Rmu_sc0021437.1_g000002

BRIGHT, ARID (A/T-rich interaction domain) domain

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0021437.1
Physical Location & Seq
Reverse (-)
10498 .. 13702
3205 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0021437.1_g000002.1.cds

Sequence Viewer

Length: 1722 bp
atggaggaaataggaaaagaagaggggaaaaatatggaggagggtctagaaaatgaaacccatgaccatgcacaacttgaagagggtcaagaaccaccgaaacccaactcggtcgatagtgtaatagtggagatgcagaagcttattggtgacagtggtgttgaaatgcctggtgacctcgagggcccggttgagttggctcccactgtcctcaaaaccgctgaagatgctgaaattgttactgacactaacaaagagctgcagggcgatactggaagtgataagcttgtcagtaatgtggattctgatgtgcatcgtgagagtgaggtgtctttgaaggttgaaagtgataagcttgtcaataatgtggactctgatgtgcatcatgagagtgaggtctctgtgaaggttgaaagtgataatcttgttggtaatgtggattctgatgtgcaacgtgagggtgaggtctgtccggagtatgtaagtgaagagaatggtaagcaaggggaagagctgaaggatgttaaggtcagtgaagccatcgaattagatgccagtgctgagactgataatcttgttggtaatggggatggggattcgcaccacacagctcagactaccatggacattgaaaaggaagataatgatggtgaggaagggaaagcactgaaggatgaggggagcatcaaggccaacccctccaatgaaccgcatatgaatgctgaaactaatattgttgtcagtcaggtggagcctgataggtgtggtgatggtgatgttgcaaaggcaaaactgacggatggggtgagcagcaaggctaacccctccagtgaactgcttgcaagtgctgaaactgataaggttgtttgtaagttggaacatgatatgcctcgtgatacgaaggttgcaagggagaaactggtggatgcggtgagcagtaaggccaagcgctctcccaatgaaccacctagcagtgttaaagctaataatgtttttaaggtagagcgtggtatgcctcaagataatgagttatcaatggagactgaatccgagtctgatgacgacgatgagaaaggacatgcagtaactggtgggttgagcagcaaaacaaagttctctctacaccatggcataaaggagcaacattcaaaatccaagtttcatgttggacgagaggttgggatgaagagtttggatccagggcgaacctttctcttggctccaggtgcaggaggtgatgagtcggggactgaagaggagcaagctgaattcatgaaggaggtggagaatttttataaagagaagcacttggaattcaaagcaccaaagttttacaaagaggaattgaatctgctcaagttatggagagctgtgatcaaacttggcggctatgaaaaggttacttcatgcaagttgtggcggcaggttggagaatcatttaatcccccaaagacttgtactactgtctcttggacttttcggattttctacgagaaggcattacttgagtttgaaaagcatagatggcatggcagtgagcttgctcttcctgaaccttctagagttgagattcgggctgatggtagtcaaacttgtggatcaggcaggacactaagggatgctgcagcagtgcagctcgtgccatgcagggttggcactctcaacgcctttttggaaatggcgaggttggtgatgcaaataccaaggcctggagaattttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

573

Amino Acids

62.95

Weight (kDa)

4.72

Isoelectric Point (pI)

