)	83, 362, 369, 524, 741, 744
BlpI	GCTNAGC	1 cut(s)	801
BlsI	GCNGC	6 cut(s)	84, 363, 370, 525, 742, 745
BmcAI	AGTACT	1 cut(s)	832
Bme1390I	CCNGG	2 cut(s)	120, 714
BmgBI	CACGTC	1 cut(s)	558
BmgT120I	GGNCC	3 cut(s)	68, 69, 424
BmiI	GGNNCC	3 cut(s)	60, 70, 426
BmrFI	CCNGG	2 cut(s)	120, 714
BmrI	ACTGGG	3 cut(s)	29, 75, 645
BmsI	GCATC	4 cut(s)	37, 94, 594, 727
BmuI	ACTGGG	3 cut(s)	29, 75, 645
BpmI	CTGGAG	1 cut(s)	407
Bpu10I	CCTNAGC	1 cut(s)	51
Bpu1102I	GCTNAGC	1 cut(s)	801
BpuEI	CTTGAG	1 cut(s)	443
BsaJI	CCNNGG	1 cut(s)	72
Bsc4I	CCNNNNNNNGG	2 cut(s)	38, 719
Bse1I	ACTGG	3 cut(s)	24, 70, 640
Bse3DI	GCAATG	1 cut(s)	247
BseBI	CCWGG	2 cut(s)	120, 714
BseDI	CCNNGG	1 cut(s)	72
BseGI	GGATG	3 cut(s)	352, 544, 742
BseLI	CCNNNNNNNGG	2 cut(s)	38, 719
BseMI	GCAATG	1 cut(s)	247
BseMII	CTCAG	4 cut(s)	207, 318, 683, 792
BseNI	ACTGG	3 cut(s)	24, 70, 640
BseRI	GAGGAG	1 cut(s)	92
BseSI	GKGCMC	3 cut(s)	72, 563, 730
BseXI	GCAGC	5 cut(s)	94, 373, 380, 727, 755
Bsh1236I	CGCG	1 cut(s)	748
BshFI	GGCC	2 cut(s)	70, 425
BsiHKAI	GWGCWC	1 cut(s)	563
BslFI	GGGAC	2 cut(s)	155, 364
BslI	CCNNNNNNNGG	2 cut(s)	38, 719
BsmFI	GGGAC	2 cut(s)	155, 364
BsnI	GGCC	2 cut(s)	70, 425
Bsp120I	GGGCCC	1 cut(s)	68
Bsp1286I	GDGCHC	3 cut(s)	72, 563, 730
Bsp1407I	TGTACA	1 cut(s)	674
Bsp143I	GATC	5 cut(s)	28, 154, 202, 659, 716
Bsp1720I	GCTNAGC	1 cut(s)	801
BspACI	CCGC	2 cut(s)	32, 523
BspANI	GGCC	2 cut(s)	70, 425
BspCNI	CTCAG	4 cut(s)	208, 319, 682, 793
BspFNI	CGCG	1 cut(s)	748
BspLI	GGNNCC	3 cut(s)	60, 70, 426
BspMAI	CTGCAG	1 cut(s)	745
BspPI	GGATC	5 cut(s)	23, 162, 197, 667, 724
BspTI	CTTAAG	1 cut(s)	826
BsrDI	GCAATG	1 cut(s)	247
BsrGI	TGTACA	1 cut(s)	674
BsrI	ACTGG	3 cut(s)	24, 70, 640
BssECI	CCNNGG	1 cut(s)	72
BssMI	GATC	5 cut(s)	28, 154, 202, 659, 716
BssT1I	CCWWGG	1 cut(s)	72
Bst2UI	CCWGG	2 cut(s)	120, 714
Bst4CI	ACNGT	4 cut(s)	113, 283, 357, 568
Bst6I	CTCTTC	1 cut(s)	302
BstAFI	CTTAAG	1 cut(s)	826
BstAPI	GCANNNNNTGC	1 cut(s)	749
BstAUI	TGTACA	1 cut(s)	674
BstC8I	GCNNGC	3 cut(s)	366, 750, 768
BstDEI	CTNAG	6 cut(s)	51, 216, 327, 429, 669, 801
BstENI	CCTNNNNNAGG	1 cut(s)	717
BstF5I	GGATG	3 cut(s)	352, 544, 742
BstFNI	CGCG	1 cut(s)	748
BstHHI	GCGC	2 cut(s)	225, 748
BstKTI	GATC	5 cut(s)	31, 157, 205, 662, 719
BstMBI	GATC	5 cut(s)	28, 154, 202, 659, 716
BstMWI	GCNNNNNNNGC	6 cut(s)	260, 628, 749, 754, 763, 772
BstNI	CCWGG	2 cut(s)	120, 714
BstNSI	RCATGY	2 cut(s)	296, 770
BstSCI	CCNGG	2 cut(s)	118, 712
BstSFI	CTRYAG	2 cut(s)	282, 741
