FvH4_5g29710

AT-rich interactive domain-containing protein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
Physical Location & Seq
Reverse (-)
20640508 .. 20649572
9065 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g29710.t2

Sequence Viewer

Length: 1203 bp
ATGGAGGGGAAGGAAAAGCTGGGCAAAGATCTGGAGAATGGTTCTGATGCCAAAGAGGAACCTACTGGGCCCAAGCCACCTCAAGCAGAAACCGATGCCGGCAGGAATCCGGGTGATGACCAAATTATGAGGGACACGTTTGAGGATCACATGGCTATTGATGAGCTGAAGGATGGTGATGTCAAAGATAATGACCCAATGCTTACTGAGGTGAGTGTAGGAAGAAAGGCCAATGGCAGTAGTGCCAGAGTCGCAAACAAACTCAAAACTGTTGATAAGCTTGTGGGGGAGTCGAAGAGTTGGTTGTCTGATTCCGAGGGTGAAGATTCGGAGGATGGGACACCATTGCAGCAGGCAGCGTTTATGAGGGAGCTCGAGAGTTTCCATAAGGAGAGGTCCTTGGAATTTAAGGCCCCAAAGTTTTATGGAGAACCACTTAATTGCCTCAAGTTATGGAGAGCTGTTATTAAAGCTGGTGGTTATGATGTGGTGACAACATCAAAGTTATGGCGGCAAGTAGGAGAGTCCTTTCATCCCCCCAAGACATGCACAACTGTATCTTGGACATTCCGCATATTTTATGAGAAGGCACTTTTGGAATATGAAAAGCATAAGAGGAAAACTGGGGAAATTCAGACAGCCATTGCATCACTCACTCAGTGTACAACTCCTGTGAAGGAGGCAAGTAGTCATCAAGCACCTGGATCAGGTAGGGCACGGAGAGATGCTGCAGCGCGTGCTATGCAGGGTTGGCATGCGCAGCGTCTTGTTGGATATGGTGAGATTGCTGAGCCAATTGTTAAGGACAAGAACTTGAGTACTACCCCAAAGCGTGAAAAGAATCTTAAAAGCATTGGTTCTATTAAACACAAAACACCAACTTTCTTGGATCATGCTGAGAAAACTGCATTCGTTGAGGCAGATAAGCAGGTAGTCACAAATATTGTGGATCTTGGACCTCCAGCTGATTGGGTGAAGATCAGTGTGCGAGAAACTAAAGATTGCTTTGAGGTATATGCTTTGGTACCAGGTCTTCTGCGTGAGGAGGTGAGTCCTTGTGAAACCATCTTCGTTTTACCTTTATACTCACCTCTCCTTTGTGTTGATTTATACAGGAATTATGTCAATTTCTCCCCTGAACTTGGTGTGCCAATTTATCCTTGCACAGTTGCCGTGGTTAATTTGCACCCAAAAGTATATTGA

Protein Analysis

401

Amino Acids

44.57

Weight (kDa)

6.07

Isoelectric Point (pI)

