Rorug07G0164700

AT-rich interactive domain-containing protein

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
Physical Location & Seq
Forward (+)
13208326 .. 13214694
6369 bp
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UTR
Exon/CDS
Intron
Rorug07G0164700.1

Sequence Viewer

Length: 1581 bp
ATGGCACTCATTACACAGACAGGCTCGTCATACTGCATACGTAACGAGATGTTTCAGAATAAAACTGGACAAAATGTGGTGTTTAGTAGGGCAAGCAATATAGAGGCGTCCAAATTGAAGGACAACTGCATTGGCTTCTCTTCGTTATCGTGTAATTCTGCTAGGAAGACACAGATTTTGCATACGGACAATGCTGGAGTAGGACAGAAACGATGCCATAGTGTGGTAGTTGCAGCCAGTCCTCCCACAGAAGATGCTGTAATTGCTACGGAACCGCTGACGAAAGAGGATCTTGTAGCATATCTTGCCTCTGGATGCAAGCCTAAGGAAGCATGGAGAATTGGCACTGAACACGAGAAGTTTGGTTTTGAGCTCAAATCTTTACGTCCAGTGAAATATGAACAAATATCTGAGTTGCTTAATGGGATTGCCGAGAGATTTGATTGGGAAAAAGTTATGGAAGGCGACTACATTATTGGACTCAAACAGGGTAAGCAAAGTATATCACTTGAGCCTGGTGGCCAATTTGAGCTTAGTGGTGCACCTCTTGAAACTCTGCATCAAACTTGTGCTGAAGTCAATTCACACCTGTATCAGGTCAAAGCAGTTACAGAGGAAATGGGAATTGGATTTCTTGGCATTGGTTTTCAGCCTAAATGGGGACTGAAGGACATACCTATAATGCCCAAGGGAAGGTATGAGATTATGAAAAATTACATGCCCAAAGTTGGCACGCTTGGACTTGATATGATGTTCAGGACATGCACCGTACAGGTGAATCTGGACTTCAGCTCTGAAGCAGACATGATAAGGAAATTTCGTGCTGGTCTTGCTTTGCAGCCTATTGCAACAGCTCTATTTGCAAATTCACCTTTTACCGAAGGAAAGCCAAATGGTTTTCTAAGCATGAGAAGTCAAATTTGGACCGATACTGACAACAATCGCACTGGCATGCTTCCTTTTGTTTTTGATGACTCCTTTGGATTTGAGCAGTATGTTGATTATGCTCTTGATGTTCCCATGTACTTTGTCTATCGGAATAAAAAGTATATTGACTGTACTGGCATGACCTTCCGGGACTTTTTGGCTGGGAAGCTTCGTTGCATTCCTGGTGAATTGCCAACCCTGAACGATTGGGAGAATCATTTGACAACTATATTTCCTGAGGTCAGGCTGAAGAGATACTTGGAGATGAGGGGAGCTGATGGAGGGCCTTGGAGGAGATTATGTGCTTTGCCAGCATTTTGGGTAGGTATACTGTACGATGAGGTTTCCCTTCAAAATGTGTTGGACATTACTGCTGATTGGACCCCTGAAGAAAGACAGATGCTAAGAAATAAGGTTCCAATAACTGGTCTAAAGACACCATTTAGGGATGGATTGCTCAAGCATGTTGCTCAAGATGTTGTAAAGTTGGCAAAGGATGGACTTGAAAGAAGAGGCTTTAAGGAATCTGGCTTCTTGAATGAGGTGGCAGAGGTGGTTAGAACTGGTGTAACACCAGCTGAGAGATTATTGGAGTTGTACAATGGGAAGTGGGAACAACAGATAGACCCTGTTTTTGAAGAGCTACTATACTGA

Protein Analysis

526

Amino Acids

59.4

Weight (kDa)

5.84

Isoelectric Point (pI)

