Rorug06G0141500

BRIGHT, ARID (A/T-rich interaction domain) domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0001717
Physical Location & Seq
Forward (+)
20080623 .. 20082837
2215 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0141500.1

Sequence Viewer

Length: 651 bp
ATGAAGATCCGGTGCGATGTGTGTGACAAAGCTGAGGCCACTGTGTTCTGCTCAGCTGATGAAGCAGCTCTCTGCGATGTCTGTGATCGCCGTGTTCACCATGCAAATAAGCTTGCAAGCAAACACAAGCGCTTCTTTCTTCTCCAACCAACTTGCAAAGACTCCCCTCATTGTGATATCTGTCAGGAAAGGCGCGGATTCTTCTTCTGTCAAGAAGACAGAGCAATTCTTTGCAGGGAATGTGACCATTCAATCCACAACGCCAATGAACACACTAAGAAACACAACAGGTTTCTTCTCGCTGGTGTAAAGCTGTCTGCTGATTCTACTCTGTATCCAACTTCATCATCATCATGCTCTACCTTCTCTGATGACATAGTCATCATCAACAGTAGTGATCATGCAAGAGTAGCCTCCAAGTCATCAACAAAGAGACCTAGAACAAGATGCAATGAACAAAAATTGTCATCCTCATCATATAAGGTAGAGGAGAATTGTTCTATCAGTGACAATGGTTCGGTGATTTCAACAAACAGCATATCCGAGTACTTGATGGGAGACCAGATCACCGAGTGGCGTGTGGAAGACCTTCTTGATGTCTCATTTGAATTTGATGGTTTCTATGAGGTTGGAAGTGCACCTTACATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ARID HSP20

Protein Analysis

216

Amino Acids

24.38

Weight (kDa)

5.98

Isoelectric Point (pI)

