Rmu_sc0000854.1_g000027

AT-rich interactive domain-containing protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000854.1
Physical Location & Seq
Reverse (-)
156906 .. 164820
7915 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000854.1_g000027.1.cds

Sequence Viewer

Length: 1257 bp
atggagggcaaggaaaaactgggcaaagatccgcagaatggttctgatgctaaggaggaacctactgggcccaaggaggagcagccacctcaaacagaaaatgatgcagacagtaatccaggtgatgaccaaattatgagggacgcatttcaggatcacatggctattgatgagctaaaggttggtgatgttaaagctaatgatcctctgcttactgaggtgcgcataggaagaaaaggcaatggcagtagtgccagagtcgcaaacaagctcaaacaaactgtagataaacatgtgggggagtcgaagagttggttgtctgattccgagggtgaggaatcggaggatgggacaccgttgcagcaagcagcttttatgagggagctggagagtttctataaggagaggtctttggaatttaaggcccctaagttttatggagaaccactaaattgcctcaagttatggagagctgtcgttagagctggtggttacgatgtggtgacttcatcaaagttatggcggcaagtaggagagtcctttcatccccccaagacgtgcacaacagtatcttggacgtttcgcatcttttatgagaaggcacttttggaatatgaaaagcataagagacaaactggggagattcagacagccattggatcgctcactcagtgtacaactgctgtgaaggaggcaagtagtcatcaagcacctggatcaggtagggcacggagggatgctgcagcgcgtgctatgcagggttggcatgcacagcgtcttgttggatatggtgagattgctgagcctattgttaaggacaagaacttaagtactacgccaaagcgtgaaaagaatcttaaaagcattggttctattaaacacaaaacaccaaccagcctggatcatgctgagaaaactgcaatcgttgaggcagataagcaggtagtcacgaatattgtggatcttggaccgccagcagattgggtgaagatcagtgtacgagaaactaaagattgctttgaggtatatgctttggtaccaggtcttctgcgtgaggaggtgcgagtacaatcagatcctgctggacgtctggttataacaggtcagccagagcagcttgacaacccttggggcattacaccatttaaaaaggttgtgagcttacctggaaggattgatccaatacagacatcggctgtggttagcctacatggccggttattcgtgcgtgttccttttgaacaaggatcattttga

Protein Analysis

418

Amino Acids

46.37

Weight (kDa)

6.55

Isoelectric Point (pI)

