Prupe.5G004500_v2.0.a1

AT-rich interactive domain-containing protein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
Physical Location & Seq
Forward (+)
563895 .. 574742
10848 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G004500.2

Sequence Viewer

Length: 1200 bp
ATGGAGGACAAGGAAAAATTGGGCCAAGAGAAGGATCAACTTGGGCAGCCACCTCAACCGGAAACAAATGATCAAGTTATGAGGGATGCTATTCAGGACAAGCCGGCTACTCATGAGGGGAATGTTGGTGATGATGTTAAAGTCAATGAGGCTCTTCTTAGTGATGTGCCCATAGAAAACAAGGCTGCTGGCAGCAATGCCACTGTCAAAAATCAGCTCAAATCTGTAGATAAACATGTAGGGGTGGGGGAGTTGAAGAATGGGTCAAACGATACCGAGATGGCTGAGGCTGATGATACGGGGGATGGTACACCATCGCAGCAAGCAGCATTTATGAAGGAGGTGGAAAGTTTCTACAAGGAAAACACCTTGGAATTTAAGGCCCCTAAGTTTTATGGAGAGCCGCTGAATTGCCTCAAGTTATGGAGGGCTGTTACTAGATTGGGTGGCTACGATGTGGTGACTGCATCAAAGTTATGGCGGCAAGTAGGAGAGTCCTTCCACCCGCCCAAGACTTGCACAACAGTATCTTGGACATTCCGCATATTTTACGAGAAGGCACTTTTGGAGTATGAAAAGCATAAGAGGCAAACTGGTGAGCTTCGACTTCCTGTTGGACCTGTCACTCAGTCCATGACCGTTGAGAAGGAGGCAAGTGGTCATCAAACTCCTGGATCAGGCAGGGCACGAAGGGATGCTGCAGCTCGTGCCATGCAGGGTTGGCATGCACAGCGTCTTGTTGGATATGGTGAAGTTGCCGAGCCTATTATTAAGGACAAGAACTTAAGTTCTACCTCAAAGCGTGAAAAGAATCTTAAAAGCATTGGTTCGATTAAACACAGGGCACCAACTAACCTCGAGCATGCAACTGCAAATATTGAGGCAGATAAGCAGGTAGTCACGACTGTTGTTGATCTTGGACCTCCAGCTGATTGGGTGAAGATCAATGTACGAGAAACTAAAGATTGCTTTGAGGTATATGCTTTGGTACCTGGTCTTCTGCGTGAGGAGGTGCGAGTCCAATCAGATCCAGCTGGACGTCTGGTTATAACAGGCCAACCAGAGCAGGTTGACAATCCTTGGGGTATTACACCATTTAAAAAGGTTGTGAGCTTACCTGGCAAAATTGATCCACTTCAAACATCCGCTGTGGTTAGCCTACATGGCCGGTTATTCGTGCGTGTTCCTTTTGAACAGTGA

Protein Analysis

400

Amino Acids

44.14

Weight (kDa)

6.35

Isoelectric Point (pI)

