pycom06g00300

AT-rich interactive domain-containing protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
Physical Location & Seq
Forward (+)
279345 .. 289244
9900 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g00300.8

Sequence Viewer

Length: 1227 bp
ATGGAGGACGAAGAAAAGTCACTCAGTGAATCGAATACCAAACAACACGCGTCCAAGGAGGATCAGACTGGGCAGCTACCTCAACCGGAAACCAACGATCAAGTTATGAGGGATGCTACTGAGGACAACCCGCCTACTCATGAGGCAAATGTTGCTGATGTTAAAGTCAATGAGGCTCTTCTTAGTGATGTGCCCATAGAACACAAGGACAATGCCAGCAATGCCAGTGACAGGAATCAGCTTAAAACTGTAGATGATAAACAAATGGGAGTGGGGGAGTTGAAGAATGGGTTGAACGATACTGAGATGGCTGAGGCTGAGGAATCTGGGGATGGGACACCATCACAGCAAGCAGCATTTATGAAGGAGGTGGAAAGTTTCTACAGGGAGAACACCTTGGAGTTTAAGGCCCCAAAGTTTTATGGAGAGCCGCTGAATTGCCTTAAGTTATGGAGAGCTGTTACTAGATTGGGTGGCTATGACGTGGTGACTGCATCAAAGTTATGGCGGCAAGTAGGAGAGTCCTTCCATCCCCCCAAGACGTGCACAACAGTATCTTGGACATTCCGCATATTTTATGAAAAGGCACTTTTGGAATATGAGAAGCATAAGAGGAAAATTGGTGAGCTTCGACTTCCTGTTGGACCTATCACTCAGTCTACAAGTGTTGAGAAGGAGGCAAGTGCTCATCAAGCTCCTGGATCATGCATGGCACGAAGGGATGCTGCAGCTCGTGCAATGCAGGGTTGGCATGCACAGCGTCTTGTTGGATATGGTGAGGTTGCCGAGCCTACTATTAAGGACAAGCACTTGAGTTCTACCCCAAAGCGTGAAAAGAATCTTAAAAGCATTGGTTCGGTTAAACACAGGACACCAACAAACCTGGAGCTTTCAACTGCAAATATTGAGGCAGATAAGCAGGTAGTCACAACTGTTGTTGATCTTGGACCTCCAGCTGATTGGGTGAAGATCAATGTACTAGAAACTAAAGATTGCTTTGAGGTATATGCTTTGGTTCCTGGTCTTCTGCGTGAGGAGGTCCGAGTTCAATCAGATCCAGCTGGACGTCTTGTTATAACAGGTCAACCAGAGCAGATTGACAATCCTTGGGGTATTACACCATTTAAGAAGGTTGTGAGCTTACCTGGAAAAATTGATCCCCTTCAAACATCTGCTGTAGTTAGCCTGCATGGGCGGTTATTCGTGCGTGTTCCTTTTGAACAGTGA

Protein Analysis

409

Amino Acids

45.39

Weight (kDa)

5.61

Isoelectric Point (pI)