36.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1097
AatII GACGTC 1 cut(s) 1090
Acc16I TGCGCA 1 cut(s) 224
Acc36I ACCTGC 1 cut(s) 931
Acc65I GGTACC 1 cut(s) 1036
AccB1I GGYRCC 1 cut(s) 1036
AccII CGCG 1 cut(s) 748
AciI CCGC 3 cut(s) 32, 523, 971
AcoI YGGCCR 1 cut(s) 1213
AcsI RAATTY 1 cut(s) 416
AcyI GRCGYC 1 cut(s) 1087
AdeI CACNNNGTG 1 cut(s) 672
AfaI GTAC 5 cut(s) 676, 832, 999, 1038, 1068
AfiI CCNNNNNNNGG 2 cut(s) 38, 719
AflII CTTAAG 1 cut(s) 826
AflIII ACRYGT 1 cut(s) 292
AgsI TTSAA 1 cut(s) 1241
AjiI CACGTC 1 cut(s) 558
AjnI CCWGG 5 cut(s) 118, 712, 897, 1039, 1165
AjuI GAANNNNNNNTTGG 2 cut(s) 590, 622
AluBI AGCT 9 cut(s) 175, 197, 271, 371, 385, 473, 485, 1117, 1161
AluI AGCT 9 cut(s) 175, 197, 271, 371, 385, 473, 485, 1117, 1161
Alw21I GWGCWC 1 cut(s) 563
Alw26I GTCTC 1 cut(s) 622
Alw44I GTGCAC 1 cut(s) 559
AlwNI CAGNNNCTG 1 cut(s) 1079
AoxI GGCC 3 cut(s) 68, 423, 1213
ApaI GGGCCC 1 cut(s) 72
ApaLI GTGCAC 1 cut(s) 559
ApeKI GCWGC 6 cut(s) 82, 361, 368, 740, 743, 1114
ApoI RAATTY 1 cut(s) 416
Asp718I GGTACC 1 cut(s) 1036
AspLEI GCGC 2 cut(s) 225, 748
AspS9I GGNCC 4 cut(s) 68, 69, 424, 968
AsuHPI GGTGA 6 cut(s) 134, 197, 344, 514, 803, 997
AvaII GGWCC 1 cut(s) 968
BaeGI GKGCMC 3 cut(s) 72, 563, 730
BaeI ACNNNNGTAYC 2 cut(s) 552, 585
BanI GGYRCC 1 cut(s) 1036
BanII GRGCYC 1 cut(s) 72
BarI GAAGNNNNNNTAC 2 cut(s) 1029, 1061
BbsI GAAGAC 1 cut(s) 1037
Bbv12I GWGCWC 1 cut(s) 563
BbvI GCAGC 6 cut(s) 94, 373, 380, 727, 755, 1126
BccI CCATC 1 cut(s) 341
BciT130I CCWGG 5 cut(s) 120, 714, 899, 1041, 1167
BcoDI GTCTC 1 cut(s) 622
BfmI CTRYAG 2 cut(s) 282, 741
BfrI CTTAAG 1 cut(s) 826
BfuAI ACCTGC 1 cut(s) 931
BglI GCCNNNNNGGC 1 cut(s) 1212
BisI GCNGC 7 cut(s) 83, 362, 369, 524, 741, 744, 1115
BlpI GCTNAGC 1 cut(s) 801
BlsI GCNGC 7 cut(s) 84, 363, 370, 525, 742, 745, 1116
BmcAI AGTACT 1 cut(s) 832
Bme1390I CCNGG 5 cut(s) 120, 714, 899, 1041, 1167
Bme18I GGWCC 1 cut(s) 968
BmgBI CACGTC 1 cut(s) 558
BmgT120I GGNCC 4 cut(s) 68, 69, 424, 968
BmiI GGNNCC 4 cut(s) 60, 70, 426, 1038
BmrFI CCNGG 5 cut(s) 120, 714, 899, 1041, 1167
BmrI ACTGGG 3 cut(s) 29, 75, 645
BmsI GCATC 4 cut(s) 37, 94, 594, 727
BmuI ACTGGG 3 cut(s) 29, 75, 645
BpiI GAAGAC 1 cut(s) 1037
BpmI CTGGAG 1 cut(s) 407
Bpu10I CCTNAGC 1 cut(s) 51
Bpu1102I GCTNAGC 1 cut(s) 801
BpuEI CTTGAG 1 cut(s) 443
BsaHI GRCGYC 1 cut(s) 1087
BsaJI CCNNGG 3 cut(s) 72, 327, 1127
Bsc4I CCNNNNNNNGG 2 cut(s) 38, 719
Bse118I RCCGGY 1 cut(s) 1215
Bse1I ACTGG 3 cut(s) 24, 70, 640
Bse3DI GCAATG 1 cut(s) 247
BseBI CCWGG 5 cut(s) 120, 714, 899, 1041, 1167
