Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0001717

Physical Location & Seq

Genomic Coordinates Reverse (-)

28037472 .. 28046972

Gene Structure 9501 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG296400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

ATGGAGGGCAAGGAAAAACTGGGCAAAGATCCGCAGAATGGTTCTGATGCTAAGGAGGAACCTACTGGGCCCAAGGAGGAGCAGCCACCTCAAACAGAAAACGATGCAGACAGTAATCCAGGAAGAAAGGGCAATGGCAGTAGTGCCAGAGTCGCAAACAAGCTCAAAACTGTAGATAAACATGTGGGGGAGTCGAAGAGTTGGTTGTCTGATTCCGAGGGTGAGGAATCAGAGGATGGGACACCGTTGCAGCAAGCAGCTTTTATGAGGGAGCTGGAGAGTTTCTATAAGGAGAGGTCTTTGGAATTTAAGGCCCCTAAGTTTTATGGAGAACCACTAAATTGCCTCAAGTTATGGAGAGCTGTCGTTAGAGCTGGTGGTTACGATGTGGTGACTTCATCAAAGTTATGGCGGCAAGTAGGAGAGTCCTTTCATCCCCCCAAGACATGCACAACAGTATCTTGGACGTTTCGCATCTTTTATGAGAAGGCACTTTTGGAATATGAAAAGCATAAGAGGCAAACTGGGGAGATTCAGACAGCCATTGGATCGCTCACTCAGTGTACAACTGCTGTGAAGGAGGCAAGTAGTCATCAAGCACCTGGATCAGGTAGGGCACGGAGGGATGCTGCAGCGCGTGCTATGCAGGGTTGGCATGCACAGCGTCTTGTTGGATATGGTGAGATTGCTGAGCCTATTGTTAAGGACAAGAACTTAAGTACTACGCCAAAGCGTGAAAAGAATCTTAAAAGCATTGGTTCTATTAAACACAAAACACCAACCAGCCTGGATCATGCTGAGAAAACTGCAATCGTTGAGGCAGATAAGCAGTTAAGATTGCTACTTGCCACTCCAATTTCTTTATCCCAGATAATATTTTTTCTCTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000977 GO:0000981 GO:0001012 GO:0001067 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0016143 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019748 GO:0019757 GO:0019760 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044281 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901135 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576 GO:1901657 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ARID HSP20

Protein Analysis

296

Amino Acids

32.92

Weight (kDa)

8.9

Isoelectric Point (pI)