31.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1049
AatII GACGTC 1 cut(s) 1042
Acc36I ACCTGC 2 cut(s) 883, 1057
Acc65I GGTACC 1 cut(s) 988
AccB1I GGYRCC 2 cut(s) 844, 988
AciI CCGC 5 cut(s) 404, 481, 506, 541, 1146
AclWI GGATC 4 cut(s) 42, 682, 1022, 1124
AcoI YGGCCR 1 cut(s) 1165
AcsI RAATTY 1 cut(s) 374
AcyI GRCGYC 1 cut(s) 1039
AfaI GTAC 3 cut(s) 310, 951, 990
AfiI CCNNNNNNNGG 2 cut(s) 31, 677
AflII CTTAAG 1 cut(s) 784
AflIII ACRYGT 1 cut(s) 235
AgsI TTSAA 3 cut(s) 256, 1139, 1193
AjnI CCWGG 3 cut(s) 670, 991, 1117
AjuI GAANNNNNNNTTGG 2 cut(s) 548, 580
AluBI AGCT 6 cut(s) 217, 601, 704, 929, 1034, 1113
AluI AGCT 6 cut(s) 217, 601, 704, 929, 1034, 1113
AlwI GGATC 4 cut(s) 42, 682, 1022, 1124
Ama87I CYCGRG 1 cut(s) 857
AoxI GGCC 4 cut(s) 22, 381, 1054, 1165
ApeKI GCWGC 7 cut(s) 46, 185, 192, 319, 326, 698, 701
ApoI RAATTY 1 cut(s) 374
Asp718I GGTACC 1 cut(s) 988
AspS9I GGNCC 4 cut(s) 22, 382, 617, 920
AsuHPI GGTGA 5 cut(s) 140, 472, 608, 761, 949
AvaI CYCGRG 1 cut(s) 857
AvaII GGWCC 2 cut(s) 617, 920
BaeGI GKGCMC 3 cut(s) 171, 688, 847
BaeI ACNNNNGTAYC 2 cut(s) 510, 543
BanI GGYRCC 2 cut(s) 844, 988
BarI GAAGNNNNNNTAC 2 cut(s) 981, 1013
BauI CACGAG 1 cut(s) 705
BbsI GAAGAC 1 cut(s) 989
BbvCI CCTCAGC 1 cut(s) 285
BbvI GCAGC 7 cut(s) 58, 172, 204, 331, 338, 685, 713
BccI CCATC 3 cut(s) 274, 299, 322
BciT130I CCWGG 3 cut(s) 672, 993, 1119
BclI TGATCA 1 cut(s) 70
BfaI CTAG 1 cut(s) 438
BfmI CTRYAG 2 cut(s) 225, 699
BfrI CTTAAG 1 cut(s) 784
BfuAI ACCTGC 2 cut(s) 883, 1057
BglI GCCNNNNNGGC 1 cut(s) 1164
BisI GCNGC 9 cut(s) 47, 186, 193, 320, 327, 404, 482, 699, 702
BlsI GCNGC 9 cut(s) 48, 187, 194, 321, 328, 405, 483, 700, 703
Bme1390I CCNGG 3 cut(s) 672, 993, 1119
Bme18I GGWCC 2 cut(s) 617, 920
BmeT110I CYCGRG 1 cut(s) 857
BmgT120I GGNCC 4 cut(s) 22, 382, 617, 920
BmiI GGNNCC 3 cut(s) 384, 846, 990
BmrFI CCNGG 3 cut(s) 672, 993, 1119
BmsI GCATC 3 cut(s) 76, 476, 685
BpiI GAAGAC 1 cut(s) 989
BpmI CTGGAG 1 cut(s) 909
Bpu10I CCTNAGC 1 cut(s) 285
BpuEI CTTGAG 1 cut(s) 401
BsaHI GRCGYC 1 cut(s) 1039
BsaJI CCNNGG 2 cut(s) 369, 1079
BsaWI WCCGGW 1 cut(s) 58
Bsc4I CCNNNNNNNGG 2 cut(s) 31, 677
Bse118I RCCGGY 2 cut(s) 103, 1167
Bse1I ACTGG 1 cut(s) 598
Bse3DI GCAATG 1 cut(s) 202
BseBI CCWGG 3 cut(s) 672, 993, 1119
BseDI CCNNGG 2 cut(s) 369, 1079
BseGI GGATG 4 cut(s) 91, 310, 700, 1142
BseLI CCNNNNNNNGG 2 cut(s) 31, 677
BseMI GCAATG 1 cut(s) 202
BseMII CTCAG 2 cut(s) 276, 641
BseNI ACTGG 1 cut(s) 598
BseRI GAGGAG 1 cut(s) 1022
BseSI GKGCMC 3 cut(s) 171, 688, 847
BseXI GCAGC 7 cut(s) 58, 172, 204, 331, 338, 685, 713
BshFI GGCC 4 cut(s) 24, 383, 1056, 1167