BseDI CCNNGG 3 cut(s) 72, 327, 1127
BseGI GGATG 3 cut(s) 352, 544, 742
BseLI CCNNNNNNNGG 2 cut(s) 38, 719
BseMI GCAATG 1 cut(s) 247
BseMII CTCAG 4 cut(s) 207, 683, 792, 900
BseNI ACTGG 3 cut(s) 24, 70, 640
BseRI GAGGAG 2 cut(s) 92, 1070
BseSI GKGCMC 3 cut(s) 72, 563, 730
BseXI GCAGC 6 cut(s) 94, 373, 380, 727, 755, 1126
Bsh1236I CGCG 1 cut(s) 748
BshFI GGCC 3 cut(s) 70, 425, 1215
BshNI GGYRCC 1 cut(s) 1036
BsiHKAI GWGCWC 1 cut(s) 563
BsiSI CCGG 1 cut(s) 1216
BslFI GGGAC 2 cut(s) 155, 364
BslI CCNNNNNNNGG 2 cut(s) 38, 719
BsmAI GTCTC 1 cut(s) 622
BsmFI GGGAC 2 cut(s) 155, 364
BsnI GGCC 3 cut(s) 70, 425, 1215
Bsp120I GGGCCC 1 cut(s) 68
Bsp1286I GDGCHC 3 cut(s) 72, 563, 730
Bsp1407I TGTACA 1 cut(s) 674
Bsp1720I GCTNAGC 1 cut(s) 801
BspACI CCGC 3 cut(s) 32, 523, 971
BspANI GGCC 3 cut(s) 70, 425, 1215
BspCNI CTCAG 4 cut(s) 208, 682, 793, 901
BspFNI CGCG 1 cut(s) 748
BspLI GGNNCC 4 cut(s) 60, 70, 426, 1038
BspMAI CTGCAG 1 cut(s) 745
BspMI ACCTGC 1 cut(s) 931
BspT107I GGYRCC 1 cut(s) 1036
BspTI CTTAAG 1 cut(s) 826
BsrDI GCAATG 1 cut(s) 247
BsrFI RCCGGY 1 cut(s) 1215
BsrGI TGTACA 1 cut(s) 674
BsrI ACTGG 3 cut(s) 24, 70, 640
BssAI RCCGGY 1 cut(s) 1215
BssECI CCNNGG 3 cut(s) 72, 327, 1127
BssNI GRCGYC 1 cut(s) 1087
BssT1I CCWWGG 2 cut(s) 72, 1127
Bst2UI CCWGG 5 cut(s) 120, 714, 899, 1041, 1167
Bst4CI ACNGT 4 cut(s) 113, 283, 357, 568
Bst6I CTCTTC 1 cut(s) 302
BstACI GRCGYC 1 cut(s) 1087
BstAFI CTTAAG 1 cut(s) 826
BstAPI GCANNNNNTGC 1 cut(s) 749
BstAUI TGTACA 1 cut(s) 674
BstC8I GCNNGC 4 cut(s) 366, 750, 768, 975
BstDEI CTNAG 6 cut(s) 51, 216, 429, 669, 801, 909
BstENI CCTNNNNNAGG 1 cut(s) 717
BstF5I GGATG 3 cut(s) 352, 544, 742
BstFNI CGCG 1 cut(s) 748
BstHHI GCGC 2 cut(s) 225, 748
BstMAI GTCTC 1 cut(s) 622
BstMWI GCNNNNNNNGC 7 cut(s) 260, 749, 754, 763, 772, 1114, 1212
BstNI CCWGG 5 cut(s) 120, 714, 899, 1041, 1167
BstNSI RCATGY 2 cut(s) 296, 770
BstSCI CCNGG 5 cut(s) 118, 712, 897, 1039, 1165
BstSFI CTRYAG 2 cut(s) 282, 741
BstSLI GKGCMC 3 cut(s) 72, 563, 730
BstUI CGCG 1 cut(s) 748
BstV1I GCAGC 6 cut(s) 94, 373, 380, 727, 755, 1126
BstV2I GAAGAC 1 cut(s) 1037
BstX2I RGATCY 3 cut(s) 28, 961, 1075
BstXI CCANNNNNNTGG 1 cut(s) 981
BstYI RGATCY 3 cut(s) 28, 961, 1075
BsuRI GGCC 3 cut(s) 70, 425, 1215
BtrI CACGTC 1 cut(s) 558
BtsCI GGATG 3 cut(s) 352, 544, 742
BtsIMutI CAGTG 2 cut(s) 677, 1000
BveI ACCTGC 1 cut(s) 931
Cac8I GCNNGC 4 cut(s) 366, 750, 768, 975
CaiI CAGNNNCTG 1 cut(s) 1079
CfoI GCGC 2 cut(s) 225, 748
Cfr10I RCCGGY 1 cut(s) 1215
Cfr13I GGNCC 4 cut(s) 68, 69, 424, 968
CseI GACGC 2 cut(s) 152, 764
CsiI ACCWGGT 1 cut(s) 1039