39.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ARID	PF01388	85 - 169	7.4e-20	ARID/BRIGHT DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001717)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20910 AT1G20910 AT1G76510 AT1G76510 AT1G76510 AT1G76510
fragaria_vesca	FvH4_2g17130 FvH4_5g29710 FvH4_5g29710 FvH4_5g29710 FvH4_5g29710 FvH4_5g29710
malus_domestica	MD05G1144500.v1.1 MD06G1002900.v1.1 MD10G1143800.v1.1
prunus_persica	Prupe.5G004500_v2.0.a1 Prupe.5G004500_v2.0.a1 Prupe.5G004500_v2.0.a1 Prupe.8G182600_v2.0.a1 Prupe.8G182600_v2.0.a1
pyrus_communis	pycom05g13950 pycom06g00300 pycom10g12380 pycom16g26250
rosa_chinensis	RchiOBHm_Chr6g0281551 RchiOBHm_Chr7g0216981
rosa_laevigata	RLG00000002516 RLG00000012964
rosa_multiflora	Rmu_sc0000854.1_g000027 Rmu_sc0012649.1_g000002 Rmu_sc0021437.1_g000002
rosa_roxburghii	Rroxscaffold_3G00242670 Rroxscaffold_7G00187010
rosa_rugosa	Rorug06G0141500 Rorug06G0141600 Rorug06G0141600 Rorug07G0164700 Rorug07G0164700
rosa_samantha	Rh6AG254000 Rh6BG256900 Rh6CG256100 Rh6DG248100 Rh7AG304900 Rh7BG296400 Rh7CG324000 Rh7DG305000
rosa_wichuraiana	Rw6G022050 Rw7G025890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	637
AciI	CCGC	2 cut(s)	32, 412
AclWI	GGATC	4 cut(s)	23, 556, 613, 798
AcsI	RAATTY	1 cut(s)	305
AdeI	CACNNNGTG	1 cut(s)	561
AfaI	GTAC	2 cut(s)	565, 721
AfiI	CCNNNNNNNGG	2 cut(s)	38, 608
AflII	CTTAAG	1 cut(s)	715
AflIII	ACRYGT	1 cut(s)	181
AjnI	CCWGG	3 cut(s)	118, 601, 786
AjuI	GAANNNNNNNTTGG	2 cut(s)	479, 511
AluBI	AGCT	5 cut(s)	163, 260, 274, 362, 374
AluI	AGCT	5 cut(s)	163, 260, 274, 362, 374
AlwI	GGATC	4 cut(s)	23, 556, 613, 798
AoxI	GGCC	2 cut(s)	68, 312
ApaI	GGGCCC	1 cut(s)	72
ApeKI	GCWGC	5 cut(s)	82, 250, 257, 629, 632
ApoI	RAATTY	1 cut(s)	305
AspLEI	GCGC	1 cut(s)	637
AspS9I	GGNCC	3 cut(s)	68, 69, 313
AsuHPI	GGTGA	3 cut(s)	233, 403, 692
BaeGI	GKGCMC	2 cut(s)	72, 619
BaeI	ACNNNNGTAYC	2 cut(s)	441, 474
BanII	GRGCYC	1 cut(s)	72
BbvI	GCAGC	5 cut(s)	94, 262, 269, 616, 644
BccI	CCATC	1 cut(s)	230
BciT130I	CCWGG	3 cut(s)	120, 603, 788
BfaI	CTAG	1 cut(s)	889
BfmI	CTRYAG	2 cut(s)	171, 630
BfrI	CTTAAG	1 cut(s)	715
BisI	GCNGC	6 cut(s)	83, 251, 258, 413, 630, 633
BlpI	GCTNAGC	1 cut(s)	690
BlsI	GCNGC	6 cut(s)	84, 252, 259, 414, 631, 634
BmcAI	AGTACT	1 cut(s)	721
Bme1390I	CCNGG	3 cut(s)	120, 603, 788
