Rw6G022050

BRIGHT, ARID (A/T-rich interaction domain) domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0001717
Physical Location & Seq
Reverse (-)
43728073 .. 43733126
5054 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G022050.1

Sequence Viewer

Length: 2013 bp
ATGGAGGAAATAGGAAAAGAAGAGGGGAAAAATATGGAGGAGGGTCTAGAAAACGAAACCCATGACCATGCACAACTTGAAGAGGGTCAAGAACCACCGAAACCCAACTCGGTCGATAGTGTAATAGTGGAGATGCAGAAGCTTATTGGTGACAGTGGTGTTGAAATGCCTGGTGACCTCGAGGGCCCGGTTGAGTTGGCTCCCACTGTCCTCAAAACCGCTGAAGATGCTGAAATTGTTACCGACACTAACAAAGAGCTGCAGGGCGATACTGGAAGTGATAAGCTTGTCAGTAATGTGGATTCTGATGTGCATCGTGAGAGTGAGGTGTCTTTGAAGGTTGAAAGTGATAAGCTTGTCAATAATGTGGACTCTGATGTGCATCGTGAGAGTGAGGTGTCTTTGAAGGTTGAAAGTGATAAGCTTGTCAATAATGTGGACTCTGATGTGCATCATGGGAGTGAGGTCTCTGTGAAGGTTGAAAGTGATAATCTTGTTGGTAATGTGGATTCTGATGTGCAACGTGAGGGTGAGGTCTGTCCGGAGAATGTAAGTGAAGAGAATGGTGAGAAAGGGGAAGAGCTGAAGGATGTTAAGGTCAGTGAAGCCATCGAATTAGATGCCAGTGCTGAGACTGATAATCTTGTTGGTAATGGGGATGGGGATTCGCACCACACAGCTCAGACTACCATGGACATTGAAAAGGAAGATAATGATGGTGAGGAAGGGAAAGCACTGAAGGATGAGGGGAGCATCAAGGCCAACCCCTCCAATGAACCGCATATGAATGCTGAAACTAATATTGTTGTCAGTCAGGTGGAGCCTGATAGGTGTGGTGATGGTGATGTTGCAAAGGAAAAACTGACGGATGGGGTGAGCAGCAAGGCTAACCCCTCCAGTGAACTGCTTGCAAGTGCTGAAACTGATAAGGTTGTTTGTAAAGGCGGTATGCCTCAAGATAATGAGTTATCAATGGAGACTGAATCCGAGTCTGATGACGACGATGAGAAAGGACATGCAGTAACTGGTGGGTTGAGCAGCAAAACAAAGTTCTCTCTACACCATGGCATAAAGGAGCACATTCAAAATCCAAGGCGAACCTTTCTCTTGGCTCCAGGTGCAGGAGGTGATGAGTCGGGGACTGAAGAGGAGCAAGCTGAATTCATGAAGGAGGTGGAGAATTTTTATAAAGAGAAGCACTTGGAATTCAAAGCGCCAAAGTTTTACAAAGAGGAATTGAATCTGCTCAAGTTATGGAGAGCTGTGATCAAACTTGGCGGCTATGAAAAGGTTACTTCATGCAAGTTGTGGCGGCAGGTTGGAGAATCATTTAATCCCCCAAAGACTTGTACTACTGTCTCTTGGACTTTTCGGATTTTCTACGAGAAGGCATTACTTGAGTTTGAAAAGCATAGATGGCATGGCAGTGAGCTTGCTCTTCCTGAACCTTCTAGAGTTGAGATTCGGGCTGATGGTAGTCAAACTTGTGGATCAGGCAGGACACTAAGGGATGCTGCAGCTCGTGCCATGCAGGGTTGGCACTCTCAACGCCTTTTTGGAAATGGCGAGGAGAAGCACTTGAGTACTATGCCAAAAAGCGACAAGCAGCTCAAGAGCTCTGGTTTGTTAAAGCGGAAAAAGCTATCTCCTGGGGACTGTGCTGCTCAGATTACTGACATGAAATCGACAAAGCCACGGTTAGATATGACGGTATTCGATATTGGACCGCCAGCAGATTGGGTCAAAATTAATGTGAAACGATTTAGCGACTGCTTTGAGGTATATGCCCTAGTTCCTGGACTTCTGCGTGAGGAGGTGCATGTTCAATCTGATCCAATTGGACGCTTGATTATTTCTGGTCAACCAATGCAACTGGACAATCCTTGGGGTGTCACACCCTTTAAGAAGGTTGTCAGCTTACCTTCGAGAATTGATCCACATCAGACATCTGCTGTAGTGACCTTGAATGGCCAGTTGTTTGTGCGGGTTCCGTTTGAACAGTCAGATTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ARID HSP20