Csp6I GTAC 5 cut(s) 675, 831, 998, 1037, 1067
CviAII CATG 5 cut(s) 160, 293, 767, 905, 1211
CviQI GTAC 5 cut(s) 675, 831, 998, 1037, 1067
DdeI CTNAG 6 cut(s) 51, 216, 429, 669, 801, 909
DraI TTTAAA 1 cut(s) 1147
DraIII CACNNNGTG 1 cut(s) 672
EaeI YGGCCR 1 cut(s) 1213
Eam1104I CTCTTC 1 cut(s) 302
EarI CTCTTC 1 cut(s) 302
Eco130I CCWWGG 2 cut(s) 72, 1127
Eco24I GRGCYC 1 cut(s) 72
Eco47I GGWCC 1 cut(s) 968
EcoNI CCTNNNNNAGG 1 cut(s) 717
EcoO109I RGGNCCY 1 cut(s) 424
EcoRII CCWGG 5 cut(s) 118, 712, 897, 1039, 1165
EcoT14I CCWWGG 2 cut(s) 72, 1127
EcoT38I GRGCYC 1 cut(s) 72
ErhI CCWWGG 2 cut(s) 72, 1127
FaeI CATG 5 cut(s) 163, 296, 770, 908, 1214
FaqI GGGAC 2 cut(s) 155, 364
FatI CATG 5 cut(s) 159, 292, 766, 904, 1210
Fnu4HI GCNGC 7 cut(s) 83, 362, 369, 524, 741, 744, 1115
FokI GGATG 3 cut(s) 359, 531, 749
FriOI GRGCYC 1 cut(s) 72
Fsp4HI GCNGC 7 cut(s) 83, 362, 369, 524, 741, 744, 1115
FspAI RTGCGCAY 1 cut(s) 224
FspI TGCGCA 1 cut(s) 224
GlaI GCGC 2 cut(s) 224, 747
GluI GCNGC 7 cut(s) 83, 362, 369, 524, 741, 744, 1115
GsuI CTGGAG 1 cut(s) 407
HaeIII GGCC 3 cut(s) 70, 425, 1215
HapII CCGG 1 cut(s) 1216
HgaI GACGC 2 cut(s) 152, 764
HhaI GCGC 2 cut(s) 225, 748
Hin1I GRCGYC 1 cut(s) 1087
Hin1II CATG 5 cut(s) 163, 296, 770, 908, 1214
Hin6I GCGC 2 cut(s) 223, 746
HinP1I GCGC 2 cut(s) 223, 746
HinfI GANTC 7 cut(s) 258, 302, 323, 338, 536, 643, 853
HpaII CCGG 1 cut(s) 1216
HphI GGTGA 6 cut(s) 134, 197, 344, 514, 803, 997
Hpy166II GTNNAC 3 cut(s) 561, 675, 998
Hpy188I TCNGA 6 cut(s) 46, 322, 328, 343, 648, 1075
Hpy188III TCNNGA 2 cut(s) 152, 949
Hpy8I GTNNAC 3 cut(s) 561, 675, 998
HpyAV CCTTC 3 cut(s) 592, 682, 1164
HpyCH4III ACNGT 4 cut(s) 113, 283, 357, 568
HpyCH4IV ACGT 3 cut(s) 557, 578, 1087
HpyCH4V TGCA 7 cut(s) 107, 361, 561, 743, 757, 770, 920
HpyF10VI GCNNNNNNNGC 7 cut(s) 260, 749, 754, 763, 772, 1114, 1212
HpyF3I CTNAG 6 cut(s) 51, 216, 429, 669, 801, 909
HpySE526I ACGT 3 cut(s) 557, 578, 1087
Hsp92I GRCGYC 1 cut(s) 1087
Hsp92II CATG 5 cut(s) 163, 296, 770, 908, 1214
HspAI GCGC 2 cut(s) 223, 746
KpnI GGTACC 1 cut(s) 1040
LmnI GCTCC 2 cut(s) 79, 382
Lsp1109I GCAGC 6 cut(s) 94, 373, 380, 727, 755, 1126
LweI GCATC 4 cut(s) 37, 94, 594, 727
MabI ACCWGGT 1 cut(s) 1039
MaeII ACGT 3 cut(s) 557, 578, 1087
MaeIII GTNAC 3 cut(s) 491, 502, 946
MboII GAAGA 4 cut(s) 243, 319, 1000, 1037
MflI RGATCY 3 cut(s) 28, 961, 1075
MhlI GDGCHC 3 cut(s) 72, 563, 730
MluCI AATT 3 cut(s) 132, 416, 451
MlyI GAGTC 3 cut(s) 267, 311, 545
MmeI TCCRAC 1 cut(s) 763
MseI TTAA 7 cut(s) 192, 420, 813, 827, 858, 876, 1146