BmgT120I	GGNCC	3 cut(s)	68, 69, 313
BmiI	GGNNCC	3 cut(s)	60, 70, 315
BmrFI	CCNGG	3 cut(s)	120, 603, 788
BmrI	ACTGGG	3 cut(s)	29, 75, 534
BmsI	GCATC	4 cut(s)	37, 94, 483, 616
BmuI	ACTGGG	3 cut(s)	29, 75, 534
BpmI	CTGGAG	1 cut(s)	296
Bpu10I	CCTNAGC	1 cut(s)	51
Bpu1102I	GCTNAGC	1 cut(s)	690
BpuEI	CTTGAG	1 cut(s)	332
BsaJI	CCNNGG	2 cut(s)	72, 216
Bsc4I	CCNNNNNNNGG	2 cut(s)	38, 608
Bse1I	ACTGG	3 cut(s)	24, 70, 529
Bse3DI	GCAATG	1 cut(s)	139
BseBI	CCWGG	3 cut(s)	120, 603, 788
BseDI	CCNNGG	2 cut(s)	72, 216
BseGI	GGATG	3 cut(s)	241, 433, 631
BseLI	CCNNNNNNNGG	2 cut(s)	38, 608
BseMI	GCAATG	1 cut(s)	139
BseMII	CTCAG	3 cut(s)	572, 681, 789
BseNI	ACTGG	3 cut(s)	24, 70, 529
BseRI	GAGGAG	1 cut(s)	92
BseSI	GKGCMC	2 cut(s)	72, 619
BseXI	GCAGC	5 cut(s)	94, 262, 269, 616, 644
Bsh1236I	CGCG	1 cut(s)	637
BshFI	GGCC	2 cut(s)	70, 314
BslFI	GGGAC	1 cut(s)	253
BslI	CCNNNNNNNGG	2 cut(s)	38, 608
BsmFI	GGGAC	1 cut(s)	253
BsnI	GGCC	2 cut(s)	70, 314
Bsp120I	GGGCCC	1 cut(s)	68
Bsp1286I	GDGCHC	2 cut(s)	72, 619
Bsp1407I	TGTACA	1 cut(s)	563
Bsp143I	GATC	4 cut(s)	28, 548, 605, 790
Bsp1720I	GCTNAGC	1 cut(s)	690
BspACI	CCGC	2 cut(s)	32, 412
BspANI	GGCC	2 cut(s)	70, 314
BspCNI	CTCAG	3 cut(s)	571, 682, 790
BspFNI	CGCG	1 cut(s)	637
BspLI	GGNNCC	3 cut(s)	60, 70, 315
BspMAI	CTGCAG	1 cut(s)	634
BspPI	GGATC	4 cut(s)	23, 556, 613, 798
BspTI	CTTAAG	1 cut(s)	715
BsrDI	GCAATG	1 cut(s)	139
BsrGI	TGTACA	1 cut(s)	563
BsrI	ACTGG	3 cut(s)	24, 70, 529
BssECI	CCNNGG	2 cut(s)	72, 216
BssMI	GATC	4 cut(s)	28, 548, 605, 790
BssT1I	CCWWGG	1 cut(s)	72
Bst2UI	CCWGG	3 cut(s)	120, 603, 788
Bst4CI	ACNGT	4 cut(s)	113, 172, 246, 457
Bst6I	CTCTTC	1 cut(s)	191
BstAFI	CTTAAG	1 cut(s)	715
BstAPI	GCANNNNNTGC	1 cut(s)	638
BstAUI	TGTACA	1 cut(s)	563
BstC8I	GCNNGC	3 cut(s)	255, 639, 657
BstDEI	CTNAG	5 cut(s)	51, 318, 558, 690, 798
BstENI	CCTNNNNNAGG	1 cut(s)	606
BstF5I	GGATG	3 cut(s)	241, 433, 631
BstFNI	CGCG	1 cut(s)	637
BstHHI	GCGC	1 cut(s)	637
BstKTI	GATC	4 cut(s)	31, 551, 608, 793
BstMBI	GATC	4 cut(s)	28, 548, 605, 790
BstMWI	GCNNNNNNNGC	6 cut(s)	152, 517, 638, 643, 652, 661
BstNI	CCWGG	3 cut(s)	120, 603, 788
BstNSI	RCATGY	3 cut(s)	185, 450, 659
BstSCI	CCNGG	3 cut(s)	118, 601, 786
BstSFI	CTRYAG	2 cut(s)	171, 630
BstSLI	GKGCMC	2 cut(s)	72, 619
BstUI	CGCG	1 cut(s)	637
BstV1I	GCAGC	5 cut(s)	94, 262, 269, 616, 644
BstX2I	RGATCY	1 cut(s)	28