Protein Analysis

670

Amino Acids

73.83

Weight (kDa)

4.75

Isoelectric Point (pI)

37.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ARID PF01388 385 - 469 3.3e-19 ARID/BRIGHT DNA binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1188
AbsI CCTCGAGG 1 cut(s) 179
Acc36I ACCTGC 1 cut(s) 1306
AccIII TCCGGA 1 cut(s) 541
AciI CCGC 8 cut(s) 219, 779, 945, 1278, 1312, 1633, 1727, 1984
AclWI GGATC 3 cut(s) 1498, 1826, 1928
AcoI YGGCCR 1 cut(s) 1969
AcsI RAATTY 3 cut(s) 1160, 1180, 1205
AcuI CTGAAG 4 cut(s) 243, 605, 758, 1164
AfaI GTAC 2 cut(s) 1351, 1585
AfiI CCNNNNNNNGG 1 cut(s) 1121
AjnI CCWGG 4 cut(s) 169, 1114, 1648, 1795
Alw21I GWGCWC 2 cut(s) 1080, 1619
Alw26I GTCTC 4 cut(s) 472, 626, 971, 1363
AlwI GGATC 3 cut(s) 1498, 1826, 1928
AlwNI CAGNNNCTG 1 cut(s) 1025
Ama87I CYCGRG 1 cut(s) 179
Aor13HI TCCGGA 1 cut(s) 541
AoxI GGCC 3 cut(s) 184, 759, 1969
ApaI GGGCCC 1 cut(s) 188
ApeKI GCWGC 7 cut(s) 259, 879, 1038, 1514, 1517, 1606, 1661
ApoI RAATTY 3 cut(s) 1160, 1180, 1205
AseI ATTAAT 1 cut(s) 1749
AspLEI GCGC 1 cut(s) 1216
AspS9I GGNCC 3 cut(s) 184, 185, 1724
AsuC2I CCSGG 1 cut(s) 188
AsuHPI GGTGA 9 cut(s) 161, 185, 542, 578, 731, 848, 854, 886, 1139
AvaI CYCGRG 1 cut(s) 179
AvaII GGWCC 1 cut(s) 1724
BaeGI GKGCMC 1 cut(s) 188
BalI TGGCCA 1 cut(s) 1971
BanII GRGCYC 2 cut(s) 188, 1619
BauI CACGAG 1 cut(s) 1521
Bbv12I GWGCWC 2 cut(s) 1080, 1619
BbvI GCAGC 7 cut(s) 246, 891, 1050, 1501, 1529, 1618, 1648
BccI CCATC 7 cut(s) 617, 653, 710, 833, 863, 1410, 1466
BcgI CGANNNNNNTGC 2 cut(s) 602, 636
BciT130I CCWGG 4 cut(s) 171, 1116, 1650, 1797
BclI TGATCA 1 cut(s) 1266
BcnI CCSGG 1 cut(s) 188
BcoDI GTCTC 4 cut(s) 472, 626, 971, 1363
BfaI CTAG 3 cut(s) 47, 1452, 1790
BfmI CTRYAG 3 cut(s) 260, 1515, 1953
BfoI RGCGCY 1 cut(s) 1217
BfuAI ACCTGC 1 cut(s) 1306
BisI GCNGC 9 cut(s) 260, 880, 1039, 1279, 1313, 1515, 1518, 1607, 1662