38.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1076
AatII GACGTC 1 cut(s) 1069
Acc36I ACCTGC 1 cut(s) 910
AccI GTMKAC 1 cut(s) 659
AccII CGCG 1 cut(s) 50
AciI CCGC 5 cut(s) 131, 431, 508, 568, 1195
AclWI GGATC 4 cut(s) 69, 709, 1049, 1151
AcyI GRCGYC 1 cut(s) 1066
AdeI CACNNNGTG 1 cut(s) 26
AfaI GTAC 1 cut(s) 978
AfiI CCNNNNNNNGG 1 cut(s) 231
AflII CTTAAG 1 cut(s) 443
AflIII ACRYGT 1 cut(s) 48
AgsI TTSAA 6 cut(s) 283, 295, 894, 1049, 1166, 1220
AjiI CACGTC 2 cut(s) 484, 543
AjnI CCWGG 4 cut(s) 697, 882, 1018, 1144
Alw21I GWGCWC 2 cut(s) 548, 688
Alw44I GTGCAC 1 cut(s) 544
AlwI GGATC 4 cut(s) 69, 709, 1049, 1151
AoxI GGCC 1 cut(s) 408
ApaLI GTGCAC 1 cut(s) 544
ApeKI GCWGC 4 cut(s) 73, 353, 725, 728
AspS9I GGNCC 4 cut(s) 409, 644, 947, 1039
AsuHPI GGTGA 4 cut(s) 499, 635, 788, 976
AvaII GGWCC 3 cut(s) 644, 947, 1039
BaeGI GKGCMC 2 cut(s) 195, 548
BaeI ACNNNNGTAYC 2 cut(s) 537, 570
BauI CACGAG 1 cut(s) 732
BbsI GAAGAC 1 cut(s) 1016
Bbv12I GWGCWC 2 cut(s) 548, 688
BbvCI CCTCAGC 2 cut(s) 312, 318
BbvI GCAGC 4 cut(s) 85, 365, 712, 740
BccI CCATC 4 cut(s) 301, 326, 349, 537
BciT130I CCWGG 4 cut(s) 699, 884, 1020, 1146
BfaI CTAG 2 cut(s) 465, 980
BfmI CTRYAG 4 cut(s) 249, 382, 726, 1176
BfrI CTTAAG 1 cut(s) 443
BfuAI ACCTGC 1 cut(s) 910
BisI GCNGC 6 cut(s) 74, 354, 431, 509, 726, 729
BlsI GCNGC 6 cut(s) 75, 355, 432, 510, 727, 730
Bme1390I CCNGG 4 cut(s) 699, 884, 1020, 1146
Bme18I GGWCC 3 cut(s) 644, 947, 1039
BmgBI CACGTC 2 cut(s) 484, 543
BmgT120I GGNCC 4 cut(s) 409, 644, 947, 1039
BmiI GGNNCC 2 cut(s) 411, 1017
BmrFI CCNGG 4 cut(s) 699, 884, 1020, 1146
BmrI ACTGGG 1 cut(s) 78
BmsI GCATC 3 cut(s) 103, 503, 712
BmuI ACTGGG 1 cut(s) 78
BpiI GAAGAC 1 cut(s) 1016
BpmI CTGGAG 2 cut(s) 905, 936
Bpu10I CCTNAGC 2 cut(s) 312, 318
BpuEI CTTGAG 1 cut(s) 832
BsaHI GRCGYC 1 cut(s) 1066
BsaJI CCNNGG 3 cut(s) 54, 396, 1106
BsaWI WCCGGW 1 cut(s) 85
Bsc4I CCNNNNNNNGG 1 cut(s) 231
Bse1I ACTGG 2 cut(s) 73, 225
Bse3DI GCAATG 2 cut(s) 226, 744
BseBI CCWGG 4 cut(s) 699, 884, 1020, 1146
BseDI CCNNGG 3 cut(s) 54, 396, 1106
BseGI GGATG 4 cut(s) 118, 337, 529, 727
BseLI CCNNNNNNNGG 1 cut(s) 231
BseMI GCAATG 2 cut(s) 226, 744
BseMII CTCAG 6 cut(s) 37, 111, 294, 303, 309, 668
BseNI ACTGG 2 cut(s) 73, 225
BseRI GAGGAG 1 cut(s) 1049
BseSI GKGCMC 2 cut(s) 195, 548
BseXI GCAGC 4 cut(s) 85, 365, 712, 740
Bsh1236I CGCG 1 cut(s) 50
BshFI GGCC 1 cut(s) 410
BsiHKAI GWGCWC 2 cut(s) 548, 688