36.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1296
AbsI CCTCGAGG 1 cut(s) 179
Acc36I ACCTGC 1 cut(s) 1414
AccB7I CCANNNNNTGG 1 cut(s) 1709
AccIII TCCGGA 1 cut(s) 472
AciI CCGC 5 cut(s) 219, 710, 929, 1386, 1420
AclWI GGATC 3 cut(s) 1190, 1203, 1606
AcsI RAATTY 4 cut(s) 1268, 1288, 1313, 1715
AcuI CTGAAG 4 cut(s) 243, 536, 689, 1272
AfaI GTAC 1 cut(s) 1459
AfeI AGCGCT 1 cut(s) 950
AfiI CCNNNNNNNGG 2 cut(s) 1229, 1709
AjnI CCWGG 4 cut(s) 169, 1198, 1222, 1708
Alw26I GTCTC 4 cut(s) 403, 557, 1034, 1471
AlwI GGATC 3 cut(s) 1190, 1203, 1606
AlwNI CAGNNNCTG 1 cut(s) 1088
Ama87I CYCGRG 1 cut(s) 179
Aor13HI TCCGGA 1 cut(s) 472
Aor51HI AGCGCT 1 cut(s) 950
AoxI GGCC 4 cut(s) 184, 690, 942, 1706
ApaI GGGCCC 1 cut(s) 188
ApeKI GCWGC 6 cut(s) 259, 810, 1101, 1622, 1625, 1633
ApoI RAATTY 4 cut(s) 1268, 1288, 1313, 1715
AspLEI GCGC 1 cut(s) 951
AspS9I GGNCC 2 cut(s) 184, 185
AsuC2I CCSGG 1 cut(s) 188
AvaI CYCGRG 1 cut(s) 179
BaeGI GKGCMC 1 cut(s) 188
BaeI ACNNNNGTAYC 2 cut(s) 888, 921
BamHI GGATCC 1 cut(s) 1195
BanII GRGCYC 1 cut(s) 188
BauI CACGAG 2 cut(s) 891, 1637
BbvI GCAGC 6 cut(s) 246, 822, 1113, 1609, 1637, 1645
BccI CCATC 7 cut(s) 548, 584, 641, 764, 794, 1518, 1574
BcgI CGANNNNNNTGC 2 cut(s) 533, 567
BciT130I CCWGG 4 cut(s) 171, 1200, 1224, 1710
BclI TGATCA 1 cut(s) 1374
BcnI CCSGG 1 cut(s) 188
BcoDI GTCTC 4 cut(s) 403, 557, 1034, 1471
BfaI CTAG 3 cut(s) 47, 969, 1560
BfmI CTRYAG 2 cut(s) 260, 1623
BfoI RGCGCY 1 cut(s) 952
BfuAI ACCTGC 1 cut(s) 1414
BisI GCNGC 8 cut(s) 260, 811, 1102, 1387, 1421, 1623, 1626, 1634
BlsI GCNGC 8 cut(s) 261, 812, 1103, 1388, 1422, 1624, 1627, 1635
Bme1390I CCNGG 5 cut(s) 171, 188, 1200, 1224, 1710
BmeT110I CYCGRG 1 cut(s) 179
BmgT120I GGNCC 2 cut(s) 184, 185
BmiI GGNNCC 5 cut(s) 186, 201, 753, 1197, 1221
BmrFI CCNGG 5 cut(s) 171, 188, 1200, 1224, 1710
BmsI GCATC 9 cut(s) 123, 217, 322, 391, 541, 693, 916, 1609, 1683
BpmI CTGGAG 2 cut(s) 811, 1206
BpuEI CTTGAG 3 cut(s) 1002, 1340, 1526
BpuMI CCSGG 1 cut(s) 188
BsaBI GATNNNNATC 2 cut(s) 312, 381
BsaI GGTCTC 1 cut(s) 403
BsaJI CCNNGG 4 cut(s) 621, 1126, 1199, 1703
BsaWI WCCGGW 1 cut(s) 472
Bsc4I CCNNNNNNNGG 2 cut(s) 1229, 1709
Bse1I ACTGG 5 cut(s) 277, 555, 828, 924, 1093