BlsI GCNGC 9 cut(s) 261, 881, 1040, 1280, 1314, 1516, 1519, 1608, 1663
BmcAI AGTACT 1 cut(s) 1585
Bme1390I CCNGG 5 cut(s) 171, 188, 1116, 1650, 1797
Bme18I GGWCC 1 cut(s) 1724
BmeT110I CYCGRG 1 cut(s) 179
BmgT120I GGNCC 3 cut(s) 184, 185, 1724
BmiI GGNNCC 5 cut(s) 186, 201, 822, 1113, 1989
BmrFI CCNGG 5 cut(s) 171, 188, 1116, 1650, 1797
BmsI GCATC 8 cut(s) 123, 217, 322, 391, 460, 610, 762, 1501
BpmI CTGGAG 2 cut(s) 880, 1098
BpuEI CTTGAG 5 cut(s) 939, 1232, 1418, 1595, 1600
BpuMI CCSGG 1 cut(s) 188
BsaBI GATNNNNATC 4 cut(s) 312, 381, 450, 1938
BsaI GGTCTC 1 cut(s) 472
BsaJI CCNNGG 6 cut(s) 690, 1063, 1091, 1649, 1694, 1883
BsaWI WCCGGW 1 cut(s) 541
Bsc4I CCNNNNNNNGG 1 cut(s) 1121
Bse1I ACTGG 6 cut(s) 277, 624, 897, 1030, 1878, 1972
Bse8I GATNNNNATC 4 cut(s) 312, 381, 450, 1938
BseAI TCCGGA 1 cut(s) 541
BseBI CCWGG 4 cut(s) 171, 1116, 1650, 1797
BseDI CCNNGG 6 cut(s) 690, 1063, 1091, 1649, 1694, 1883
BseGI GGATG 5 cut(s) 595, 664, 748, 874, 1516
BseJI GATNNNNATC 4 cut(s) 312, 381, 450, 1938
BseLI CCNNNNNNNGG 1 cut(s) 1121
BseMII CTCAG 3 cut(s) 621, 695, 1679
BseNI ACTGG 6 cut(s) 277, 624, 897, 1030, 1878, 1972
BseRI GAGGAG 4 cut(s) 53, 1163, 1583, 1826
BseSI GKGCMC 1 cut(s) 188
BseXI GCAGC 7 cut(s) 246, 891, 1050, 1501, 1529, 1618, 1648
BsgI GTGCAG 1 cut(s) 1140
Bsh1285I CGRYCG 1 cut(s) 114
BshFI GGCC 3 cut(s) 186, 761, 1971
BsiEI CGRYCG 1 cut(s) 114
BsiHKAI GWGCWC 2 cut(s) 1080, 1619
BsiHKCI CYCGRG 1 cut(s) 179
BsiSI CCGG 2 cut(s) 188, 542
BslFI GGGAC 2 cut(s) 1153, 1667
BslI CCNNNNNNNGG 1 cut(s) 1121
BsmAI GTCTC 4 cut(s) 472, 626, 971, 1363
BsmFI GGGAC 2 cut(s) 1153, 1667
BsmI GAATGC 1 cut(s) 793
BsnI GGCC 3 cut(s) 186, 761, 1971
Bso31I GGTCTC 1 cut(s) 472
BsoBI CYCGRG 1 cut(s) 179
Bsp120I GGGCCC 1 cut(s) 184
Bsp1286I GDGCHC 3 cut(s) 188, 1080, 1619
Bsp13I TCCGGA 1 cut(s) 541
Bsp143I GATC 4 cut(s) 1266, 1490, 1831, 1933
Bsp19I CCATGG 2 cut(s) 690, 1063
BspACI CCGC 8 cut(s) 219, 779, 945, 1278, 1312, 1633, 1727, 1984
BspANI GGCC 3 cut(s) 186, 761, 1971
BspCNI CTCAG 3 cut(s) 622, 694, 1678
BspEI TCCGGA 1 cut(s) 541
BspHI TCATGA 1 cut(s) 1164
BspLI GGNNCC 5 cut(s) 186, 201, 822, 1113, 1989