51.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-B_box PF00643 3 - 44 2.3e-06 B-box zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 195
AciI CCGC 1 cut(s) 195
AcsI RAATTY 1 cut(s) 608
AdeI CACNNNGTG 1 cut(s) 573
AfaI GTAC 1 cut(s) 548
AfeI AGCGCT 1 cut(s) 131
AflIII ACRYGT 1 cut(s) 645
AgsI TTSAA 3 cut(s) 252, 528, 608
AluBI AGCT 5 cut(s) 32, 56, 68, 112, 313
AluI AGCT 5 cut(s) 32, 56, 68, 112, 313
Alw21I GWGCWC 1 cut(s) 640
Alw26I GTCTC 3 cut(s) 427, 552, 604
Alw44I GTGCAC 1 cut(s) 636
Aor51HI AGCGCT 1 cut(s) 131
AoxI GGCC 1 cut(s) 36
ApaLI GTGCAC 1 cut(s) 636
ApeKI GCWGC 1 cut(s) 65
ApoI RAATTY 1 cut(s) 608
Asp700I GAANNNNTTC 1 cut(s) 588
AspLEI GCGC 2 cut(s) 132, 195
AsuHPI GGTGA 3 cut(s) 89, 532, 559
BaeGI GKGCMC 1 cut(s) 640
BbsI GAAGAC 2 cut(s) 222, 591
Bbv12I GWGCWC 1 cut(s) 640
BbvCI CCTCAGC 1 cut(s) 33
BbvI GCAGC 1 cut(s) 77
BccI CCATC 2 cut(s) 547, 608
BceAI ACGGC 1 cut(s) 75
BciVI GTATCC 1 cut(s) 345
BclI TGATCA 1 cut(s) 397
BcoDI GTCTC 3 cut(s) 427, 552, 604
BfaI CTAG 1 cut(s) 438
BfoI RGCGCY 1 cut(s) 133
BfuI GTATCC 1 cut(s) 345
BisI GCNGC 1 cut(s) 66
BlpI GCTNAGC 1 cut(s) 52
BlsI GCNGC 1 cut(s) 67
BmcAI AGTACT 1 cut(s) 548
BmsI GCATC 1 cut(s) 437
BpiI GAAGAC 2 cut(s) 222, 591
Bpu10I CCTNAGC 1 cut(s) 33
Bpu1102I GCTNAGC 1 cut(s) 52
BsaI GGTCTC 2 cut(s) 427, 552
BsaWI WCCGGW 1 cut(s) 9
Bse3DI GCAATG 1 cut(s) 457
BseGI GGATG 1 cut(s) 467
BseMI GCAATG 1 cut(s) 457
BseMII CTCAG 2 cut(s) 24, 66
BseRI GAGGAG 1 cut(s) 503
BseSI GKGCMC 1 cut(s) 640
BseXI GCAGC 1 cut(s) 77
Bsh1236I CGCG 1 cut(s) 195
BshFI GGCC 1 cut(s) 38
BsiHKAI GWGCWC 1 cut(s) 640
BsiSI CCGG 1 cut(s) 10
BsmAI GTCTC 3 cut(s) 427, 552, 604
BsnI GGCC 1 cut(s) 38
Bso31I GGTCTC 2 cut(s) 427, 552
Bsp1286I GDGCHC 1 cut(s) 640
Bsp143I GATC 4 cut(s) 6, 85, 397, 564
Bsp1720I GCTNAGC 1 cut(s) 52
BspACI CCGC 1 cut(s) 195
BspANI GGCC 1 cut(s) 38
BspCNI CTCAG 2 cut(s) 25, 65
BspFNI CGCG 1 cut(s) 195
BspTNI GGTCTC 2 cut(s) 427, 552
BsrDI GCAATG 1 cut(s) 457
BssMI GATC 4 cut(s) 6, 85, 397, 564
Bst4CI ACNGT 2 cut(s) 43, 392
BstC8I GCNNGC 2 cut(s) 114, 118
BstDEI CTNAG 3 cut(s) 33, 52, 276
BstF5I GGATG 1 cut(s) 467
BstFNI CGCG 1 cut(s) 195
BstH2I RGCGCY 1 cut(s) 133
BstHHI GCGC 2 cut(s) 132, 195
BstKTI GATC 4 cut(s) 9, 88, 400, 567
BstMAI GTCTC 3 cut(s) 427, 552, 604
BstMBI GATC 4 cut(s) 6, 85, 397, 564
BstMWI GCNNNNNNNGC 2 cut(s) 62, 410
BstNSI RCATGY 1 cut(s) 649
BstSLI GKGCMC 1 cut(s) 640
BstUI CGCG 1 cut(s) 195
BstV1I GCAGC 1 cut(s) 77
BstV2I GAAGAC 2 cut(s) 222, 591
BstX2I RGATCY 1 cut(s) 6
BstYI RGATCY 1 cut(s) 6
BsuI GTATCC 1 cut(s) 345
BsuRI GGCC 1 cut(s) 38
BtgZI GCGATG 2 cut(s) 30, 90
BtsCI GGATG 1 cut(s) 467
BtsIMutI CAGTG 2 cut(s) 39, 511
Cac8I GCNNGC 2 cut(s) 114, 118
CfoI GCGC 2 cut(s) 132, 195
Csp6I GTAC 1 cut(s) 547
CviAII CATG 4 cut(s) 101, 354, 401, 646
CviJI RGCY 7 cut(s) 32, 38, 56, 68, 112, 313, 413
CviKI_1 RGCY 7 cut(s) 32, 38, 56, 68, 112, 313, 413
CviQI GTAC 1 cut(s) 547
DdeI CTNAG 3 cut(s) 33, 52, 276
DpnI GATC 4 cut(s) 8, 87, 399, 566
DpnII GATC 4 cut(s) 6, 85, 397, 564
DraIII CACNNNGTG 1 cut(s) 573
Eco31I GGTCTC 2 cut(s) 427, 552
Eco32I GATATC 1 cut(s) 178
Eco47III AGCGCT 1 cut(s) 131