MspCI CTTAAG 1 cut(s) 826
MspI CCGG 1 cut(s) 1216
MspR9I CCNGG 5 cut(s) 120, 714, 899, 1041, 1167
MvaI CCWGG 5 cut(s) 120, 714, 899, 1041, 1167
MvnI CGCG 1 cut(s) 748
MwoI GCNNNNNNNGC 7 cut(s) 260, 749, 754, 763, 772, 1114, 1212
NlaIII CATG 5 cut(s) 163, 296, 770, 908, 1214
NlaIV GGNNCC 4 cut(s) 60, 70, 426, 1038
NmuCI GTSAC 2 cut(s) 502, 946
NsbI TGCGCA 1 cut(s) 224
NspI RCATGY 2 cut(s) 296, 770
PaeI GCATGC 1 cut(s) 770
PciI ACATGT 1 cut(s) 292
PfeI GAWTC 4 cut(s) 323, 338, 643, 853
PkrI GCNGC 7 cut(s) 84, 363, 370, 525, 742, 745, 1116
PleI GAGTC 3 cut(s) 266, 310, 544
PpsI GAGTC 3 cut(s) 266, 310, 544
PscI ACATGT 1 cut(s) 292
PsiI TTATAA 1 cut(s) 1097
Psp6I CCWGG 5 cut(s) 118, 712, 897, 1039, 1165
PspGI CCWGG 5 cut(s) 118, 712, 897, 1039, 1165
PspN4I GGNNCC 4 cut(s) 60, 70, 426, 1038
PspOMI GGGCCC 1 cut(s) 68
PspPI GGNCC 4 cut(s) 68, 69, 424, 968
PstI CTGCAG 1 cut(s) 745
PstNI CAGNNNCTG 1 cut(s) 1079
PsuI RGATCY 3 cut(s) 28, 961, 1075
RsaI GTAC 5 cut(s) 676, 832, 999, 1038, 1068
RsaNI GTAC 5 cut(s) 675, 831, 998, 1037, 1067
SaqAI TTAA 7 cut(s) 192, 420, 813, 827, 858, 876, 1146
SatI GCNGC 7 cut(s) 83, 362, 369, 524, 741, 744, 1115
Sau96I GGNCC 4 cut(s) 68, 69, 424, 968
ScaI AGTACT 1 cut(s) 832
SchI GAGTC 3 cut(s) 267, 311, 545
ScrFI CCNGG 5 cut(s) 120, 714, 899, 1041, 1167
SduI GDGCHC 3 cut(s) 72, 563, 730
SexAI ACCWGGT 1 cut(s) 1039
SfaNI GCATC 4 cut(s) 37, 94, 594, 727
SfcI CTRYAG 2 cut(s) 282, 741
SinI GGWCC 1 cut(s) 968
SmlI CTYRAG 2 cut(s) 458, 826
SmoI CTYRAG 2 cut(s) 458, 826
SphI GCATGC 1 cut(s) 770
Sse9I AATT 3 cut(s) 132, 416, 451
SsiI CCGC 3 cut(s) 32, 523, 971
SspI AATATT 1 cut(s) 955
StyD4I CCNGG 5 cut(s) 118, 712, 897, 1039, 1165
StyI CCWWGG 2 cut(s) 72, 1127
TaaI ACNGT 4 cut(s) 113, 283, 357, 568
TaiI ACGT 3 cut(s) 560, 581, 1090
TaqI TCGA 1 cut(s) 305
TasI AATT 3 cut(s) 132, 416, 451
TatI WGTACW 3 cut(s) 674, 830, 1066
TauI GCSGC 1 cut(s) 526
TfiI GAWTC 4 cut(s) 323, 338, 643, 853
Tru1I TTAA 7 cut(s) 192, 420, 813, 827, 858, 876, 1146
Tru9I TTAA 7 cut(s) 192, 420, 813, 827, 858, 876, 1146
TscAI CASTG 2 cut(s) 677, 1000
TseFI GTSAC 2 cut(s) 502, 946
TseI GCWGC 6 cut(s) 82, 361, 368, 740, 743, 1114
Tsp45I GTSAC 2 cut(s) 502, 946
TspDTI ATGAA 3 cut(s) 498, 533, 630
TspGWI ACGGA 1 cut(s) 745
TspRI CASTG 2 cut(s) 677, 1000
Vha464I CTTAAG 1 cut(s) 826
VneI GTGCAC 1 cut(s) 559
VpaK11BI GGWCC 1 cut(s) 968
XagI CCTNNNNNAGG 1 cut(s) 717
XapI RAATTY 1 cut(s) 416
XceI RCATGY 2 cut(s) 296, 770
ZraI GACGTC 1 cut(s) 1088
ZrmI AGTACT 1 cut(s) 832
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.