33.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ARID PF01388 118 - 202 1.5e-20 ARID/BRIGHT DNA binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 759
Acc36I ACCTGC 1 cut(s) 919
Acc65I GGTACC 1 cut(s) 1024
AccB1I GGYRCC 1 cut(s) 1024
AccII CGCG 1 cut(s) 736
AciI CCGC 2 cut(s) 511, 571
AclWI GGATC 4 cut(s) 153, 712, 897, 957
AcsI RAATTY 2 cut(s) 404, 630
AcuI CTGAAG 1 cut(s) 188
AdeI CACNNNGTG 1 cut(s) 660
AfaI GTAC 3 cut(s) 664, 820, 1026
AfiI CCNNNNNNNGG 2 cut(s) 707, 1142
AflIII ACRYGT 1 cut(s) 135
AjnI CCWGG 2 cut(s) 700, 1027
AjuI GAANNNNNNNTTGG 2 cut(s) 578, 610
AluBI AGCT 7 cut(s) 19, 166, 280, 373, 461, 473, 965
AluI AGCT 7 cut(s) 19, 166, 280, 373, 461, 473, 965
Alw21I GWGCWC 1 cut(s) 375
AlwI GGATC 4 cut(s) 153, 712, 897, 957
Ama87I CYCGRG 1 cut(s) 374
AoxI GGCC 3 cut(s) 68, 228, 411
ApaI GGGCCC 1 cut(s) 72
ApeKI GCWGC 5 cut(s) 349, 356, 728, 731, 760
ApoI RAATTY 2 cut(s) 404, 630
Asp718I GGTACC 1 cut(s) 1024
AspLEI GCGC 2 cut(s) 736, 760
AspS9I GGNCC 5 cut(s) 68, 69, 396, 412, 956
AsuC2I CCSGG 1 cut(s) 111
AsuHPI GGTGA 9 cut(s) 125, 188, 223, 332, 502, 791, 985, 1060, 1080
AvaI CYCGRG 1 cut(s) 374
AvaII GGWCC 2 cut(s) 396, 956
BaeGI GKGCMC 2 cut(s) 72, 718
BaeI ACNNNNGTAYC 2 cut(s) 540, 573
BanI GGYRCC 1 cut(s) 1024
BanII GRGCYC 2 cut(s) 72, 375
BarI GAAGNNNNNNTAC 2 cut(s) 1017, 1049
BbsI GAAGAC 1 cut(s) 1025
Bbv12I GWGCWC 1 cut(s) 375
BbvI GCAGC 5 cut(s) 361, 368, 715, 743, 772
BccI CCATC 3 cut(s) 167, 329, 1073
BceAI ACGGC 1 cut(s) 1157
BciT130I CCWGG 2 cut(s) 702, 1029
BcnI CCSGG 1 cut(s) 111
BfmI CTRYAG 1 cut(s) 729
BfuAI ACCTGC 1 cut(s) 919
BglII AGATCT 1 cut(s) 28
BisI GCNGC 6 cut(s) 350, 357, 512, 729, 732, 761
BlpI GCTNAGC 1 cut(s) 789
BlsI GCNGC 6 cut(s) 351, 358, 513, 730, 733, 762
BmcAI AGTACT 1 cut(s) 820
Bme1390I CCNGG 3 cut(s) 111, 702, 1029
Bme18I GGWCC 2 cut(s) 396, 956
BmeT110I CYCGRG 1 cut(s) 374
BmgT120I GGNCC 5 cut(s) 68, 69, 396, 412, 956
BmiI GGNNCC 4 cut(s) 60, 70, 414, 1026
BmrFI CCNGG 3 cut(s) 111, 702, 1029
BmrI ACTGGG 2 cut(s) 75, 633
BmsI GCATC 4 cut(s) 37, 85, 656, 715
BmuI ACTGGG 2 cut(s) 75, 633
BpiI GAAGAC 1 cut(s) 1025
BpmI CTGGAG 2 cut(s) 53, 945
Bpu1102I GCTNAGC 1 cut(s) 789