37.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GCS2 PF04107 113 - 523 1.2e-106 Glutamate-cysteine ligase family 2(GCS2)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 25
AccB7I CCANNNNNTGG 2 cut(s) 223, 1352
AccI GTMKAC 1 cut(s) 1255
AciI CCGC 1 cut(s) 275
AclWI GGATC 1 cut(s) 297
AcoI YGGCCR 1 cut(s) 520
AcsI RAATTY 3 cut(s) 815, 865, 918
AcuI CTGAAG 6 cut(s) 594, 686, 772, 816, 1196, 1335
AcyI GRCGYC 1 cut(s) 107
AfaI GTAC 5 cut(s) 771, 1025, 1060, 1262, 1526
AfiI CCNNNNNNNGG 6 cut(s) 223, 595, 659, 693, 728, 1352
AgsI TTSAA 6 cut(s) 118, 551, 1280, 1433, 1465, 1565
AjnI CCWGG 2 cut(s) 514, 1108
AjuI GAANNNNNNNTTGG 6 cut(s) 609, 641, 904, 936, 1169, 1201
AluBI AGCT 8 cut(s) 373, 532, 792, 854, 1096, 1202, 1505, 1570
AluI AGCT 8 cut(s) 373, 532, 792, 854, 1096, 1202, 1505, 1570
Alw21I GWGCWC 2 cut(s) 375, 544
Alw44I GTGCAC 1 cut(s) 540
AlwI GGATC 1 cut(s) 297
AoxI GGCC 2 cut(s) 520, 1211
ApaLI GTGCAC 1 cut(s) 540
ApeKI GCWGC 2 cut(s) 233, 838
ApoI RAATTY 3 cut(s) 815, 865, 918
ArsI GACNNNNNNTTYG 4 cut(s) 160, 192, 1544, 1576
AspS9I GGNCC 3 cut(s) 924, 1211, 1308
AsuC2I CCSGG 1 cut(s) 1076
AsuHPI GGTGA 3 cut(s) 787, 861, 1124
AvaII GGWCC 2 cut(s) 924, 1308
AxyI CCTNAGG 2 cut(s) 324, 1164
BaeGI GKGCMC 1 cut(s) 544
BaeI ACNNNNGTAYC 2 cut(s) 575, 608
BalI TGGCCA 1 cut(s) 522
BanII GRGCYC 1 cut(s) 375
BauI CACGAG 1 cut(s) 353
BbsI GAAGAC 1 cut(s) 173
Bbv12I GWGCWC 2 cut(s) 375, 544
BbvI GCAGC 2 cut(s) 245, 850
BccI CCATC 3 cut(s) 1199, 1370, 1418
BciT130I CCWGG 2 cut(s) 516, 1110
BcnI CCSGG 1 cut(s) 1076
BfaI CTAG 1 cut(s) 162
BisI GCNGC 2 cut(s) 234, 839
BlsI GCNGC 2 cut(s) 235, 840
Bme1390I CCNGG 3 cut(s) 516, 1076, 1110
Bme18I GGWCC 2 cut(s) 924, 1308
BmgT120I GGNCC 3 cut(s) 924, 1211, 1308
BmiI GGNNCC 3 cut(s) 273, 1310, 1344
BmrFI CCNGG 3 cut(s) 516, 1076, 1110
BmsI GCATC 5 cut(s) 203, 244, 305, 568, 1317
BpiI GAAGAC 1 cut(s) 173
BpmI CTGGAG 1 cut(s) 216
BpuEI CTTGAG 3 cut(s) 530, 1370, 1383
BpuMI CCSGG 1 cut(s) 1076
BsaAI YACGTR 1 cut(s) 41
BsaHI GRCGYC 1 cut(s) 107
BsaJI CCNNGG 2 cut(s) 687, 1214
BsaXI ACNNNNNCTCC 2 cut(s) 1213, 1243
Bsc4I CCNNNNNNNGG 6 cut(s) 223, 595, 659, 693, 728, 1352
Bse1I ACTGG 7 cut(s) 70, 237, 389, 952, 1066, 1357, 1495
Bse21I CCTNAGG 2 cut(s) 324, 1164
BseBI CCWGG 2 cut(s) 516, 1110
BseDI CCNNGG 2 cut(s) 687, 1214
BseGI GGATG 3 cut(s) 320, 1381, 1429
BseLI CCNNNNNNNGG 6 cut(s) 223, 595, 659, 693, 728, 1352
BseMII CTCAG 3 cut(s) 402, 1155, 1497
BseNI ACTGG 7 cut(s) 70, 237, 389, 952, 1066, 1357, 1495