Bse8I GATNNNNATC 2 cut(s) 312, 381
BseAI TCCGGA 1 cut(s) 472
BseBI CCWGG 4 cut(s) 171, 1200, 1224, 1710
BseDI CCNNGG 4 cut(s) 621, 1126, 1199, 1703
BseGI GGATG 7 cut(s) 526, 595, 679, 805, 931, 1188, 1624
BseJI GATNNNNATC 2 cut(s) 312, 381
BseLI CCNNNNNNNGG 2 cut(s) 1229, 1709
BseMII CTCAG 2 cut(s) 552, 626
BseNI ACTGG 5 cut(s) 277, 555, 828, 924, 1093
BseRI GAGGAG 2 cut(s) 53, 1271
BseSI GKGCMC 1 cut(s) 188
BseXI GCAGC 6 cut(s) 246, 822, 1113, 1609, 1637, 1645
BsgI GTGCAG 2 cut(s) 1248, 1652
Bsh1285I CGRYCG 1 cut(s) 114
BshFI GGCC 4 cut(s) 186, 692, 944, 1708
BsiEI CGRYCG 1 cut(s) 114
BsiHKCI CYCGRG 1 cut(s) 179
BsiSI CCGG 2 cut(s) 188, 473
BslFI GGGAC 1 cut(s) 1261
BslI CCNNNNNNNGG 2 cut(s) 1229, 1709
BsmAI GTCTC 4 cut(s) 403, 557, 1034, 1471
BsmFI GGGAC 1 cut(s) 1261
BsmI GAATGC 1 cut(s) 724
BsnI GGCC 4 cut(s) 186, 692, 944, 1708
Bso31I GGTCTC 1 cut(s) 403
BsoBI CYCGRG 1 cut(s) 179
Bsp120I GGGCCC 1 cut(s) 184
Bsp1286I GDGCHC 1 cut(s) 188
Bsp13I TCCGGA 1 cut(s) 472
Bsp143I GATC 3 cut(s) 1195, 1374, 1598
Bsp19I CCATGG 2 cut(s) 621, 1126
BspACI CCGC 5 cut(s) 219, 710, 929, 1386, 1420
BspANI GGCC 4 cut(s) 186, 692, 944, 1708
BspCNI CTCAG 2 cut(s) 553, 625
BspEI TCCGGA 1 cut(s) 472
BspHI TCATGA 2 cut(s) 385, 1272
BspLI GGNNCC 5 cut(s) 186, 201, 753, 1197, 1221
BspMAI CTGCAG 2 cut(s) 264, 1627
BspMI ACCTGC 1 cut(s) 1414
BspPI GGATC 3 cut(s) 1190, 1203, 1606
BspQI GCTCTTC 2 cut(s) 504, 1551
BspTNI GGTCTC 1 cut(s) 403
BsrI ACTGG 5 cut(s) 277, 555, 828, 924, 1093
BssECI CCNNGG 4 cut(s) 621, 1126, 1199, 1703
BssMI GATC 3 cut(s) 1195, 1374, 1598
BssSI CACGAG 2 cut(s) 891, 1637
BssT1I CCWWGG 3 cut(s) 621, 1126, 1703
Bst2BI CACGAG 2 cut(s) 891, 1637
Bst2UI CCWGG 4 cut(s) 171, 1200, 1224, 1710
Bst4CI ACNGT 3 cut(s) 155, 208, 1465
Bst6I CTCTTC 7 cut(s) 15, 75, 483, 504, 1181, 1248, 1551
BstAPI GCANNNNNTGC 1 cut(s) 1639
BstC8I GCNNGC 3 cut(s) 840, 1263, 1542
BstDEI CTNAG 3 cut(s) 561, 612, 1613
BstDSI CCRYGG 2 cut(s) 621, 1126
BstEII GGTNACC 1 cut(s) 173
BstF5I GGATG 7 cut(s) 526, 595, 679, 805, 931, 1188, 1624
BstH2I RGCGCY 1 cut(s) 952
BstHHI GCGC 1 cut(s) 951
BstKTI GATC 3 cut(s) 1198, 1377, 1601
BstMAI GTCTC 4 cut(s) 403, 557, 1034, 1471
BstMBI GATC 3 cut(s) 1195, 1374, 1598