BshNI GGYRCC 2 cut(s) 844, 988
BsiHKCI CYCGRG 1 cut(s) 857
BsiSI CCGG 3 cut(s) 59, 104, 1168
BslI CCNNNNNNNGG 2 cut(s) 31, 677
BsnI GGCC 4 cut(s) 24, 383, 1056, 1167
BsoBI CYCGRG 1 cut(s) 857
Bsp1286I GDGCHC 3 cut(s) 171, 688, 847
Bsp143I GATC 7 cut(s) 34, 70, 674, 913, 942, 1027, 1129
BspACI CCGC 5 cut(s) 404, 481, 506, 541, 1146
BspANI GGCC 4 cut(s) 24, 383, 1056, 1167
BspCNI CTCAG 2 cut(s) 277, 640
BspHI TCATGA 1 cut(s) 112
BspLI GGNNCC 3 cut(s) 384, 846, 990
BspMAI CTGCAG 1 cut(s) 703
BspMI ACCTGC 2 cut(s) 883, 1057
BspPI GGATC 4 cut(s) 42, 682, 1022, 1124
BspQI GCTCTTC 1 cut(s) 159
BspT107I GGYRCC 2 cut(s) 844, 988
BspTI CTTAAG 1 cut(s) 784
BsrDI GCAATG 1 cut(s) 202
BsrFI RCCGGY 2 cut(s) 103, 1167
BsrI ACTGG 1 cut(s) 598
BssAI RCCGGY 2 cut(s) 103, 1167
BssECI CCNNGG 2 cut(s) 369, 1079
BssMI GATC 7 cut(s) 34, 70, 674, 913, 942, 1027, 1129
BssNI GRCGYC 1 cut(s) 1039
BssSI CACGAG 1 cut(s) 705
BssT1I CCWWGG 2 cut(s) 369, 1079
Bst2BI CACGAG 1 cut(s) 705
Bst2UI CCWGG 3 cut(s) 672, 993, 1119
Bst4CI ACNGT 5 cut(s) 205, 526, 640, 907, 1197
Bst6I CTCTTC 1 cut(s) 159
BstACI GRCGYC 1 cut(s) 1039
BstAFI CTTAAG 1 cut(s) 784
BstAPI GCANNNNNTGC 1 cut(s) 707
BstC8I GCNNGC 5 cut(s) 105, 190, 324, 726, 864
BstDEI CTNAG 4 cut(s) 158, 285, 387, 627
BstENI CCTNNNNNAGG 1 cut(s) 675
BstF5I GGATG 4 cut(s) 91, 310, 700, 1142
BstKTI GATC 7 cut(s) 37, 73, 677, 916, 945, 1030, 1132
BstMBI GATC 7 cut(s) 34, 70, 674, 913, 942, 1027, 1129
BstMWI GCNNNNNNNGC 6 cut(s) 586, 707, 721, 730, 1119, 1164
BstNI CCWGG 3 cut(s) 672, 993, 1119
BstNSI RCATGY 3 cut(s) 239, 728, 866
BstSCI CCNGG 3 cut(s) 670, 991, 1117
BstSFI CTRYAG 2 cut(s) 225, 699
BstSLI GKGCMC 3 cut(s) 171, 688, 847
BstV1I GCAGC 7 cut(s) 58, 172, 204, 331, 338, 685, 713
BstV2I GAAGAC 1 cut(s) 989
BstX2I RGATCY 1 cut(s) 1027
BstXI CCANNNNNNTGG 1 cut(s) 933
BstYI RGATCY 1 cut(s) 1027
BsuRI GGCC 4 cut(s) 24, 383, 1056, 1167
BtgZI GCGATG 1 cut(s) 300
BtsCI GGATG 4 cut(s) 91, 310, 700, 1142
BtsIMutI CAGTG 1 cut(s) 201
BveI ACCTGC 2 cut(s) 883, 1057
Cac8I GCNNGC 5 cut(s) 105, 190, 324, 726, 864
CciI TCATGA 1 cut(s) 112
Cfr10I RCCGGY 2 cut(s) 103, 1167
Cfr13I GGNCC 4 cut(s) 22, 382, 617, 920
CseI GACGC 1 cut(s) 722
CsiI ACCWGGT 1 cut(s) 991
Csp6I GTAC 3 cut(s) 309, 950, 989
CviAII CATG 7 cut(s) 113, 236, 634, 712, 725, 863, 1163
CviQI GTAC 3 cut(s) 309, 950, 989
DdeI CTNAG 4 cut(s) 158, 285, 387, 627
DpnI GATC 7 cut(s) 36, 72, 676, 915, 944, 1029, 1131
DpnII GATC 7 cut(s) 34, 70, 674, 913, 942, 1027, 1129
DraI TTTAAA 1 cut(s) 1099
EaeI YGGCCR 1 cut(s) 1165
Eam1104I CTCTTC 1 cut(s) 159
EarI CTCTTC 1 cut(s) 159