BsiSI CCGG 1 cut(s) 86
BslFI GGGAC 1 cut(s) 349
BslI CCNNNNNNNGG 1 cut(s) 231
BsmFI GGGAC 1 cut(s) 349
BsnI GGCC 1 cut(s) 410
Bsp1286I GDGCHC 3 cut(s) 195, 548, 688
Bsp143I GATC 7 cut(s) 61, 97, 701, 940, 969, 1054, 1156
BspACI CCGC 5 cut(s) 131, 431, 508, 568, 1195
BspANI GGCC 1 cut(s) 410
BspCNI CTCAG 6 cut(s) 36, 112, 295, 304, 310, 667
BspFNI CGCG 1 cut(s) 50
BspHI TCATGA 1 cut(s) 139
BspLI GGNNCC 2 cut(s) 411, 1017
BspMAI CTGCAG 1 cut(s) 730
BspMI ACCTGC 1 cut(s) 910
BspPI GGATC 4 cut(s) 69, 709, 1049, 1151
BspQI GCTCTTC 1 cut(s) 183
BspTI CTTAAG 1 cut(s) 443
BsrDI GCAATG 2 cut(s) 226, 744
BsrI ACTGG 2 cut(s) 73, 225
BssECI CCNNGG 3 cut(s) 54, 396, 1106
BssMI GATC 7 cut(s) 61, 97, 701, 940, 969, 1054, 1156
BssNI GRCGYC 1 cut(s) 1066
BssSI CACGAG 1 cut(s) 732
BssT1I CCWWGG 3 cut(s) 54, 396, 1106
Bst2BI CACGAG 1 cut(s) 732
Bst2UI CCWGG 4 cut(s) 699, 884, 1020, 1146
Bst4CI ACNGT 4 cut(s) 250, 553, 934, 1224
Bst6I CTCTTC 1 cut(s) 183
BstACI GRCGYC 1 cut(s) 1066
BstAFI CTTAAG 1 cut(s) 443
BstAPI GCANNNNNTGC 2 cut(s) 152, 734
BstC8I GCNNGC 4 cut(s) 217, 351, 753, 1187
BstDEI CTNAG 7 cut(s) 23, 120, 182, 303, 312, 318, 654
BstF5I GGATG 4 cut(s) 118, 337, 529, 727
BstFNI CGCG 1 cut(s) 50
BstKTI GATC 7 cut(s) 64, 100, 704, 943, 972, 1057, 1159
BstMBI GATC 7 cut(s) 61, 97, 701, 940, 969, 1054, 1156
BstMWI GCNNNNNNNGC 6 cut(s) 152, 221, 692, 734, 748, 757
BstNI CCWGG 4 cut(s) 699, 884, 1020, 1146
BstNSI RCATGY 1 cut(s) 755
BstSCI CCNGG 4 cut(s) 697, 882, 1018, 1144
BstSFI CTRYAG 4 cut(s) 249, 382, 726, 1176
BstSLI GKGCMC 2 cut(s) 195, 548
BstUI CGCG 1 cut(s) 50
BstV1I GCAGC 4 cut(s) 85, 365, 712, 740
BstV2I GAAGAC 1 cut(s) 1016
BstX2I RGATCY 1 cut(s) 1054
BstXI CCANNNNNNTGG 1 cut(s) 960
BstYI RGATCY 1 cut(s) 1054
BsuRI GGCC 1 cut(s) 410
BtrI CACGTC 2 cut(s) 484, 543
BtsCI GGATG 4 cut(s) 118, 337, 529, 727
BtsIMutI CAGTG 2 cut(s) 31, 232
BveI ACCTGC 1 cut(s) 910
Cac8I GCNNGC 4 cut(s) 217, 351, 753, 1187
CciI TCATGA 1 cut(s) 139
Cfr13I GGNCC 4 cut(s) 409, 644, 947, 1039
CseI GACGC 2 cut(s) 39, 749
Csp6I GTAC 1 cut(s) 977
CviAII CATG 5 cut(s) 140, 705, 709, 752, 1190
CviQI GTAC 1 cut(s) 977
DdeI CTNAG 7 cut(s) 23, 120, 182, 303, 312, 318, 654
DpnI GATC 7 cut(s) 63, 99, 703, 942, 971, 1056, 1158
DpnII GATC 7 cut(s) 61, 97, 701, 940, 969, 1054, 1156
DraIII CACNNNGTG 1 cut(s) 26
Eam1104I CTCTTC 1 cut(s) 183
EarI CTCTTC 1 cut(s) 183
Eco130I CCWWGG 3 cut(s) 54, 396, 1106