BstMCI CGRYCG 1 cut(s) 114
BstMWI GCNNNNNNNGC 6 cut(s) 227, 1012, 1226, 1525, 1639, 1653
BstNI CCWGG 4 cut(s) 171, 1200, 1224, 1710
BstNSI RCATGY 1 cut(s) 1082
BstPI GGTNACC 1 cut(s) 173
BstSCI CCNGG 5 cut(s) 169, 186, 1198, 1222, 1708
BstSFI CTRYAG 2 cut(s) 260, 1623
BstSLI GKGCMC 1 cut(s) 188
BstV1I GCAGC 6 cut(s) 246, 822, 1113, 1609, 1637, 1645
BstX2I RGATCY 1 cut(s) 1195
BstYI RGATCY 1 cut(s) 1195
BsuRI GGCC 4 cut(s) 186, 692, 944, 1708
BtgI CCRYGG 2 cut(s) 621, 1126
BtsCI GGATG 7 cut(s) 526, 595, 679, 805, 931, 1188, 1624
BtsI GCAGTG 3 cut(s) 979, 1540, 1635
BtsIMutI CAGTG 9 cut(s) 160, 204, 538, 562, 665, 835, 979, 1540, 1635
BveI ACCTGC 1 cut(s) 1414
Cac8I GCNNGC 3 cut(s) 840, 1263, 1542
CaiI CAGNNNCTG 1 cut(s) 1088
CciI TCATGA 2 cut(s) 385, 1272
CfoI GCGC 1 cut(s) 951
Cfr13I GGNCC 2 cut(s) 184, 185
Csp6I GTAC 1 cut(s) 1458
CviQI GTAC 1 cut(s) 1458
DdeI CTNAG 3 cut(s) 561, 612, 1613
DpnI GATC 3 cut(s) 1197, 1376, 1600
DpnII GATC 3 cut(s) 1195, 1374, 1598
Eam1104I CTCTTC 7 cut(s) 15, 75, 483, 504, 1181, 1248, 1551
EarI CTCTTC 7 cut(s) 15, 75, 483, 504, 1181, 1248, 1551
Eco130I CCWWGG 3 cut(s) 621, 1126, 1703
Eco147I AGGCCT 1 cut(s) 1708
Eco24I GRGCYC 1 cut(s) 188
Eco31I GGTCTC 1 cut(s) 403
Eco47III AGCGCT 1 cut(s) 950
Eco57I CTGAAG 4 cut(s) 243, 536, 689, 1272
Eco88I CYCGRG 1 cut(s) 179
Eco91I GGTNACC 1 cut(s) 173
EcoO109I RGGNCCY 1 cut(s) 184
EcoO65I GGTNACC 1 cut(s) 173
EcoRI GAATTC 2 cut(s) 1268, 1313
EcoRII CCWGG 4 cut(s) 169, 1198, 1222, 1708
EcoT14I CCWWGG 3 cut(s) 621, 1126, 1703
EcoT38I GRGCYC 1 cut(s) 188
ErhI CCWWGG 3 cut(s) 621, 1126, 1703
FaqI GGGAC 1 cut(s) 1261
FauNDI CATATG 1 cut(s) 714
FbaI TGATCA 1 cut(s) 1374
Fnu4HI GCNGC 8 cut(s) 260, 811, 1102, 1387, 1421, 1623, 1626, 1634
FokI GGATG 7 cut(s) 533, 602, 686, 812, 938, 1195, 1631
FriOI GRGCYC 1 cut(s) 188
Fsp4HI GCNGC 8 cut(s) 260, 811, 1102, 1387, 1421, 1623, 1626, 1634
FspBI CTAG 3 cut(s) 47, 969, 1560
GlaI GCGC 1 cut(s) 950
GluI GCNGC 8 cut(s) 260, 811, 1102, 1387, 1421, 1623, 1626, 1634
GsuI CTGGAG 2 cut(s) 811, 1206
HaeII RGCGCY 1 cut(s) 952
HaeIII GGCC 4 cut(s) 186, 692, 944, 1708
HapII CCGG 2 cut(s) 188, 473
HhaI GCGC 1 cut(s) 951
Hin6I GCGC 1 cut(s) 949
HinP1I GCGC 1 cut(s) 949