BstYI	RGATCY	1 cut(s)	28
BsuRI	GGCC	2 cut(s)	70, 314
BtsCI	GGATG	3 cut(s)	241, 433, 631
BtsIMutI	CAGTG	1 cut(s)	566
Cac8I	GCNNGC	3 cut(s)	255, 639, 657
CfoI	GCGC	1 cut(s)	637
Cfr13I	GGNCC	3 cut(s)	68, 69, 313
CseI	GACGC	1 cut(s)	653
Csp6I	GTAC	2 cut(s)	564, 720
CviAII	CATG	4 cut(s)	182, 447, 656, 794
CviQI	GTAC	2 cut(s)	564, 720
DdeI	CTNAG	5 cut(s)	51, 318, 558, 690, 798
DpnI	GATC	4 cut(s)	30, 550, 607, 792
DpnII	GATC	4 cut(s)	28, 548, 605, 790
DraIII	CACNNNGTG	1 cut(s)	561
Eam1104I	CTCTTC	1 cut(s)	191
EarI	CTCTTC	1 cut(s)	191
Eco130I	CCWWGG	1 cut(s)	72
Eco24I	GRGCYC	1 cut(s)	72
EcoNI	CCTNNNNNAGG	1 cut(s)	606
EcoO109I	RGGNCCY	1 cut(s)	313
EcoRII	CCWGG	3 cut(s)	118, 601, 786
EcoT14I	CCWWGG	1 cut(s)	72
EcoT38I	GRGCYC	1 cut(s)	72
ErhI	CCWWGG	1 cut(s)	72
FaeI	CATG	4 cut(s)	185, 450, 659, 797
FaqI	GGGAC	1 cut(s)	253
FatI	CATG	4 cut(s)	181, 446, 655, 793
Fnu4HI	GCNGC	6 cut(s)	83, 251, 258, 413, 630, 633
FokI	GGATG	3 cut(s)	248, 420, 638
FriOI	GRGCYC	1 cut(s)	72
Fsp4HI	GCNGC	6 cut(s)	83, 251, 258, 413, 630, 633
FspBI	CTAG	1 cut(s)	889
GlaI	GCGC	1 cut(s)	636
GluI	GCNGC	6 cut(s)	83, 251, 258, 413, 630, 633
GsuI	CTGGAG	1 cut(s)	296
HaeIII	GGCC	2 cut(s)	70, 314
HgaI	GACGC	1 cut(s)	653
HhaI	GCGC	1 cut(s)	637
Hin1II	CATG	4 cut(s)	185, 450, 659, 797
Hin6I	GCGC	1 cut(s)	635
HinP1I	GCGC	1 cut(s)	635
HinfI	GANTC	7 cut(s)	150, 191, 212, 227, 425, 532, 742
HphI	GGTGA	3 cut(s)	233, 403, 692
Hpy166II	GTNNAC	1 cut(s)	564
Hpy188I	TCNGA	5 cut(s)	46, 211, 217, 232, 537
Hpy8I	GTNNAC	1 cut(s)	564
HpyAV	CCTTC	2 cut(s)	481, 571
HpyCH4III	ACNGT	4 cut(s)	113, 172, 246, 457
HpyCH4IV	ACGT	1 cut(s)	467
HpyCH4V	TGCA	7 cut(s)	107, 250, 450, 632, 646, 659, 809
HpyF10VI	GCNNNNNNNGC	6 cut(s)	152, 517, 638, 643, 652, 661
HpyF3I	CTNAG	5 cut(s)	51, 318, 558, 690, 798
HpySE526I	ACGT	1 cut(s)	467
Hsp92II	CATG	4 cut(s)	185, 450, 659, 797
HspAI	GCGC	1 cut(s)	635
Kzo9I	GATC	4 cut(s)	28, 548, 605, 790
LmnI	GCTCC	2 cut(s)	79, 271
Lsp1109I	GCAGC	5 cut(s)	94, 262, 269, 616, 644
LweI	GCATC	4 cut(s)	37, 94, 483, 616
MaeI	CTAG	1 cut(s)	889
MaeII	ACGT	1 cut(s)	467
MaeIII	GTNAC	2 cut(s)	380, 391
MalI	GATC	4 cut(s)	30, 550, 607, 792
MboI	GATC	4 cut(s)	28, 548, 605, 790
MboII	GAAGA	2 cut(s)	135, 208
MflI	RGATCY	1 cut(s)	28
MhlI	GDGCHC	2 cut(s)	72, 619
MluCI	AATT	3 cut(s)	305, 340, 855
MlyI	GAGTC	3 cut(s)	159, 200, 434