EcoRV GATATC 1 cut(s) 178
FaeI CATG 4 cut(s) 104, 357, 404, 649
FaiI YATR 9 cut(s) 102, 355, 377, 402, 478, 480, 539, 624, 647
FalI AAGNNNNNCTT 5 cut(s) 119, 151, 576, 608, 625
FatI CATG 4 cut(s) 100, 353, 400, 645
FbaI TGATCA 1 cut(s) 397
Fnu4HI GCNGC 1 cut(s) 66
FokI GGATG 1 cut(s) 454
Fsp4HI GCNGC 1 cut(s) 66
FspBI CTAG 1 cut(s) 438
GlaI GCGC 2 cut(s) 131, 194
GluI GCNGC 1 cut(s) 66
HaeII RGCGCY 1 cut(s) 133
HaeIII GGCC 1 cut(s) 38
HapII CCGG 1 cut(s) 10
HhaI GCGC 2 cut(s) 132, 195
Hin1II CATG 4 cut(s) 104, 357, 404, 649
Hin6I GCGC 2 cut(s) 130, 193
HinP1I GCGC 2 cut(s) 130, 193
HindIII AAGCTT 1 cut(s) 110
HinfI GANTC 3 cut(s) 161, 198, 323
HpaII CCGG 1 cut(s) 10
HphI GGTGA 3 cut(s) 89, 532, 559
Hpy166II GTNNAC 2 cut(s) 97, 638
Hpy188I TCNGA 2 cut(s) 370, 544
Hpy188III TCNNGA 3 cut(s) 185, 212, 593
Hpy8I GTNNAC 2 cut(s) 97, 638
HpyAV CCTTC 2 cut(s) 373, 599
HpyCH4III ACNGT 2 cut(s) 43, 392
HpyCH4V TGCA 7 cut(s) 104, 116, 156, 234, 404, 450, 638
HpyF10VI GCNNNNNNNGC 2 cut(s) 62, 410
HpyF3I CTNAG 3 cut(s) 33, 52, 276
Hsp92II CATG 4 cut(s) 104, 357, 404, 649
HspAI GCGC 2 cut(s) 130, 193
Ksp22I TGATCA 1 cut(s) 397
Kzo9I GATC 4 cut(s) 6, 85, 397, 564
LpnPI CCDG 6 cut(s) 23, 170, 220, 274, 288, 575
Lsp1109I GCAGC 1 cut(s) 77
LweI GCATC 1 cut(s) 437
MaeI CTAG 1 cut(s) 438
MaeIII GTNAC 3 cut(s) 23, 242, 506
MalI GATC 4 cut(s) 8, 87, 399, 566
MboI GATC 4 cut(s) 6, 85, 397, 564
MboII GAAGA 7 cut(s) 16, 131, 193, 196, 227, 287, 596
MflI RGATCY 1 cut(s) 6
MhlI GDGCHC 1 cut(s) 640
MluCI AATT 4 cut(s) 225, 461, 493, 608
MlyI GAGTC 1 cut(s) 155
MmeI TCCRAC 3 cut(s) 169, 362, 610
MnlI CCTC 6 cut(s) 28, 177, 424, 481, 481, 619
MroXI GAANNNNTTC 1 cut(s) 588
MslI CAYNNNNRTG 1 cut(s) 352
MspA1I CMGCKG 1 cut(s) 56
MspI CCGG 1 cut(s) 10
MvnI CGCG 1 cut(s) 195
MwoI GCNNNNNNNGC 2 cut(s) 62, 410
NdeII GATC 4 cut(s) 6, 85, 397, 564
NlaIII CATG 4 cut(s) 104, 357, 404, 649
NmuCI GTSAC 3 cut(s) 23, 242, 506
NspI RCATGY 1 cut(s) 649
PciI ACATGT 1 cut(s) 645
PdmI GAANNNNTTC 1 cut(s) 588
PfeI GAWTC 2 cut(s) 198, 323
PflFI GACNNNGTC 1 cut(s) 377
PkrI GCNGC 1 cut(s) 67
PleI GAGTC 1 cut(s) 155
PpsI GAGTC 1 cut(s) 155
PscI ACATGT 1 cut(s) 645
PsuI RGATCY 1 cut(s) 6
PsyI GACNNNGTC 1 cut(s) 377
PvuII CAGCTG 1 cut(s) 56
RsaI GTAC 1 cut(s) 548
RsaNI GTAC 1 cut(s) 547
RseI CAYNNNNRTG 1 cut(s) 352
SatI GCNGC 1 cut(s) 66
Sau3AI GATC 4 cut(s) 6, 85, 397, 564
ScaI AGTACT 1 cut(s) 548
SchI GAGTC 1 cut(s) 155
SduI GDGCHC 1 cut(s) 640
SfaNI GCATC 1 cut(s) 437
SmiMI CAYNNNNRTG 1 cut(s) 352
Sse9I AATT 4 cut(s) 225, 461, 493, 608
SsiI CCGC 1 cut(s) 195
SspMI CTAG 1 cut(s) 438
TaaI ACNGT 2 cut(s) 43, 392
TasI AATT 4 cut(s) 225, 461, 493, 608
TatI WGTACW 1 cut(s) 546
TfiI GAWTC 2 cut(s) 198, 323
TscAI CASTG 2 cut(s) 46, 511
TseFI GTSAC 3 cut(s) 23, 242, 506
TseI GCWGC 1 cut(s) 65
Tsp45I GTSAC 3 cut(s) 23, 242, 506
TspDTI ATGAA 5 cut(s) 17, 75, 282, 333, 468
TspRI CASTG 2 cut(s) 46, 511
Tth111I GACNNNGTC 1 cut(s) 377
VneI GTGCAC 1 cut(s) 636
XapI RAATTY 1 cut(s) 608
XceI RCATGY 1 cut(s) 649
XmnI GAANNNNTTC 1 cut(s) 588
XspI CTAG 1 cut(s) 438
ZrmI AGTACT 1 cut(s) 548
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.