Eco47I GGWCC 3 cut(s) 644, 947, 1039
EcoO109I RGGNCCY 1 cut(s) 409
EcoRII CCWGG 4 cut(s) 697, 882, 1018, 1144
EcoT14I CCWWGG 3 cut(s) 54, 396, 1106
EcoT22I ATGCAT 1 cut(s) 710
ErhI CCWWGG 3 cut(s) 54, 396, 1106
FaeI CATG 5 cut(s) 143, 708, 712, 755, 1193
FaqI GGGAC 1 cut(s) 349
FatI CATG 5 cut(s) 139, 704, 708, 751, 1189
FauI CCCGC 1 cut(s) 138
FblI GTMKAC 1 cut(s) 659
Fnu4HI GCNGC 6 cut(s) 74, 354, 431, 509, 726, 729
FokI GGATG 4 cut(s) 125, 344, 516, 734
Fsp4HI GCNGC 6 cut(s) 74, 354, 431, 509, 726, 729
FspBI CTAG 2 cut(s) 465, 980
GluI GCNGC 6 cut(s) 74, 354, 431, 509, 726, 729
GsuI CTGGAG 2 cut(s) 905, 936
HaeIII GGCC 1 cut(s) 410
HapII CCGG 1 cut(s) 86
HgaI GACGC 2 cut(s) 39, 749
Hin1I GRCGYC 1 cut(s) 1066
Hin1II CATG 5 cut(s) 143, 708, 712, 755, 1193
HincII GTYRAC 1 cut(s) 1085
HindII GTYRAC 1 cut(s) 1085
HinfI GANTC 5 cut(s) 29, 235, 323, 521, 838
HpaII CCGG 1 cut(s) 86
HphI GGTGA 4 cut(s) 499, 635, 788, 976
Hpy166II GTNNAC 3 cut(s) 546, 660, 1085
Hpy188I TCNGA 3 cut(s) 66, 1043, 1054
Hpy188III TCNNGA 1 cut(s) 140
Hpy8I GTNNAC 3 cut(s) 546, 660, 1085
HpyAV CCTTC 6 cut(s) 358, 535, 667, 711, 1123, 1172
HpyCH4III ACNGT 4 cut(s) 250, 553, 934, 1224
HpyCH4IV ACGT 3 cut(s) 483, 542, 1066
HpyCH4V TGCA 9 cut(s) 494, 546, 708, 728, 737, 742, 755, 899, 1189
HpyF10VI GCNNNNNNNGC 6 cut(s) 152, 221, 692, 734, 748, 757
HpyF3I CTNAG 7 cut(s) 23, 120, 182, 303, 312, 318, 654
HpySE526I ACGT 3 cut(s) 483, 542, 1066
Hsp92I GRCGYC 1 cut(s) 1066
Hsp92II CATG 5 cut(s) 143, 708, 712, 755, 1193
Kzo9I GATC 7 cut(s) 61, 97, 701, 940, 969, 1054, 1156
LguI GCTCTTC 1 cut(s) 183
LmnI GCTCC 2 cut(s) 700, 886
Lsp1109I GCAGC 4 cut(s) 85, 365, 712, 740
LweI GCATC 3 cut(s) 103, 503, 712
MaeI CTAG 2 cut(s) 465, 980
MaeII ACGT 3 cut(s) 483, 542, 1066
MaeIII GTNAC 5 cut(s) 18, 227, 460, 487, 925
MalI GATC 7 cut(s) 63, 99, 703, 942, 971, 1056, 1158
MboI GATC 7 cut(s) 61, 97, 701, 940, 969, 1054, 1156
MboII GAAGA 5 cut(s) 23, 170, 295, 979, 1016
MflI RGATCY 1 cut(s) 1054
MhlI GDGCHC 3 cut(s) 195, 548, 688
MluCI AATT 3 cut(s) 436, 618, 1152
MluI ACGCGT 1 cut(s) 48
MlyI GAGTC 1 cut(s) 530
MmeI TCCRAC 2 cut(s) 622, 748
Mph1103I ATGCAT 1 cut(s) 710
MseI TTAA 8 cut(s) 162, 243, 405, 444, 798, 843, 861, 1125
MspA1I CMGCKG 3 cut(s) 433, 956, 1061
MspCI CTTAAG 1 cut(s) 443
MspI CCGG 1 cut(s) 86
MspR9I CCNGG 4 cut(s) 699, 884, 1020, 1146
MvaI CCWGG 4 cut(s) 699, 884, 1020, 1146
MvnI CGCG 1 cut(s) 50