Eco130I CCWWGG 2 cut(s) 369, 1079
Eco47I GGWCC 2 cut(s) 617, 920
Eco88I CYCGRG 1 cut(s) 857
EcoNI CCTNNNNNAGG 1 cut(s) 675
EcoO109I RGGNCCY 1 cut(s) 382
EcoRII CCWGG 3 cut(s) 670, 991, 1117
EcoT14I CCWWGG 2 cut(s) 369, 1079
ErhI CCWWGG 2 cut(s) 369, 1079
FaeI CATG 7 cut(s) 116, 239, 637, 715, 728, 866, 1166
FatI CATG 7 cut(s) 112, 235, 633, 711, 724, 862, 1162
FauI CCCGC 1 cut(s) 513
FbaI TGATCA 1 cut(s) 70
Fnu4HI GCNGC 9 cut(s) 47, 186, 193, 320, 327, 404, 482, 699, 702
FokI GGATG 4 cut(s) 98, 317, 707, 1129
Fsp4HI GCNGC 9 cut(s) 47, 186, 193, 320, 327, 404, 482, 699, 702
FspBI CTAG 1 cut(s) 438
GluI GCNGC 9 cut(s) 47, 186, 193, 320, 327, 404, 482, 699, 702
GsuI CTGGAG 1 cut(s) 909
HaeIII GGCC 4 cut(s) 24, 383, 1056, 1167
HapII CCGG 3 cut(s) 59, 104, 1168
HgaI GACGC 1 cut(s) 722
Hin1I GRCGYC 1 cut(s) 1039
Hin1II CATG 7 cut(s) 116, 239, 637, 715, 728, 866, 1166
HincII GTYRAC 1 cut(s) 1072
HindII GTYRAC 1 cut(s) 1072
HinfI GANTC 3 cut(s) 494, 811, 1017
HpaII CCGG 3 cut(s) 59, 104, 1168
HphI GGTGA 5 cut(s) 140, 472, 608, 761, 949
Hpy166II GTNNAC 2 cut(s) 311, 1072
Hpy188I TCNGA 1 cut(s) 1027
Hpy188III TCNNGA 3 cut(s) 95, 113, 901
Hpy8I GTNNAC 2 cut(s) 311, 1072
HpyAV CCTTC 6 cut(s) 25, 331, 508, 550, 640, 684
HpyCH4III ACNGT 5 cut(s) 205, 526, 640, 907, 1197
HpyCH4IV ACGT 1 cut(s) 1039
HpyCH4V TGCA 7 cut(s) 467, 519, 701, 715, 728, 866, 872
HpyF10VI GCNNNNNNNGC 6 cut(s) 586, 707, 721, 730, 1119, 1164
HpyF3I CTNAG 4 cut(s) 158, 285, 387, 627
HpySE526I ACGT 1 cut(s) 1039
Hsp92I GRCGYC 1 cut(s) 1039
Hsp92II CATG 7 cut(s) 116, 239, 637, 715, 728, 866, 1166
KpnI GGTACC 1 cut(s) 992
KroI GCCGGC 1 cut(s) 103
KroNI GCCGGC 1 cut(s) 105
Ksp22I TGATCA 1 cut(s) 70
Kzo9I GATC 7 cut(s) 34, 70, 674, 913, 942, 1027, 1129
LguI GCTCTTC 1 cut(s) 159
Lsp1109I GCAGC 7 cut(s) 58, 172, 204, 331, 338, 685, 713
LweI GCATC 3 cut(s) 76, 476, 685
MabI ACCWGGT 1 cut(s) 991
MaeI CTAG 1 cut(s) 438
MaeII ACGT 1 cut(s) 1039
MaeIII GTNAC 4 cut(s) 433, 460, 622, 898
MalI GATC 7 cut(s) 36, 72, 676, 915, 944, 1029, 1131
MboI GATC 7 cut(s) 34, 70, 674, 913, 942, 1027, 1129
MboII GAAGA 4 cut(s) 146, 268, 952, 989
MflI RGATCY 1 cut(s) 1027
MhlI GDGCHC 3 cut(s) 171, 688, 847
MluCI AATT 4 cut(s) 17, 374, 409, 1125
MlyI GAGTC 2 cut(s) 503, 1026
MmeI TCCRAC 2 cut(s) 595, 721
MroNI GCCGGC 1 cut(s) 103
MseI TTAA 7 cut(s) 138, 378, 771, 785, 816, 834, 1098
MspA1I CMGCKG 4 cut(s) 406, 929, 1034, 1148
MspCI CTTAAG 1 cut(s) 784
MspI CCGG 3 cut(s) 59, 104, 1168
MspR9I CCNGG 3 cut(s) 672, 993, 1119
MvaI CCWGG 3 cut(s) 672, 993, 1119
MwoI GCNNNNNNNGC 6 cut(s) 586, 707, 721, 730, 1119, 1164
NaeI GCCGGC 1 cut(s) 105