MmeI	TCCRAC	1 cut(s)	652
MseI	TTAA	6 cut(s)	309, 702, 716, 747, 765, 833
MspCI	CTTAAG	1 cut(s)	715
MspR9I	CCNGG	3 cut(s)	120, 603, 788
MvaI	CCWGG	3 cut(s)	120, 603, 788
MvnI	CGCG	1 cut(s)	637
MwoI	GCNNNNNNNGC	6 cut(s)	152, 517, 638, 643, 652, 661
NdeII	GATC	4 cut(s)	28, 548, 605, 790
NlaIII	CATG	4 cut(s)	185, 450, 659, 797
NlaIV	GGNNCC	3 cut(s)	60, 70, 315
NmuCI	GTSAC	1 cut(s)	391
NspI	RCATGY	3 cut(s)	185, 450, 659
PaeI	GCATGC	1 cut(s)	659
PciI	ACATGT	1 cut(s)	181
PfeI	GAWTC	4 cut(s)	212, 227, 532, 742
PfoI	TCCNGGA	1 cut(s)	118
PkrI	GCNGC	6 cut(s)	84, 252, 259, 414, 631, 634
PleI	GAGTC	3 cut(s)	158, 199, 433
PpsI	GAGTC	3 cut(s)	158, 199, 433
PscI	ACATGT	1 cut(s)	181
Psp6I	CCWGG	3 cut(s)	118, 601, 786
PspGI	CCWGG	3 cut(s)	118, 601, 786
PspN4I	GGNNCC	3 cut(s)	60, 70, 315
PspOMI	GGGCCC	1 cut(s)	68
PspPI	GGNCC	3 cut(s)	68, 69, 313
PstI	CTGCAG	1 cut(s)	634
PsuI	RGATCY	1 cut(s)	28
RsaI	GTAC	2 cut(s)	565, 721
RsaNI	GTAC	2 cut(s)	564, 720
SaqAI	TTAA	6 cut(s)	309, 702, 716, 747, 765, 833
SatI	GCNGC	6 cut(s)	83, 251, 258, 413, 630, 633
Sau3AI	GATC	4 cut(s)	28, 548, 605, 790
Sau96I	GGNCC	3 cut(s)	68, 69, 313
ScaI	AGTACT	1 cut(s)	721
SchI	GAGTC	3 cut(s)	159, 200, 434
ScrFI	CCNGG	3 cut(s)	120, 603, 788
SduI	GDGCHC	2 cut(s)	72, 619
SfaNI	GCATC	4 cut(s)	37, 94, 483, 616
SfcI	CTRYAG	2 cut(s)	171, 630
SmlI	CTYRAG	2 cut(s)	347, 715
SmoI	CTYRAG	2 cut(s)	347, 715
SphI	GCATGC	1 cut(s)	659
Sse9I	AATT	3 cut(s)	305, 340, 855
SsiI	CCGC	2 cut(s)	32, 412
SspI	AATATT	1 cut(s)	876
SspMI	CTAG	1 cut(s)	889
StyD4I	CCNGG	3 cut(s)	118, 601, 786
StyI	CCWWGG	1 cut(s)	72
TaaI	ACNGT	4 cut(s)	113, 172, 246, 457
TaiI	ACGT	1 cut(s)	470
TaqI	TCGA	1 cut(s)	194
TasI	AATT	3 cut(s)	305, 340, 855
TatI	WGTACW	2 cut(s)	563, 719
TauI	GCSGC	1 cut(s)	415
TfiI	GAWTC	4 cut(s)	212, 227, 532, 742
Tru1I	TTAA	6 cut(s)	309, 702, 716, 747, 765, 833
Tru9I	TTAA	6 cut(s)	309, 702, 716, 747, 765, 833
TscAI	CASTG	1 cut(s)	566
TseFI	GTSAC	1 cut(s)	391
TseI	GCWGC	5 cut(s)	82, 250, 257, 629, 632
Tsp45I	GTSAC	1 cut(s)	391
TspDTI	ATGAA	3 cut(s)	387, 422, 519
TspGWI	ACGGA	1 cut(s)	634
TspRI	CASTG	1 cut(s)	566
Vha464I	CTTAAG	1 cut(s)	715
XagI	CCTNNNNNAGG	1 cut(s)	606
XapI	RAATTY	1 cut(s)	305
XceI	RCATGY	3 cut(s)	185, 450, 659
XspI	CTAG	1 cut(s)	889
ZrmI	AGTACT	1 cut(s)	721

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.