BseRI GAGGAG 1 cut(s) 1234
BseSI GKGCMC 1 cut(s) 544
BseXI GCAGC 2 cut(s) 245, 850
BseYI CCCAGC 1 cut(s) 1088
BshFI GGCC 2 cut(s) 522, 1213
BsiHKAI GWGCWC 2 cut(s) 375, 544
BsiSI CCGG 1 cut(s) 1075
BslFI GGGAC 2 cut(s) 675, 1091
BslI CCNNNNNNNGG 6 cut(s) 223, 595, 659, 693, 728, 1352
BsmFI GGGAC 2 cut(s) 675, 1091
BsmI GAATGC 1 cut(s) 1104
BsnI GGCC 2 cut(s) 522, 1213
Bsp1286I GDGCHC 2 cut(s) 375, 544
Bsp1407I TGTACA 1 cut(s) 1524
Bsp143I GATC 1 cut(s) 289
BspACI CCGC 1 cut(s) 275
BspANI GGCC 2 cut(s) 522, 1213
BspCNI CTCAG 3 cut(s) 403, 1156, 1498
BspLI GGNNCC 3 cut(s) 273, 1310, 1344
BspPI GGATC 1 cut(s) 297
BspQI GCTCTTC 1 cut(s) 1560
BsrGI TGTACA 1 cut(s) 1524
BsrI ACTGG 7 cut(s) 70, 237, 389, 952, 1066, 1357, 1495
BssECI CCNNGG 2 cut(s) 687, 1214
BssMI GATC 1 cut(s) 289
BssNAI GTATAC 1 cut(s) 1256
BssNI GRCGYC 1 cut(s) 107
BssSI CACGAG 1 cut(s) 353
BssT1I CCWWGG 2 cut(s) 687, 1214
Bst1107I GTATAC 1 cut(s) 1256
Bst2BI CACGAG 1 cut(s) 353
Bst2UI CCWGG 2 cut(s) 516, 1110
Bst4CI ACNGT 3 cut(s) 769, 1058, 1260
Bst6I CTCTTC 4 cut(s) 145, 1172, 1432, 1560
BstACI GRCGYC 1 cut(s) 107
BstAPI GCANNNNNTGC 1 cut(s) 305
BstAUI TGTACA 1 cut(s) 1524
BstBAI YACGTR 1 cut(s) 41
BstC8I GCNNGC 5 cut(s) 94, 320, 734, 953, 1239
BstDEI CTNAG 7 cut(s) 324, 411, 533, 902, 1164, 1331, 1506
BstENI CCTNNNNNAGG 1 cut(s) 593
BstF5I GGATG 3 cut(s) 320, 1381, 1429
BstKTI GATC 1 cut(s) 292
BstMBI GATC 1 cut(s) 289
BstMWI GCNNNNNNNGC 5 cut(s) 263, 305, 830, 860, 1238
BstNI CCWGG 2 cut(s) 516, 1110
BstNSI RCATGY 4 cut(s) 721, 765, 955, 1394
BstSCI CCNGG 3 cut(s) 514, 1074, 1108
BstSLI GKGCMC 1 cut(s) 544
BstSNI TACGTA 1 cut(s) 41
BstV1I GCAGC 2 cut(s) 245, 850
BstV2I GAAGAC 1 cut(s) 173
BstX2I RGATCY 1 cut(s) 289
BstXI CCANNNNNNTGG 1 cut(s) 1245
BstYI RGATCY 1 cut(s) 289
BstZ17I GTATAC 1 cut(s) 1256
Bsu36I CCTNAGG 2 cut(s) 324, 1164
BsuRI GGCC 2 cut(s) 522, 1213
BtsCI GGATG 3 cut(s) 320, 1381, 1429
BtsIMutI CAGTG 3 cut(s) 345, 396, 945
Cac8I GCNNGC 5 cut(s) 94, 320, 734, 953, 1239
Cfr13I GGNCC 3 cut(s) 924, 1211, 1308
CseI GACGC 1 cut(s) 96
Csp6I GTAC 5 cut(s) 770, 1024, 1059, 1261, 1525
CviAII CATG 9 cut(s) 333, 718, 762, 805, 907, 952, 1021, 1066, 1391
CviQI GTAC 5 cut(s) 770, 1024, 1059, 1261, 1525
DdeI CTNAG 7 cut(s) 324, 411, 533, 902, 1164, 1331, 1506
DpnI GATC 1 cut(s) 291
DpnII GATC 1 cut(s) 289
DrdI GACNNNNNNGTC 1 cut(s) 25
DseDI GACNNNNNNGTC 1 cut(s) 25
EaeI YGGCCR 1 cut(s) 520
Eam1104I CTCTTC 4 cut(s) 145, 1172, 1432, 1560