HindIII AAGCTT 3 cut(s) 140, 284, 353
HpaII CCGG 2 cut(s) 188, 473
Hpy166II GTNNAC 2 cut(s) 370, 833
Hpy188I TCNGA 7 cut(s) 307, 376, 445, 615, 1051, 1057, 1482
Hpy8I GTNNAC 2 cut(s) 370, 833
Hpy99I CGWCG 1 cut(s) 1067
HpyAV CCTTC 9 cut(s) 331, 400, 511, 650, 664, 895, 1270, 1489, 1566
HpyCH4III ACNGT 3 cut(s) 155, 208, 1465
HpyCH4IV ACGT 1 cut(s) 454
HpyF10VI GCNNNNNNNGC 6 cut(s) 227, 1012, 1226, 1525, 1639, 1653
HpyF3I CTNAG 3 cut(s) 561, 612, 1613
HpySE526I ACGT 1 cut(s) 454
HspAI GCGC 1 cut(s) 949
Kpn2I TCCGGA 1 cut(s) 472
Ksp22I TGATCA 1 cut(s) 1374
Kzo9I GATC 3 cut(s) 1195, 1374, 1598
LguI GCTCTTC 2 cut(s) 504, 1551
LmnI GCTCC 6 cut(s) 205, 681, 751, 1138, 1225, 1258
Lsp1109I GCAGC 6 cut(s) 246, 822, 1113, 1609, 1637, 1645
LweI GCATC 9 cut(s) 123, 217, 322, 391, 541, 693, 916, 1609, 1683
MaeI CTAG 3 cut(s) 47, 969, 1560
MaeII ACGT 1 cut(s) 454
MaeIII GTNAC 5 cut(s) 149, 173, 238, 1084, 1399
MalI GATC 3 cut(s) 1197, 1376, 1600
MboI GATC 3 cut(s) 1195, 1374, 1598
MboII GAAGA 9 cut(s) 32, 92, 236, 500, 521, 650, 1198, 1265, 1538
MflI RGATCY 1 cut(s) 1195
MhlI GDGCHC 1 cut(s) 188
MluCI AATT 7 cut(s) 234, 545, 1268, 1288, 1313, 1343, 1715
MlyI GAGTC 3 cut(s) 365, 1061, 1250
MmeI TCCRAC 3 cut(s) 855, 1147, 1408
MroI TCCGGA 1 cut(s) 472
MseI TTAA 4 cut(s) 525, 978, 996, 1440
MslI CAYNNNNRTG 4 cut(s) 66, 390, 717, 1533
MspA1I CMGCKG 1 cut(s) 221
MspI CCGG 2 cut(s) 188, 473
MspR9I CCNGG 5 cut(s) 171, 188, 1200, 1224, 1710
Mva1269I GAATGC 1 cut(s) 724
MvaI CCWGG 4 cut(s) 171, 1200, 1224, 1710
MwoI GCNNNNNNNGC 6 cut(s) 227, 1012, 1226, 1525, 1639, 1653
NciI CCSGG 1 cut(s) 188
NcoI CCATGG 2 cut(s) 621, 1126
NdeI CATATG 1 cut(s) 714
NdeII GATC 3 cut(s) 1195, 1374, 1598
NlaIV GGNNCC 5 cut(s) 186, 201, 753, 1197, 1221
NmuCI GTSAC 2 cut(s) 149, 173
NspI RCATGY 1 cut(s) 1082
PaeR7I CTCGAG 1 cut(s) 179
PagI TCATGA 2 cut(s) 385, 1272
PceI AGGCCT 1 cut(s) 1708
PciSI GCTCTTC 2 cut(s) 504, 1551
PctI GAATGC 1 cut(s) 724
PfeI GAWTC 7 cut(s) 302, 440, 596, 1046, 1348, 1433, 1570
PflMI CCANNNNNTGG 1 cut(s) 1709
PkrI GCNGC 8 cut(s) 261, 812, 1103, 1388, 1422, 1624, 1627, 1635
PleI GAGTC 3 cut(s) 365, 1060, 1249
PpsI GAGTC 3 cut(s) 365, 1060, 1249
PsiI TTATAA 1 cut(s) 1296