BspMAI CTGCAG 2 cut(s) 264, 1519
BspMI ACCTGC 1 cut(s) 1306
BspPI GGATC 3 cut(s) 1498, 1826, 1928
BspQI GCTCTTC 2 cut(s) 573, 1443
BspTNI GGTCTC 1 cut(s) 472
BsrI ACTGG 6 cut(s) 277, 624, 897, 1030, 1878, 1972
BssECI CCNNGG 6 cut(s) 690, 1063, 1091, 1649, 1694, 1883
BssMI GATC 4 cut(s) 1266, 1490, 1831, 1933
BssSI CACGAG 1 cut(s) 1521
BssT1I CCWWGG 4 cut(s) 690, 1063, 1091, 1883
Bst2BI CACGAG 1 cut(s) 1521
Bst2UI CCWGG 4 cut(s) 171, 1116, 1650, 1797
Bst4CI ACNGT 7 cut(s) 155, 208, 1357, 1658, 1698, 1711, 2001
Bst6I CTCTTC 6 cut(s) 15, 75, 552, 573, 1140, 1443
BstAPI GCANNNNNTGC 1 cut(s) 1523
BstC8I GCNNGC 4 cut(s) 909, 1155, 1434, 1731
BstDEI CTNAG 4 cut(s) 630, 681, 1505, 1665
BstDSI CCRYGG 3 cut(s) 690, 1063, 1694
BstEII GGTNACC 1 cut(s) 173
BstF5I GGATG 5 cut(s) 595, 664, 748, 874, 1516
BstH2I RGCGCY 1 cut(s) 1217
BstHHI GCGC 1 cut(s) 1216
BstKTI GATC 4 cut(s) 1269, 1493, 1834, 1936
BstMAI GTCTC 4 cut(s) 472, 626, 971, 1363
BstMBI GATC 4 cut(s) 1266, 1490, 1831, 1933
BstMCI CGRYCG 1 cut(s) 114
BstMWI GCNNNNNNNGC 6 cut(s) 227, 1118, 1417, 1523, 1537, 1639
BstNI CCWGG 4 cut(s) 171, 1116, 1650, 1797
BstNSI RCATGY 2 cut(s) 1019, 1823
BstPI GGTNACC 1 cut(s) 173
BstSCI CCNGG 5 cut(s) 169, 186, 1114, 1648, 1795
BstSFI CTRYAG 3 cut(s) 260, 1515, 1953
BstSLI GKGCMC 1 cut(s) 188
BstV1I GCAGC 7 cut(s) 246, 891, 1050, 1501, 1529, 1618, 1648
BstXI CCANNNNNNTGG 1 cut(s) 1737
BsuRI GGCC 3 cut(s) 186, 761, 1971
BtgI CCRYGG 3 cut(s) 690, 1063, 1694
BtsCI GGATG 5 cut(s) 595, 664, 748, 874, 1516
BtsI GCAGTG 1 cut(s) 1432
BtsIMutI CAGTG 7 cut(s) 160, 204, 607, 631, 734, 904, 1432
BveI ACCTGC 1 cut(s) 1306
Cac8I GCNNGC 4 cut(s) 909, 1155, 1434, 1731
CaiI CAGNNNCTG 1 cut(s) 1025
CciI TCATGA 1 cut(s) 1164
CfoI GCGC 1 cut(s) 1216
Cfr13I GGNCC 3 cut(s) 184, 185, 1724
CseI GACGC 1 cut(s) 1851
Csp6I GTAC 2 cut(s) 1350, 1584
CviQI GTAC 2 cut(s) 1350, 1584
DdeI CTNAG 4 cut(s) 630, 681, 1505, 1665
DpnI GATC 4 cut(s) 1268, 1492, 1833, 1935
DpnII GATC 4 cut(s) 1266, 1490, 1831, 1933
EaeI YGGCCR 1 cut(s) 1969
Eam1104I CTCTTC 6 cut(s) 15, 75, 552, 573, 1140, 1443
EarI CTCTTC 6 cut(s) 15, 75, 552, 573, 1140, 1443