NdeII GATC 7 cut(s) 34, 70, 674, 913, 942, 1027, 1129
NgoMIV GCCGGC 1 cut(s) 103
NlaIII CATG 7 cut(s) 116, 239, 637, 715, 728, 866, 1166
NlaIV GGNNCC 3 cut(s) 384, 846, 990
NmeAIII GCCGAG 1 cut(s) 784
NmuCI GTSAC 3 cut(s) 460, 622, 898
NspI RCATGY 3 cut(s) 239, 728, 866
PaeI GCATGC 2 cut(s) 728, 866
PaeR7I CTCGAG 1 cut(s) 857
PagI TCATGA 1 cut(s) 112
PciI ACATGT 1 cut(s) 235
PciSI GCTCTTC 1 cut(s) 159
PdiI GCCGGC 1 cut(s) 105
PfeI GAWTC 1 cut(s) 811
PfoI TCCNGGA 1 cut(s) 670
PkrI GCNGC 9 cut(s) 48, 187, 194, 321, 328, 405, 483, 700, 703
PleI GAGTC 2 cut(s) 502, 1025
PpsI GAGTC 2 cut(s) 502, 1025
PscI ACATGT 1 cut(s) 235
PsiI TTATAA 1 cut(s) 1049
Psp6I CCWGG 3 cut(s) 670, 991, 1117
PspGI CCWGG 3 cut(s) 670, 991, 1117
PspN4I GGNNCC 3 cut(s) 384, 846, 990
PspPI GGNCC 4 cut(s) 22, 382, 617, 920
PspXI VCTCGAGB 1 cut(s) 857
PstI CTGCAG 1 cut(s) 703
PsuI RGATCY 1 cut(s) 1027
PvuII CAGCTG 2 cut(s) 929, 1034
RsaI GTAC 3 cut(s) 310, 951, 990
RsaNI GTAC 3 cut(s) 309, 950, 989
SapI GCTCTTC 1 cut(s) 159
SaqAI TTAA 7 cut(s) 138, 378, 771, 785, 816, 834, 1098
SatI GCNGC 9 cut(s) 47, 186, 193, 320, 327, 404, 482, 699, 702
Sau3AI GATC 7 cut(s) 34, 70, 674, 913, 942, 1027, 1129
Sau96I GGNCC 4 cut(s) 22, 382, 617, 920
SchI GAGTC 2 cut(s) 503, 1026
ScrFI CCNGG 3 cut(s) 672, 993, 1119
SduI GDGCHC 3 cut(s) 171, 688, 847
SexAI ACCWGGT 1 cut(s) 991
SfaNI GCATC 3 cut(s) 76, 476, 685
SfcI CTRYAG 2 cut(s) 225, 699
Sfr274I CTCGAG 1 cut(s) 857
SinI GGWCC 2 cut(s) 617, 920
SlaI CTCGAG 1 cut(s) 857
SmlI CTYRAG 3 cut(s) 416, 784, 857
SmoI CTYRAG 3 cut(s) 416, 784, 857
SphI GCATGC 2 cut(s) 728, 866
Sse9I AATT 4 cut(s) 17, 374, 409, 1125
SsiI CCGC 5 cut(s) 404, 481, 506, 541, 1146
SspI AATATT 1 cut(s) 877
SspMI CTAG 1 cut(s) 438
StyD4I CCNGG 3 cut(s) 670, 991, 1117
StyI CCWWGG 2 cut(s) 369, 1079
TaaI ACNGT 5 cut(s) 205, 526, 640, 907, 1197
TaiI ACGT 1 cut(s) 1042
TaqI TCGA 3 cut(s) 604, 830, 858
TasI AATT 4 cut(s) 17, 374, 409, 1125
TauI GCSGC 2 cut(s) 406, 484
TfiI GAWTC 1 cut(s) 811
Tru1I TTAA 7 cut(s) 138, 378, 771, 785, 816, 834, 1098
Tru9I TTAA 7 cut(s) 138, 378, 771, 785, 816, 834, 1098
TscAI CASTG 1 cut(s) 208
TseFI GTSAC 3 cut(s) 460, 622, 898
TseI GCWGC 7 cut(s) 46, 185, 192, 319, 326, 698, 701
Tsp45I GTSAC 3 cut(s) 460, 622, 898
TspDTI ATGAA 2 cut(s) 350, 588
TspRI CASTG 1 cut(s) 208
Vha464I CTTAAG 1 cut(s) 784
VpaK11BI GGWCC 2 cut(s) 617, 920
XagI CCTNNNNNAGG 1 cut(s) 675
XapI RAATTY 1 cut(s) 374
XceI RCATGY 3 cut(s) 239, 728, 866
XhoI CTCGAG 1 cut(s) 857
XspI CTAG 1 cut(s) 438
ZraI GACGTC 1 cut(s) 1040
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.