BpuEI CTTGAG 3 cut(s) 66, 431, 835
BpuMI CCSGG 1 cut(s) 111
BsaJI CCNNGG 3 cut(s) 315, 399, 1173
Bsc4I CCNNNNNNNGG 2 cut(s) 707, 1142
Bse118I RCCGGY 1 cut(s) 98
Bse1I ACTGG 2 cut(s) 70, 628
Bse3DI GCAATG 2 cut(s) 344, 642
BseBI CCWGG 2 cut(s) 702, 1029
BseDI CCNNGG 3 cut(s) 315, 399, 1173
BseGI GGATG 3 cut(s) 178, 340, 532
BseLI CCNNNNNNNGG 2 cut(s) 707, 1142
BseMI GCAATG 2 cut(s) 344, 642
BseMII CTCAG 4 cut(s) 198, 671, 780, 888
BseNI ACTGG 2 cut(s) 70, 628
BseRI GAGGAG 1 cut(s) 1058
BseSI GKGCMC 2 cut(s) 72, 718
BseXI GCAGC 5 cut(s) 361, 368, 715, 743, 772
BseYI CCCAGC 1 cut(s) 19
Bsh1236I CGCG 1 cut(s) 736
BshFI GGCC 3 cut(s) 70, 230, 413
BshNI GGYRCC 1 cut(s) 1024
BsiHKAI GWGCWC 1 cut(s) 375
BsiHKCI CYCGRG 1 cut(s) 374
BsiSI CCGG 2 cut(s) 99, 110
BslFI GGGAC 2 cut(s) 146, 352
BslI CCNNNNNNNGG 2 cut(s) 707, 1142
BsmFI GGGAC 2 cut(s) 146, 352
BsmI GAATGC 1 cut(s) 908
BsnI GGCC 3 cut(s) 70, 230, 413
BsoBI CYCGRG 1 cut(s) 374
Bsp120I GGGCCC 1 cut(s) 68
Bsp1286I GDGCHC 3 cut(s) 72, 375, 718
Bsp1407I TGTACA 1 cut(s) 662
Bsp143I GATC 6 cut(s) 28, 145, 704, 889, 949, 978
Bsp1720I GCTNAGC 1 cut(s) 789
BspACI CCGC 2 cut(s) 511, 571
BspANI GGCC 3 cut(s) 70, 230, 413
BspCNI CTCAG 4 cut(s) 199, 670, 781, 889
BspFNI CGCG 1 cut(s) 736
BspLI GGNNCC 4 cut(s) 60, 70, 414, 1026
BspMAI CTGCAG 1 cut(s) 733
BspMI ACCTGC 1 cut(s) 919
BspPI GGATC 4 cut(s) 153, 712, 897, 957
BspT107I GGYRCC 1 cut(s) 1024
BsrDI GCAATG 2 cut(s) 344, 642
BsrFI RCCGGY 1 cut(s) 98
BsrGI TGTACA 1 cut(s) 662
BsrI ACTGG 2 cut(s) 70, 628
BssAI RCCGGY 1 cut(s) 98
BssECI CCNNGG 3 cut(s) 315, 399, 1173
BssMI GATC 6 cut(s) 28, 145, 704, 889, 949, 978
BssT1I CCWWGG 1 cut(s) 399
Bst2UI CCWGG 2 cut(s) 702, 1029
Bst4CI ACNGT 3 cut(s) 271, 556, 1168
Bst6I CTCTTC 1 cut(s) 290
BstAPI GCANNNNNTGC 1 cut(s) 737
BstAUI TGTACA 1 cut(s) 662
BstC8I GCNNGC 4 cut(s) 100, 354, 738, 756
BstDEI CTNAG 4 cut(s) 207, 657, 789, 897
BstDSI CCRYGG 1 cut(s) 1173
BstENI CCTNNNNNAGG 1 cut(s) 705
BstF5I GGATG 3 cut(s) 178, 340, 532
BstFNI CGCG 1 cut(s) 736
BstHHI GCGC 2 cut(s) 736, 760
BstKTI GATC 6 cut(s) 31, 148, 707, 892, 952, 981
BstMBI GATC 6 cut(s) 28, 145, 704, 889, 949, 978