Ecl136II GAGCTC 1 cut(s) 1617
Eco130I CCWWGG 4 cut(s) 690, 1063, 1091, 1883
Eco24I GRGCYC 2 cut(s) 188, 1619
Eco31I GGTCTC 1 cut(s) 472
Eco47I GGWCC 1 cut(s) 1724
Eco53kI GAGCTC 1 cut(s) 1617
Eco57I CTGAAG 4 cut(s) 243, 605, 758, 1164
Eco88I CYCGRG 1 cut(s) 179
Eco91I GGTNACC 1 cut(s) 173
EcoICRI GAGCTC 1 cut(s) 1617
EcoO109I RGGNCCY 1 cut(s) 184
EcoO65I GGTNACC 1 cut(s) 173
EcoRI GAATTC 2 cut(s) 1160, 1205
EcoRII CCWGG 4 cut(s) 169, 1114, 1648, 1795
EcoT14I CCWWGG 4 cut(s) 690, 1063, 1091, 1883
EcoT38I GRGCYC 2 cut(s) 188, 1619
ErhI CCWWGG 4 cut(s) 690, 1063, 1091, 1883
FaqI GGGAC 2 cut(s) 1153, 1667
FauI CCCGC 1 cut(s) 1977
FauNDI CATATG 1 cut(s) 783
FbaI TGATCA 1 cut(s) 1266
Fnu4HI GCNGC 9 cut(s) 260, 880, 1039, 1279, 1313, 1515, 1518, 1607, 1662
FokI GGATG 5 cut(s) 602, 671, 755, 881, 1523
FriOI GRGCYC 2 cut(s) 188, 1619
Fsp4HI GCNGC 9 cut(s) 260, 880, 1039, 1279, 1313, 1515, 1518, 1607, 1662
FspBI CTAG 3 cut(s) 47, 1452, 1790
GlaI GCGC 1 cut(s) 1215
GluI GCNGC 9 cut(s) 260, 880, 1039, 1279, 1313, 1515, 1518, 1607, 1662
GsuI CTGGAG 2 cut(s) 880, 1098
HaeII RGCGCY 1 cut(s) 1217
HaeIII GGCC 3 cut(s) 186, 761, 1971
HapII CCGG 2 cut(s) 188, 542
HgaI GACGC 1 cut(s) 1851
HhaI GCGC 1 cut(s) 1216
Hin6I GCGC 1 cut(s) 1214
HinP1I GCGC 1 cut(s) 1214
HincII GTYRAC 1 cut(s) 1862
HindII GTYRAC 1 cut(s) 1862
HindIII AAGCTT 4 cut(s) 140, 284, 353, 422
HpaII CCGG 2 cut(s) 188, 542
HphI GGTGA 9 cut(s) 161, 185, 542, 578, 731, 848, 854, 886, 1139
Hpy166II GTNNAC 4 cut(s) 370, 439, 902, 1862
Hpy8I GTNNAC 4 cut(s) 370, 439, 902, 1862
Hpy99I CGWCG 1 cut(s) 1004
HpyCH4III ACNGT 7 cut(s) 155, 208, 1357, 1658, 1698, 1711, 2001
HpyCH4IV ACGT 1 cut(s) 523
HpyF10VI GCNNNNNNNGC 6 cut(s) 227, 1118, 1417, 1523, 1537, 1639
HpyF3I CTNAG 4 cut(s) 630, 681, 1505, 1665
HpySE526I ACGT 1 cut(s) 523
HspAI GCGC 1 cut(s) 1214
Kpn2I TCCGGA 1 cut(s) 541
Ksp22I TGATCA 1 cut(s) 1266
Kzo9I GATC 4 cut(s) 1266, 1490, 1831, 1933
LguI GCTCTTC 2 cut(s) 573, 1443
LmnI GCTCC 6 cut(s) 205, 750, 820, 1075, 1117, 1150
Lsp1109I GCAGC 7 cut(s) 246, 891, 1050, 1501, 1529, 1618, 1648
LweI GCATC 8 cut(s) 123, 217, 322, 391, 460, 610, 762, 1501