Psp6I CCWGG 4 cut(s) 169, 1198, 1222, 1708
PspEI GGTNACC 1 cut(s) 173
PspGI CCWGG 4 cut(s) 169, 1198, 1222, 1708
PspN4I GGNNCC 5 cut(s) 186, 201, 753, 1197, 1221
PspOMI GGGCCC 1 cut(s) 184
PspPI GGNCC 2 cut(s) 184, 185
PspXI VCTCGAGB 1 cut(s) 179
PstI CTGCAG 2 cut(s) 264, 1627
PstNI CAGNNNCTG 1 cut(s) 1088
PsuI RGATCY 1 cut(s) 1195
RsaI GTAC 1 cut(s) 1459
RsaNI GTAC 1 cut(s) 1458
RseI CAYNNNNRTG 4 cut(s) 66, 390, 717, 1533
SapI GCTCTTC 2 cut(s) 504, 1551
SaqAI TTAA 4 cut(s) 525, 978, 996, 1440
SatI GCNGC 8 cut(s) 260, 811, 1102, 1387, 1421, 1623, 1626, 1634
Sau3AI GATC 3 cut(s) 1195, 1374, 1598
Sau96I GGNCC 2 cut(s) 184, 185
SchI GAGTC 3 cut(s) 365, 1061, 1250
ScrFI CCNGG 5 cut(s) 171, 188, 1200, 1224, 1710
SduI GDGCHC 1 cut(s) 188
SfaNI GCATC 9 cut(s) 123, 217, 322, 391, 541, 693, 916, 1609, 1683
SfcI CTRYAG 2 cut(s) 260, 1623
Sfr274I CTCGAG 1 cut(s) 179
SlaI CTCGAG 1 cut(s) 179
SmiMI CAYNNNNRTG 4 cut(s) 66, 390, 717, 1533
SmlI CTYRAG 4 cut(s) 179, 1017, 1355, 1505
SmoI CTYRAG 4 cut(s) 179, 1017, 1355, 1505
Sse9I AATT 7 cut(s) 234, 545, 1268, 1288, 1313, 1343, 1715
SseBI AGGCCT 1 cut(s) 1708
SsiI CCGC 5 cut(s) 219, 710, 929, 1386, 1420
SspI AATATT 1 cut(s) 733
SspMI CTAG 3 cut(s) 47, 969, 1560
StuI AGGCCT 1 cut(s) 1708
StyD4I CCNGG 5 cut(s) 169, 186, 1198, 1222, 1708
StyI CCWWGG 3 cut(s) 621, 1126, 1703
TaaI ACNGT 3 cut(s) 155, 208, 1465
TaiI ACGT 1 cut(s) 457
TaqI TCGA 3 cut(s) 114, 180, 543
TaqII GACCGA 1 cut(s) 100
TasI AATT 7 cut(s) 234, 545, 1268, 1288, 1313, 1343, 1715
TatI WGTACW 1 cut(s) 1457
TauI GCSGC 2 cut(s) 1389, 1423
TfiI GAWTC 7 cut(s) 302, 440, 596, 1046, 1348, 1433, 1570
Tru1I TTAA 4 cut(s) 525, 978, 996, 1440
Tru9I TTAA 4 cut(s) 525, 978, 996, 1440
TscAI CASTG 9 cut(s) 160, 211, 538, 562, 672, 835, 979, 1540, 1635
TseFI GTSAC 2 cut(s) 149, 173
TseI GCWGC 6 cut(s) 259, 810, 1101, 1622, 1625, 1633
Tsp45I GTSAC 2 cut(s) 149, 173
TspGWI ACGGA 1 cut(s) 812
TspRI CASTG 9 cut(s) 160, 211, 538, 562, 672, 835, 979, 1540, 1635
Van91I CCANNNNNTGG 1 cut(s) 1709
XapI RAATTY 4 cut(s) 1268, 1288, 1313, 1715
XbaI TCTAGA 2 cut(s) 46, 1559
XceI RCATGY 1 cut(s) 1082
XhoI CTCGAG 1 cut(s) 179
XspI CTAG 3 cut(s) 47, 969, 1560
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.