BstMWI GCNNNNNNNGC 5 cut(s) 251, 737, 742, 751, 760
BstNI CCWGG 2 cut(s) 702, 1029
BstNSI RCATGY 2 cut(s) 549, 758
BstSCI CCNGG 3 cut(s) 109, 700, 1027
BstSFI CTRYAG 1 cut(s) 729
BstSLI GKGCMC 2 cut(s) 72, 718
BstUI CGCG 1 cut(s) 736
BstV1I GCAGC 5 cut(s) 361, 368, 715, 743, 772
BstV2I GAAGAC 1 cut(s) 1025
BstX2I RGATCY 2 cut(s) 28, 949
BstXI CCANNNNNNTGG 1 cut(s) 969
BstYI RGATCY 2 cut(s) 28, 949
BsuRI GGCC 3 cut(s) 70, 230, 413
BtgI CCRYGG 1 cut(s) 1173
BtsCI GGATG 3 cut(s) 178, 340, 532
BtsIMutI CAGTG 2 cut(s) 665, 988
BveI ACCTGC 1 cut(s) 919
Cac8I GCNNGC 4 cut(s) 100, 354, 738, 756
CfoI GCGC 2 cut(s) 736, 760
Cfr10I RCCGGY 1 cut(s) 98
Cfr13I GGNCC 5 cut(s) 68, 69, 396, 412, 956
CseI GACGC 1 cut(s) 752
CsiI ACCWGGT 1 cut(s) 1027
Csp6I GTAC 3 cut(s) 663, 819, 1025
CspCI CAANNNNNGTGG 2 cut(s) 927, 962
CviAII CATG 4 cut(s) 151, 546, 755, 893
CviQI GTAC 3 cut(s) 663, 819, 1025
DdeI CTNAG 4 cut(s) 207, 657, 789, 897
DpnI GATC 6 cut(s) 30, 147, 706, 891, 951, 980
DpnII GATC 6 cut(s) 28, 145, 704, 889, 949, 978
DraIII CACNNNGTG 1 cut(s) 660
Eam1104I CTCTTC 1 cut(s) 290
EarI CTCTTC 1 cut(s) 290
Ecl136II GAGCTC 1 cut(s) 373
Eco130I CCWWGG 1 cut(s) 399
Eco24I GRGCYC 2 cut(s) 72, 375
Eco47I GGWCC 2 cut(s) 396, 956
Eco53kI GAGCTC 1 cut(s) 373
Eco57I CTGAAG 1 cut(s) 188
Eco88I CYCGRG 1 cut(s) 374
EcoICRI GAGCTC 1 cut(s) 373
EcoNI CCTNNNNNAGG 1 cut(s) 705
EcoO109I RGGNCCY 2 cut(s) 396, 412
EcoRII CCWGG 2 cut(s) 700, 1027
EcoT14I CCWWGG 1 cut(s) 399
EcoT38I GRGCYC 2 cut(s) 72, 375
ErhI CCWWGG 1 cut(s) 399
FaeI CATG 4 cut(s) 154, 549, 758, 896
FaqI GGGAC 2 cut(s) 146, 352
FatI CATG 4 cut(s) 150, 545, 754, 892
Fnu4HI GCNGC 6 cut(s) 350, 357, 512, 729, 732, 761
FokI GGATG 3 cut(s) 185, 347, 519
FriOI GRGCYC 2 cut(s) 72, 375
Fsp4HI GCNGC 6 cut(s) 350, 357, 512, 729, 732, 761
FspI TGCGCA 1 cut(s) 759
GlaI GCGC 2 cut(s) 735, 759
GluI GCNGC 6 cut(s) 350, 357, 512, 729, 732, 761
GsaI CCCAGC 1 cut(s) 23
GsuI CTGGAG 2 cut(s) 53, 945
HaeIII GGCC 3 cut(s) 70, 230, 413
HapII CCGG 2 cut(s) 99, 110
HgaI GACGC 1 cut(s) 752
HhaI GCGC 2 cut(s) 736, 760
Hin1II CATG 4 cut(s) 154, 549, 758, 896
Hin6I GCGC 2 cut(s) 734, 758
HinP1I GCGC 2 cut(s) 734, 758
HindIII AAGCTT 1 cut(s) 278