EarI CTCTTC 4 cut(s) 145, 1172, 1432, 1560
Ecl136II GAGCTC 1 cut(s) 373
Eco105I TACGTA 1 cut(s) 41
Eco130I CCWWGG 2 cut(s) 687, 1214
Eco24I GRGCYC 1 cut(s) 375
Eco47I GGWCC 2 cut(s) 924, 1308
Eco53kI GAGCTC 1 cut(s) 373
Eco57I CTGAAG 6 cut(s) 594, 686, 772, 816, 1196, 1335
Eco81I CCTNAGG 2 cut(s) 324, 1164
EcoICRI GAGCTC 1 cut(s) 373
EcoNI CCTNNNNNAGG 1 cut(s) 593
EcoO109I RGGNCCY 1 cut(s) 1211
EcoRII CCWGG 2 cut(s) 514, 1108
EcoT14I CCWWGG 2 cut(s) 687, 1214
EcoT38I GRGCYC 1 cut(s) 375
ErhI CCWWGG 2 cut(s) 687, 1214
FaeI CATG 9 cut(s) 336, 721, 765, 808, 910, 955, 1024, 1069, 1394
FalI AAGNNNNNCTT 4 cut(s) 276, 308, 1169, 1201
FaqI GGGAC 2 cut(s) 675, 1091
FatI CATG 9 cut(s) 332, 717, 761, 804, 906, 951, 1020, 1065, 1390
FblI GTMKAC 1 cut(s) 1255
Fnu4HI GCNGC 2 cut(s) 234, 839
FokI GGATG 3 cut(s) 327, 1388, 1436
FriOI GRGCYC 1 cut(s) 375
Fsp4HI GCNGC 2 cut(s) 234, 839
FspBI CTAG 1 cut(s) 162
GluI GCNGC 2 cut(s) 234, 839
GsaI CCCAGC 1 cut(s) 1092
GsuI CTGGAG 1 cut(s) 216
HaeIII GGCC 2 cut(s) 522, 1213
HapII CCGG 1 cut(s) 1075
HgaI GACGC 1 cut(s) 96
Hin1I GRCGYC 1 cut(s) 107
Hin1II CATG 9 cut(s) 336, 721, 765, 808, 910, 955, 1024, 1069, 1394
HindIII AAGCTT 1 cut(s) 1094
HinfI GANTC 5 cut(s) 480, 778, 974, 1141, 1451
HpaII CCGG 1 cut(s) 1075
HphI GGTGA 3 cut(s) 787, 861, 1124
Hpy166II GTNNAC 2 cut(s) 542, 1256
Hpy188I TCNGA 4 cut(s) 57, 412, 796, 1038
Hpy188III TCNNGA 8 cut(s) 312, 548, 757, 782, 1010, 1163, 1400, 1462
Hpy8I GTNNAC 2 cut(s) 542, 1256
HpyAV CCTTC 7 cut(s) 112, 455, 661, 687, 875, 1081, 1286
HpyCH4III ACNGT 3 cut(s) 769, 1058, 1260
HpyCH4IV ACGT 2 cut(s) 40, 385
HpyF10VI GCNNNNNNNGC 5 cut(s) 263, 305, 830, 860, 1238
HpyF3I CTNAG 7 cut(s) 324, 411, 533, 902, 1164, 1331, 1506
HpySE526I ACGT 2 cut(s) 40, 385
Hsp92I GRCGYC 1 cut(s) 107
Hsp92II CATG 9 cut(s) 336, 721, 765, 808, 910, 955, 1024, 1069, 1394
Kzo9I GATC 1 cut(s) 289
LguI GCTCTTC 1 cut(s) 1560
LmnI GCTCC 1 cut(s) 1199
Lsp1109I GCAGC 2 cut(s) 245, 850
LweI GCATC 5 cut(s) 203, 244, 305, 568, 1317
MaeI CTAG 1 cut(s) 162
MaeII ACGT 2 cut(s) 40, 385
MaeIII GTNAC 3 cut(s) 41, 607, 1495
MalI GATC 1 cut(s) 291
MboI GATC 1 cut(s) 289
MboII GAAGA 7 cut(s) 132, 178, 263, 1189, 1328, 1449, 1577
MflI RGATCY 1 cut(s) 289
MhlI GDGCHC 2 cut(s) 375, 544
MlsI TGGCCA 1 cut(s) 522
MluNI TGGCCA 1 cut(s) 522
MlyI GAGTC 2 cut(s) 474, 968
MmeI TCCRAC 1 cut(s) 1269
Mox20I TGGCCA 1 cut(s) 522
MscI TGGCCA 1 cut(s) 522
MseI TTAA 2 cut(s) 420, 1446
MslI CAYNNNNRTG 1 cut(s) 950