BstSLI	GKGCMC	3 cut(s)	72, 563, 730
BstUI	CGCG	1 cut(s)	748
BstV1I	GCAGC	5 cut(s)	94, 373, 380, 727, 755
BstX2I	RGATCY	1 cut(s)	28
BstYI	RGATCY	1 cut(s)	28
BsuRI	GGCC	2 cut(s)	70, 425
BtrI	CACGTC	1 cut(s)	558
BtsCI	GGATG	3 cut(s)	352, 544, 742
BtsIMutI	CAGTG	1 cut(s)	677
Cac8I	GCNNGC	3 cut(s)	366, 750, 768
CfoI	GCGC	2 cut(s)	225, 748
Cfr13I	GGNCC	3 cut(s)	68, 69, 424
CseI	GACGC	2 cut(s)	152, 764
Csp6I	GTAC	2 cut(s)	675, 831
CviAII	CATG	3 cut(s)	160, 293, 767
CviQI	GTAC	2 cut(s)	675, 831
DdeI	CTNAG	6 cut(s)	51, 216, 327, 429, 669, 801
DpnI	GATC	5 cut(s)	30, 156, 204, 661, 718
DpnII	GATC	5 cut(s)	28, 154, 202, 659, 716
DraIII	CACNNNGTG	1 cut(s)	672
Eam1104I	CTCTTC	1 cut(s)	302
EarI	CTCTTC	1 cut(s)	302
Eco130I	CCWWGG	1 cut(s)	72
Eco24I	GRGCYC	1 cut(s)	72
EcoNI	CCTNNNNNAGG	1 cut(s)	717
EcoO109I	RGGNCCY	1 cut(s)	424
EcoRII	CCWGG	2 cut(s)	118, 712
EcoT14I	CCWWGG	1 cut(s)	72
EcoT38I	GRGCYC	1 cut(s)	72
ErhI	CCWWGG	1 cut(s)	72
FaeI	CATG	3 cut(s)	163, 296, 770
FaqI	GGGAC	2 cut(s)	155, 364
FatI	CATG	3 cut(s)	159, 292, 766
Fnu4HI	GCNGC	6 cut(s)	83, 362, 369, 524, 741, 744
FokI	GGATG	3 cut(s)	359, 531, 749
FriOI	GRGCYC	1 cut(s)	72
Fsp4HI	GCNGC	6 cut(s)	83, 362, 369, 524, 741, 744
FspAI	RTGCGCAY	1 cut(s)	224
FspI	TGCGCA	1 cut(s)	224
GlaI	GCGC	2 cut(s)	224, 747
GluI	GCNGC	6 cut(s)	83, 362, 369, 524, 741, 744
GsuI	CTGGAG	1 cut(s)	407
HaeIII	GGCC	2 cut(s)	70, 425
HgaI	GACGC	2 cut(s)	152, 764
HhaI	GCGC	2 cut(s)	225, 748
Hin1II	CATG	3 cut(s)	163, 296, 770
Hin6I	GCGC	2 cut(s)	223, 746
HinP1I	GCGC	2 cut(s)	223, 746
HinfI	GANTC	6 cut(s)	258, 323, 338, 536, 643, 853
HphI	GGTGA	5 cut(s)	134, 197, 344, 514, 803
Hpy166II	GTNNAC	2 cut(s)	561, 675
Hpy188I	TCNGA	5 cut(s)	46, 322, 328, 343, 648
Hpy188III	TCNNGA	1 cut(s)	152
Hpy8I	GTNNAC	2 cut(s)	561, 675
HpyAV	CCTTC	2 cut(s)	592, 682
HpyCH4III	ACNGT	4 cut(s)	113, 283, 357, 568
HpyCH4IV	ACGT	2 cut(s)	557, 578
HpyCH4V	TGCA	5 cut(s)	361, 561, 743, 757, 770
HpyF10VI	GCNNNNNNNGC	6 cut(s)	260, 628, 749, 754, 763, 772
HpyF3I	CTNAG	6 cut(s)	51, 216, 327, 429, 669, 801
HpySE526I	ACGT	2 cut(s)	557, 578
Hsp92II	CATG	3 cut(s)	163, 296, 770
HspAI	GCGC	2 cut(s)	223, 746
Kzo9I	GATC	5 cut(s)	28, 154, 202, 659, 716
LmnI	GCTCC	2 cut(s)	79, 382
Lsp1109I	GCAGC	5 cut(s)	94, 373, 380, 727, 755
LweI	GCATC	4 cut(s)	37, 94, 594, 727
MaeII	ACGT	2 cut(s)	557, 578
MaeIII	GTNAC	2 cut(s)	491, 502
MalI	GATC	5 cut(s)	30, 156, 204, 661, 718
MboI	GATC	5 cut(s)	28, 154, 202, 659, 716
MboII	GAAGA	2 cut(s)	243, 319