HinfI GANTC 8 cut(s) 106, 249, 290, 311, 326, 524, 841, 1051
HpaII CCGG 2 cut(s) 99, 110
HphI GGTGA 9 cut(s) 125, 188, 223, 332, 502, 791, 985, 1060, 1080
Hpy166II GTNNAC 1 cut(s) 663
Hpy188I TCNGA 5 cut(s) 46, 310, 316, 331, 636
Hpy188III TCNNGA 2 cut(s) 32, 376
Hpy8I GTNNAC 1 cut(s) 663
HpyAV CCTTC 4 cut(s) 4, 163, 580, 670
HpyCH4III ACNGT 3 cut(s) 271, 556, 1168
HpyCH4IV ACGT 1 cut(s) 137
HpyCH4V TGCA 8 cut(s) 349, 549, 647, 731, 745, 908, 1164, 1186
HpyF10VI GCNNNNNNNGC 5 cut(s) 251, 737, 742, 751, 760
HpyF3I CTNAG 4 cut(s) 207, 657, 789, 897
HpySE526I ACGT 1 cut(s) 137
Hsp92II CATG 4 cut(s) 154, 549, 758, 896
HspAI GCGC 2 cut(s) 734, 758
KpnI GGTACC 1 cut(s) 1028
KroI GCCGGC 1 cut(s) 98
KroNI GCCGGC 1 cut(s) 100
Kzo9I GATC 6 cut(s) 28, 145, 704, 889, 949, 978
LmnI GCTCC 1 cut(s) 370
Lsp1109I GCAGC 5 cut(s) 361, 368, 715, 743, 772
LweI GCATC 4 cut(s) 37, 85, 656, 715
MabI ACCWGGT 1 cut(s) 1027
MaeII ACGT 1 cut(s) 137
MaeIII GTNAC 2 cut(s) 490, 934
MalI GATC 6 cut(s) 30, 147, 706, 891, 951, 980
MboI GATC 6 cut(s) 28, 145, 704, 889, 949, 978
MboII GAAGA 6 cut(s) 234, 307, 335, 988, 1025, 1060
MfeI CAATTG 1 cut(s) 795
MflI RGATCY 2 cut(s) 28, 949
MhlI GDGCHC 3 cut(s) 72, 375, 718
MluCI AATT 9 cut(s) 123, 404, 439, 630, 795, 1117, 1126, 1152, 1180
MlyI GAGTC 4 cut(s) 258, 299, 533, 1060
MmeI TCCRAC 1 cut(s) 751
MroNI GCCGGC 1 cut(s) 98
MseI TTAA 7 cut(s) 408, 438, 468, 801, 846, 864, 1179
MspA1I CMGCKG 1 cut(s) 965
MspI CCGG 2 cut(s) 99, 110
MspR9I CCNGG 3 cut(s) 111, 702, 1029
MunI CAATTG 1 cut(s) 795
Mva1269I GAATGC 1 cut(s) 908
MvaI CCWGG 2 cut(s) 702, 1029
MvnI CGCG 1 cut(s) 736
MwoI GCNNNNNNNGC 5 cut(s) 251, 737, 742, 751, 760
NaeI GCCGGC 1 cut(s) 100
NciI CCSGG 1 cut(s) 111
NdeII GATC 6 cut(s) 28, 145, 704, 889, 949, 978
NgoMIV GCCGGC 1 cut(s) 98
NlaIII CATG 4 cut(s) 154, 549, 758, 896
NlaIV GGNNCC 4 cut(s) 60, 70, 414, 1026
NmuCI GTSAC 2 cut(s) 490, 934
NsbI TGCGCA 1 cut(s) 759
NspI RCATGY 2 cut(s) 549, 758
PaeI GCATGC 1 cut(s) 758
PaeR7I CTCGAG 1 cut(s) 374
PctI GAATGC 1 cut(s) 908
PdiI GCCGGC 1 cut(s) 100
PfeI GAWTC 4 cut(s) 106, 311, 326, 841
PkrI GCNGC 6 cut(s) 351, 358, 513, 730, 733, 762