Msp20I TGGCCA 1 cut(s) 522
MspA1I CMGCKG 2 cut(s) 277, 1505
MspI CCGG 1 cut(s) 1075
MspR9I CCNGG 3 cut(s) 516, 1076, 1110
Mva1269I GAATGC 1 cut(s) 1104
MvaI CCWGG 2 cut(s) 516, 1110
MwoI GCNNNNNNNGC 5 cut(s) 263, 305, 830, 860, 1238
NciI CCSGG 1 cut(s) 1076
NdeII GATC 1 cut(s) 289
NlaIII CATG 9 cut(s) 336, 721, 765, 808, 910, 955, 1024, 1069, 1394
NlaIV GGNNCC 3 cut(s) 273, 1310, 1344
NmeAIII GCCGAG 1 cut(s) 457
NspI RCATGY 4 cut(s) 721, 765, 955, 1394
PaeI GCATGC 1 cut(s) 955
PciSI GCTCTTC 1 cut(s) 1560
PctI GAATGC 1 cut(s) 1104
PfeI GAWTC 3 cut(s) 778, 1141, 1451
PflMI CCANNNNNTGG 2 cut(s) 223, 1352
PfoI TCCNGGA 1 cut(s) 1074
PkrI GCNGC 2 cut(s) 235, 840
PleI GAGTC 2 cut(s) 474, 968
PpsI GAGTC 2 cut(s) 474, 968
Ppu21I YACGTR 1 cut(s) 41
Psp124BI GAGCTC 1 cut(s) 375
Psp6I CCWGG 2 cut(s) 514, 1108
PspFI CCCAGC 1 cut(s) 1088
PspGI CCWGG 2 cut(s) 514, 1108
PspN4I GGNNCC 3 cut(s) 273, 1310, 1344
PspPI GGNCC 3 cut(s) 924, 1211, 1308
PsuI RGATCY 1 cut(s) 289
PvuII CAGCTG 1 cut(s) 1505
RsaI GTAC 5 cut(s) 771, 1025, 1060, 1262, 1526
RsaNI GTAC 5 cut(s) 770, 1024, 1059, 1261, 1525
RseI CAYNNNNRTG 1 cut(s) 950
SacI GAGCTC 1 cut(s) 375
SapI GCTCTTC 1 cut(s) 1560
SaqAI TTAA 2 cut(s) 420, 1446
SatI GCNGC 2 cut(s) 234, 839
Sau3AI GATC 1 cut(s) 289
Sau96I GGNCC 3 cut(s) 924, 1211, 1308
SchI GAGTC 2 cut(s) 474, 968
ScrFI CCNGG 3 cut(s) 516, 1076, 1110
SduI GDGCHC 2 cut(s) 375, 544
SfaNI GCATC 5 cut(s) 203, 244, 305, 568, 1317
SinI GGWCC 2 cut(s) 924, 1308
SmiMI CAYNNNNRTG 1 cut(s) 950
SmlI CTYRAG 3 cut(s) 509, 1385, 1398
SmoI CTYRAG 3 cut(s) 509, 1385, 1398
SnaBI TACGTA 1 cut(s) 41
SphI GCATGC 1 cut(s) 955
SsiI CCGC 1 cut(s) 275
SspMI CTAG 1 cut(s) 162
SstI GAGCTC 1 cut(s) 375
StyD4I CCNGG 3 cut(s) 514, 1074, 1108
StyI CCWWGG 2 cut(s) 687, 1214
TaaI ACNGT 3 cut(s) 769, 1058, 1260
TaiI ACGT 2 cut(s) 43, 388
TaqII GACCGA 1 cut(s) 941
TatI WGTACW 3 cut(s) 1023, 1058, 1524
TfiI GAWTC 3 cut(s) 778, 1141, 1451
Tru1I TTAA 2 cut(s) 420, 1446
Tru9I TTAA 2 cut(s) 420, 1446
TscAI CASTG 3 cut(s) 352, 396, 952
TseI GCWGC 2 cut(s) 233, 838
TspDTI ATGAA 2 cut(s) 414, 722
TspGWI ACGGA 2 cut(s) 200, 284
TspRI CASTG 3 cut(s) 352, 396, 952
Van91I CCANNNNNTGG 2 cut(s) 223, 1352
VneI GTGCAC 1 cut(s) 540
VpaK11BI GGWCC 2 cut(s) 924, 1308
XagI CCTNNNNNAGG 1 cut(s) 593
XapI RAATTY 3 cut(s) 815, 865, 918
XceI RCATGY 4 cut(s) 721, 765, 955, 1394
XmiI GTMKAC 1 cut(s) 1255
XspI CTAG 1 cut(s) 162
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.