MwoI GCNNNNNNNGC 6 cut(s) 152, 221, 692, 734, 748, 757
NdeII GATC 7 cut(s) 61, 97, 701, 940, 969, 1054, 1156
NlaIII CATG 5 cut(s) 143, 708, 712, 755, 1193
NlaIV GGNNCC 2 cut(s) 411, 1017
NmeAIII GCCGAG 1 cut(s) 811
NmuCI GTSAC 4 cut(s) 18, 227, 487, 925
NsiI ATGCAT 1 cut(s) 710
NspI RCATGY 1 cut(s) 755
PaeI GCATGC 1 cut(s) 755
PagI TCATGA 1 cut(s) 139
PciSI GCTCTTC 1 cut(s) 183
PfeI GAWTC 4 cut(s) 29, 235, 323, 838
PfoI TCCNGGA 1 cut(s) 697
PkrI GCNGC 6 cut(s) 75, 355, 432, 510, 727, 730
PleI GAGTC 1 cut(s) 529
PpsI GAGTC 1 cut(s) 529
PsiI TTATAA 1 cut(s) 1076
Psp6I CCWGG 4 cut(s) 697, 882, 1018, 1144
PspGI CCWGG 4 cut(s) 697, 882, 1018, 1144
PspN4I GGNNCC 2 cut(s) 411, 1017
PspPI GGNCC 4 cut(s) 409, 644, 947, 1039
PstI CTGCAG 1 cut(s) 730
PsuI RGATCY 1 cut(s) 1054
PvuII CAGCTG 2 cut(s) 956, 1061
RsaI GTAC 1 cut(s) 978
RsaNI GTAC 1 cut(s) 977
SapI GCTCTTC 1 cut(s) 183
SaqAI TTAA 8 cut(s) 162, 243, 405, 444, 798, 843, 861, 1125
SatI GCNGC 6 cut(s) 74, 354, 431, 509, 726, 729
Sau3AI GATC 7 cut(s) 61, 97, 701, 940, 969, 1054, 1156
Sau96I GGNCC 4 cut(s) 409, 644, 947, 1039
SchI GAGTC 1 cut(s) 530
ScrFI CCNGG 4 cut(s) 699, 884, 1020, 1146
SduI GDGCHC 3 cut(s) 195, 548, 688
SfaNI GCATC 3 cut(s) 103, 503, 712
SfcI CTRYAG 4 cut(s) 249, 382, 726, 1176
SinI GGWCC 3 cut(s) 644, 947, 1039
SmlI CTYRAG 2 cut(s) 443, 811
SmoI CTYRAG 2 cut(s) 443, 811
SphI GCATGC 1 cut(s) 755
Sse9I AATT 3 cut(s) 436, 618, 1152
SsiI CCGC 5 cut(s) 131, 431, 508, 568, 1195
SspI AATATT 1 cut(s) 904
SspMI CTAG 2 cut(s) 465, 980
StyD4I CCNGG 4 cut(s) 697, 882, 1018, 1144
StyI CCWWGG 3 cut(s) 54, 396, 1106
TaaI ACNGT 4 cut(s) 250, 553, 934, 1224
TaiI ACGT 3 cut(s) 486, 545, 1069
TaqI TCGA 2 cut(s) 32, 631
TasI AATT 3 cut(s) 436, 618, 1152
TatI WGTACW 1 cut(s) 976
TauI GCSGC 2 cut(s) 433, 511
TfiI GAWTC 4 cut(s) 29, 235, 323, 838
Tru1I TTAA 8 cut(s) 162, 243, 405, 444, 798, 843, 861, 1125
Tru9I TTAA 8 cut(s) 162, 243, 405, 444, 798, 843, 861, 1125
TscAI CASTG 2 cut(s) 31, 232
TseFI GTSAC 4 cut(s) 18, 227, 487, 925
TseI GCWGC 4 cut(s) 73, 353, 725, 728
Tsp45I GTSAC 4 cut(s) 18, 227, 487, 925
TspDTI ATGAA 2 cut(s) 377, 594
TspRI CASTG 2 cut(s) 31, 232
Vha464I CTTAAG 1 cut(s) 443
VneI GTGCAC 1 cut(s) 544
VpaK11BI GGWCC 3 cut(s) 644, 947, 1039
XceI RCATGY 1 cut(s) 755
XmiI GTMKAC 1 cut(s) 659
XspI CTAG 2 cut(s) 465, 980
ZraI GACGTC 1 cut(s) 1067
Zsp2I ATGCAT 1 cut(s) 710
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.