PleI GAGTC 4 cut(s) 257, 298, 532, 1059
PpsI GAGTC 4 cut(s) 257, 298, 532, 1059
PpuMI RGGWCCY 1 cut(s) 396
Psp124BI GAGCTC 1 cut(s) 375
Psp5II RGGWCCY 1 cut(s) 396
Psp6I CCWGG 2 cut(s) 700, 1027
PspFI CCCAGC 1 cut(s) 19
PspGI CCWGG 2 cut(s) 700, 1027
PspN4I GGNNCC 4 cut(s) 60, 70, 414, 1026
PspOMI GGGCCC 1 cut(s) 68
PspPI GGNCC 5 cut(s) 68, 69, 396, 412, 956
PspPPI RGGWCCY 1 cut(s) 396
PstI CTGCAG 1 cut(s) 733
PsuI RGATCY 2 cut(s) 28, 949
PvuII CAGCTG 1 cut(s) 965
RsaI GTAC 3 cut(s) 664, 820, 1026
RsaNI GTAC 3 cut(s) 663, 819, 1025
SacI GAGCTC 1 cut(s) 375
SaqAI TTAA 7 cut(s) 408, 438, 468, 801, 846, 864, 1179
SatI GCNGC 6 cut(s) 350, 357, 512, 729, 732, 761
Sau3AI GATC 6 cut(s) 28, 145, 704, 889, 949, 978
Sau96I GGNCC 5 cut(s) 68, 69, 396, 412, 956
ScaI AGTACT 1 cut(s) 820
SchI GAGTC 4 cut(s) 258, 299, 533, 1060
ScrFI CCNGG 3 cut(s) 111, 702, 1029
SduI GDGCHC 3 cut(s) 72, 375, 718
SexAI ACCWGGT 1 cut(s) 1027
SfaNI GCATC 4 cut(s) 37, 85, 656, 715
SfcI CTRYAG 1 cut(s) 729
Sfr274I CTCGAG 1 cut(s) 374
SinI GGWCC 2 cut(s) 396, 956
SlaI CTCGAG 1 cut(s) 374
SmlI CTYRAG 4 cut(s) 81, 374, 446, 814
SmoI CTYRAG 4 cut(s) 81, 374, 446, 814
SphI GCATGC 1 cut(s) 758
Sse9I AATT 9 cut(s) 123, 404, 439, 630, 795, 1117, 1126, 1152, 1180
SsiI CCGC 2 cut(s) 511, 571
SspI AATATT 1 cut(s) 943
SstI GAGCTC 1 cut(s) 375
StyD4I CCNGG 3 cut(s) 109, 700, 1027
StyI CCWWGG 1 cut(s) 399
TaaI ACNGT 3 cut(s) 271, 556, 1168
TaiI ACGT 1 cut(s) 140
TaqI TCGA 2 cut(s) 293, 375
TasI AATT 9 cut(s) 123, 404, 439, 630, 795, 1117, 1126, 1152, 1180
TatI WGTACW 2 cut(s) 662, 818
TauI GCSGC 1 cut(s) 514
TfiI GAWTC 4 cut(s) 106, 311, 326, 841
Tru1I TTAA 7 cut(s) 408, 438, 468, 801, 846, 864, 1179
Tru9I TTAA 7 cut(s) 408, 438, 468, 801, 846, 864, 1179
TscAI CASTG 2 cut(s) 665, 988
TseFI GTSAC 2 cut(s) 490, 934
TseI GCWGC 5 cut(s) 349, 356, 728, 731, 760
Tsp45I GTSAC 2 cut(s) 490, 934
TspDTI ATGAA 2 cut(s) 521, 618
TspGWI ACGGA 1 cut(s) 733
TspRI CASTG 2 cut(s) 665, 988
VpaK11BI GGWCC 2 cut(s) 396, 956
XagI CCTNNNNNAGG 1 cut(s) 705
XapI RAATTY 2 cut(s) 404, 630
XceI RCATGY 2 cut(s) 549, 758
XhoI CTCGAG 1 cut(s) 374
ZrmI AGTACT 1 cut(s) 820
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.