MaeI CTAG 3 cut(s) 47, 1452, 1790
MaeII ACGT 1 cut(s) 523
MaeIII GTNAC 7 cut(s) 149, 173, 238, 1021, 1291, 1891, 1957
MalI GATC 4 cut(s) 1268, 1492, 1833, 1935
MboI GATC 4 cut(s) 1266, 1490, 1831, 1933
MboII GAAGA 8 cut(s) 32, 92, 236, 569, 590, 719, 1157, 1430
MfeI CAATTG 1 cut(s) 1836
MhlI GDGCHC 3 cut(s) 188, 1080, 1619
MlsI TGGCCA 1 cut(s) 1971
MluCI AATT 9 cut(s) 234, 614, 1160, 1180, 1205, 1235, 1746, 1836, 1929
MluNI TGGCCA 1 cut(s) 1971
MlyI GAGTC 4 cut(s) 365, 434, 998, 1142
MmeI TCCRAC 1 cut(s) 1300
Mox20I TGGCCA 1 cut(s) 1971
MroI TCCGGA 1 cut(s) 541
MscI TGGCCA 1 cut(s) 1971
MseI TTAA 6 cut(s) 594, 1332, 1628, 1749, 1902, 2011
MslI CAYNNNNRTG 4 cut(s) 66, 459, 786, 1425
Msp20I TGGCCA 1 cut(s) 1971
MspA1I CMGCKG 1 cut(s) 221
MspI CCGG 2 cut(s) 188, 542
MspR9I CCNGG 5 cut(s) 171, 188, 1116, 1650, 1797
MunI CAATTG 1 cut(s) 1836
Mva1269I GAATGC 1 cut(s) 793
MvaI CCWGG 4 cut(s) 171, 1116, 1650, 1797
MwoI GCNNNNNNNGC 6 cut(s) 227, 1118, 1417, 1523, 1537, 1639
NciI CCSGG 1 cut(s) 188
NcoI CCATGG 2 cut(s) 690, 1063
NdeI CATATG 1 cut(s) 783
NdeII GATC 4 cut(s) 1266, 1490, 1831, 1933
NlaIV GGNNCC 5 cut(s) 186, 201, 822, 1113, 1989
NmuCI GTSAC 4 cut(s) 149, 173, 1891, 1957
NspI RCATGY 2 cut(s) 1019, 1823
PaeR7I CTCGAG 1 cut(s) 179
PagI TCATGA 1 cut(s) 1164
PciSI GCTCTTC 2 cut(s) 573, 1443
PctI GAATGC 1 cut(s) 793
PfeI GAWTC 7 cut(s) 302, 509, 665, 983, 1240, 1325, 1462
PfoI TCCNGGA 1 cut(s) 1795
PkrI GCNGC 9 cut(s) 261, 881, 1040, 1280, 1314, 1516, 1519, 1608, 1663
PleI GAGTC 4 cut(s) 365, 434, 997, 1141
PpsI GAGTC 4 cut(s) 365, 434, 997, 1141
PshBI ATTAAT 1 cut(s) 1749
PsiI TTATAA 1 cut(s) 1188
Psp124BI GAGCTC 1 cut(s) 1619
Psp6I CCWGG 4 cut(s) 169, 1114, 1648, 1795
PspEI GGTNACC 1 cut(s) 173
PspGI CCWGG 4 cut(s) 169, 1114, 1648, 1795
PspN4I GGNNCC 5 cut(s) 186, 201, 822, 1113, 1989
PspOMI GGGCCC 1 cut(s) 184
PspPI GGNCC 3 cut(s) 184, 185, 1724
PspXI VCTCGAGB 1 cut(s) 179
PstI CTGCAG 2 cut(s) 264, 1519
PstNI CAGNNNCTG 1 cut(s) 1025
RsaI GTAC 2 cut(s) 1351, 1585
RsaNI GTAC 2 cut(s) 1350, 1584
RseI CAYNNNNRTG 4 cut(s) 66, 459, 786, 1425
SacI GAGCTC 1 cut(s) 1619