MflI	RGATCY	1 cut(s)	28
MhlI	GDGCHC	3 cut(s)	72, 563, 730
MluCI	AATT	4 cut(s)	132, 416, 451, 883
MlyI	GAGTC	2 cut(s)	267, 545
MmeI	TCCRAC	1 cut(s)	763
MseI	TTAA	6 cut(s)	192, 420, 813, 827, 858, 886
MslI	CAYNNNNRTG	1 cut(s)	869
MspCI	CTTAAG	1 cut(s)	826
MspR9I	CCNGG	2 cut(s)	120, 714
MvaI	CCWGG	2 cut(s)	120, 714
MvnI	CGCG	1 cut(s)	748
MwoI	GCNNNNNNNGC	6 cut(s)	260, 628, 749, 754, 763, 772
NdeII	GATC	5 cut(s)	28, 154, 202, 659, 716
NlaIII	CATG	3 cut(s)	163, 296, 770
NlaIV	GGNNCC	3 cut(s)	60, 70, 426
NmuCI	GTSAC	1 cut(s)	502
NsbI	TGCGCA	1 cut(s)	224
NspI	RCATGY	2 cut(s)	296, 770
PaeI	GCATGC	1 cut(s)	770
PciI	ACATGT	1 cut(s)	292
PfeI	GAWTC	4 cut(s)	323, 338, 643, 853
PkrI	GCNGC	6 cut(s)	84, 363, 370, 525, 742, 745
PleI	GAGTC	2 cut(s)	266, 544
PpsI	GAGTC	2 cut(s)	266, 544
PscI	ACATGT	1 cut(s)	292
Psp6I	CCWGG	2 cut(s)	118, 712
PspGI	CCWGG	2 cut(s)	118, 712
PspN4I	GGNNCC	3 cut(s)	60, 70, 426
PspOMI	GGGCCC	1 cut(s)	68
PspPI	GGNCC	3 cut(s)	68, 69, 424
PstI	CTGCAG	1 cut(s)	745
PsuI	RGATCY	1 cut(s)	28
RsaI	GTAC	2 cut(s)	676, 832
RsaNI	GTAC	2 cut(s)	675, 831
RseI	CAYNNNNRTG	1 cut(s)	869
SaqAI	TTAA	6 cut(s)	192, 420, 813, 827, 858, 886
SatI	GCNGC	6 cut(s)	83, 362, 369, 524, 741, 744
Sau3AI	GATC	5 cut(s)	28, 154, 202, 659, 716
Sau96I	GGNCC	3 cut(s)	68, 69, 424
ScaI	AGTACT	1 cut(s)	832
SchI	GAGTC	2 cut(s)	267, 545
ScrFI	CCNGG	2 cut(s)	120, 714
SduI	GDGCHC	3 cut(s)	72, 563, 730
SfaNI	GCATC	4 cut(s)	37, 94, 594, 727
SfcI	CTRYAG	2 cut(s)	282, 741
SmiMI	CAYNNNNRTG	1 cut(s)	869
SmlI	CTYRAG	2 cut(s)	458, 826
SmoI	CTYRAG	2 cut(s)	458, 826
SphI	GCATGC	1 cut(s)	770
Sse9I	AATT	4 cut(s)	132, 416, 451, 883
SsiI	CCGC	2 cut(s)	32, 523
StyD4I	CCNGG	2 cut(s)	118, 712
StyI	CCWWGG	1 cut(s)	72
TaaI	ACNGT	4 cut(s)	113, 283, 357, 568
TaiI	ACGT	2 cut(s)	560, 581
TasI	AATT	4 cut(s)	132, 416, 451, 883
TatI	WGTACW	2 cut(s)	674, 830
TauI	GCSGC	1 cut(s)	526
TfiI	GAWTC	4 cut(s)	323, 338, 643, 853
Tru1I	TTAA	6 cut(s)	192, 420, 813, 827, 858, 886
Tru9I	TTAA	6 cut(s)	192, 420, 813, 827, 858, 886
TscAI	CASTG	1 cut(s)	677
TseFI	GTSAC	1 cut(s)	502
TseI	GCWGC	5 cut(s)	82, 361, 368, 740, 743
Tsp45I	GTSAC	1 cut(s)	502
TspDTI	ATGAA	3 cut(s)	498, 533, 630
TspGWI	ACGGA	1 cut(s)	745
TspRI	CASTG	1 cut(s)	677
Vha464I	CTTAAG	1 cut(s)	826
VneI	GTGCAC	1 cut(s)	559
XagI	CCTNNNNNAGG	1 cut(s)	717
XapI	RAATTY	1 cut(s)	416
XceI	RCATGY	2 cut(s)	296, 770
ZrmI	AGTACT	1 cut(s)	832

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.