SapI GCTCTTC 2 cut(s) 573, 1443
SaqAI TTAA 6 cut(s) 594, 1332, 1628, 1749, 1902, 2011
SatI GCNGC 9 cut(s) 260, 880, 1039, 1279, 1313, 1515, 1518, 1607, 1662
Sau3AI GATC 4 cut(s) 1266, 1490, 1831, 1933
Sau96I GGNCC 3 cut(s) 184, 185, 1724
ScaI AGTACT 1 cut(s) 1585
SchI GAGTC 4 cut(s) 365, 434, 998, 1142
ScrFI CCNGG 5 cut(s) 171, 188, 1116, 1650, 1797
SduI GDGCHC 3 cut(s) 188, 1080, 1619
SfaNI GCATC 8 cut(s) 123, 217, 322, 391, 460, 610, 762, 1501
SfcI CTRYAG 3 cut(s) 260, 1515, 1953
Sfr274I CTCGAG 1 cut(s) 179
SinI GGWCC 1 cut(s) 1724
SlaI CTCGAG 1 cut(s) 179
SmiMI CAYNNNNRTG 4 cut(s) 66, 459, 786, 1425
SmlI CTYRAG 6 cut(s) 179, 954, 1247, 1397, 1579, 1610
SmoI CTYRAG 6 cut(s) 179, 954, 1247, 1397, 1579, 1610
Sse9I AATT 9 cut(s) 234, 614, 1160, 1180, 1205, 1235, 1746, 1836, 1929
SsiI CCGC 8 cut(s) 219, 779, 945, 1278, 1312, 1633, 1727, 1984
SspI AATATT 1 cut(s) 802
SspMI CTAG 3 cut(s) 47, 1452, 1790
SstI GAGCTC 1 cut(s) 1619
StyD4I CCNGG 5 cut(s) 169, 186, 1114, 1648, 1795
StyI CCWWGG 4 cut(s) 690, 1063, 1091, 1883
TaaI ACNGT 7 cut(s) 155, 208, 1357, 1658, 1698, 1711, 2001
TaiI ACGT 1 cut(s) 526
TaqI TCGA 6 cut(s) 114, 180, 612, 1685, 1716, 1925
TaqII GACCGA 1 cut(s) 100
TasI AATT 9 cut(s) 234, 614, 1160, 1180, 1205, 1235, 1746, 1836, 1929
TatI WGTACW 2 cut(s) 1349, 1583
TauI GCSGC 2 cut(s) 1281, 1315
TfiI GAWTC 7 cut(s) 302, 509, 665, 983, 1240, 1325, 1462
Tru1I TTAA 6 cut(s) 594, 1332, 1628, 1749, 1902, 2011
Tru9I TTAA 6 cut(s) 594, 1332, 1628, 1749, 1902, 2011
TscAI CASTG 7 cut(s) 160, 211, 607, 631, 741, 904, 1432
TseFI GTSAC 4 cut(s) 149, 173, 1891, 1957
TseI GCWGC 7 cut(s) 259, 879, 1038, 1514, 1517, 1606, 1661
Tsp45I GTSAC 4 cut(s) 149, 173, 1891, 1957
TspDTI ATGAA 7 cut(s) 789, 800, 1153, 1181, 1287, 1299, 1694
TspGWI ACGGA 2 cut(s) 881, 1980
TspRI CASTG 7 cut(s) 160, 211, 607, 631, 741, 904, 1432
VpaK11BI GGWCC 1 cut(s) 1724
VspI ATTAAT 1 cut(s) 1749
XapI RAATTY 3 cut(s) 1160, 1180, 1205
XbaI TCTAGA 2 cut(s) 46, 1451
XceI RCATGY 2 cut(s) 1019, 1823
XhoI CTCGAG 1 cut(s) 179
XspI CTAG 3 cut(s) 47, 1452, 1790
ZrmI AGTACT 1 cut(s) 1585
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.