MD10G1143800.v1.1

BRIGHT, ARID (A/T-rich interaction domain) domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0001717
Physical Location & Seq
Reverse (-)
23080634 .. 23086270
5637 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1143800.v1.1.491

Sequence Viewer

Length: 2670 bp
ATGGAAAAACCATTGCAAAGAGAGCAGCGGAAGCAACAGATCAATAGCAGACCAGCAGAGGCAGAAAGCACAACTCCCTCACCCACCGCCACTTCACCATCTCCTCCGTGCCCCAAAACGGTAGCTGGGAAAGGAAGACGGAGGGAAAAAATGGCGGATGTAGAGAAAGAGGAGGGGAAAATTGTGGAGGATGAGGAATTCAAAGGGGTGGCAGATACCCATGTTCGTGAACAGCTTGAAGGGGGAGAAGAACCAAACACCAACACATTAGATGGTGTAGAAATGGAGACCCAGAAGAGCCTTGACGAAAATGGAGTTGAATTGCCTGGTGAGGAAATCCGGGGTGCAGTTGATCCAGTTTCCGCTGTCCCCGAAATTCCTGAAGATGCTAATGTTGCCGATGAGATGTCCAGTGAGCCGGGTTCTGGTACTGAAACTGATAAGGTTGTGAGTTATGTGGATTCTGGTGTGCATGGTGGGAGTGAGGTTTCTGTGAAGATTGTAAGTGAGGAGAGTGGTGGTGAGAAAGGGAAGGCCCTGAAGGATGATTTGGGCAGCAAAGTTGACCCATCTATTGAATTGGGTGCCCGTGCCGAGGCTGAGAGTCTTGTTGGTGATGGTGGATCCCATCACACTGTGGACCCTATGGAGATTGAAAAGGAAGATGATGGTGTTGGAGAAGAAAAGGCACTGAAGGATGGGGTGAGCGGCGAGGCCAACCCTTCCAATGAACCAGATATTGGTGCTAAAACTGATGATGTTGCTTGTGAGATGGAGCTTGATATGCCTCATAATGGTGAGGTTGCAGTGGAGAAACTGACAGATGGGGCGAGCAACGAGGCCAAATCCTCCAATGAGCCAGATAGCAGTGCTGAAACTGGTATTATTGTTCGTAAGGTGGAGCTTGATACTCGTGATAGTGAGGTTGAACCGGAGAAACTGAAAGATGGGGTGACCAGCGAGGTCTACCCATATGGTGAACCATATATTAGTGCTGAAGATGATAATGCTGCTCGTAAGGTGGAGCCTGGTATGCCTCATGATAGTGAGCTTGCAACGGAAATACTAATAGATCGGGCGAACAACAAGGCAAAATCCTCTAGTGAACTAGACAGTAGTGTTGAATATGAAAATGTCGTTGGAATGGTGGAGCTCGATATGTCTCATGATAATGGGGCTACAACGGAGAAACTGATGGATGGGGTGAGCATTGAAGCCAACCCCTCTGGTGAACCAAATATCAGTGTTGAAGCTGATAATGCAGCTCGTAAGGTGAAGCATGATATGCCTTGTGATGGTGAGCTTGCAACCGATAAACTGACAAATAAGGTGAGCAGCAAGGCCAACCCCTCCAGTGAACTGCACATCAGTGCCGAATCTGATAATTCTGTTTGTAAGATGGAAACTGATACAATGCCTCATGATAGTGGGGTTGCTATGAAGACACTGATAGGTGGGTTGAACATCAAGGCCAGCCCCTCCAATGAACCCCATATCAGTGCTGAAACTGATAATGTTGTTAGTAAGGTGGAGCCTGATATGCATCTTGATAATGAAGTCGAAATGGAGACTGAATCTGATGATGATGGTGAGAAAGTAGAGGTACTGAATGGTGGGGTGAGCAACAAAACAAAGTTTTCTTTTCACACCGACATAAACGAGCAACTGCAGAAACCCAAGTTTTATGTTGGACGTAAGGTTGGGATGAAGAGCTTAGAACCAAAGAAAACCTTCCTCTTGGATCCAGGTGCTGATGAGGGTGGTGAGTCGGGGACTGAGGAGGAGCAAACGTCATTCATGAAGGAGGTTGAGAGTTTATATAAAGAGAAGAATTTGGAATTCAAAGCCCCAAAGTTTTACAAAGAGGAATTAAATTTGCTCAAGTTATGGAGAGCTGTGATCAAACTTGGTGGCTATGACAAGGTTACTACATGCAAATTGTGGCGGCAGGTCGGAGAATCATTCAATCCCCCAAAAACGTGTACTACTGTTTCTTGGACTTTCCGAAATTTTTATGAGAAGGCATTACTTGAATTTGAAAGGGACAGACTTCATGGTGGTGAACTTCCTCTTCCTGCAGAGCCTACTAGAGTTGAGAATCGGGCTGATGGTGGCCATACTTTAGGATCAGGCAGGGCACTGAGGGATGCTGCAGCTCGTGCCATGCAGGGTTGGCACTCTCACCGCCATCATGGTAATAATGGTGAGGTTGGAGATGCAACTAATAAGGATAAGCACTTGAGTACCATGCCAAAAAGTGACAAGCAACTTAAAAGTTCTGGTTTACTAAAGCGGAAAAAGCCATCTCATATGGATTCTGCTGTCCCAGTTGCTGACATGAAAGCTATAAAACCACGGGATACAATGGTATTTGATATTGGACCTCCAGCAGATTGGGTGAAGATTAATGTGAAAAGATTTAATGACTGCTTTGAGGTATATGCCTTAGTTCCTGGGCTACTGCGCGAGGAGGTGCATGTTCAATCTGACCCAGCCGGACGCTTGATTATATCCGGCCAACCAGCACAACTGGATAATCCTTGGGGTGTCGCACCCTTTAAGAAGGTTGTCAGCCTACCTTCGAGAATCGATCCACACCAGACATCTGCGGTAGTGACCTTGAATGGCCAGTTGTTTGTGCGCGTTCCATTTGAACAGTCAGATTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ARID HSP20

Protein Analysis

890

Amino Acids

96.8

Weight (kDa)

4.77

Isoelectric Point (pI)

43.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ARID PF01388 596 - 680 4.5e-19 ARID/BRIGHT DNA binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1939
AccB1I GGYRCC 1 cut(s) 584
AccB7I CCANNNNNTGG 1 cut(s) 740
AccBSI CCGCTC 1 cut(s) 708
AccI GTMKAC 1 cut(s) 966
AccII CGCG 2 cut(s) 2466, 2643
AciI CCGC 9 cut(s) 28, 87, 155, 363, 708, 1945, 2185, 2293, 2609
AclWI GGATC 7 cut(s) 347, 618, 631, 1736, 1749, 2134, 2585
AcoI YGGCCR 3 cut(s) 2113, 2515, 2626
AcsI RAATTY 7 cut(s) 197, 375, 1831, 1838, 1873, 2008, 2033
AcuI CTGAAG 4 cut(s) 402, 560, 713, 1017
AdeI CACNNNGTG 1 cut(s) 637
AfaI GTAC 4 cut(s) 430, 1605, 1984, 2245
AfiI CCNNNNNNNGG 6 cut(s) 118, 425, 595, 740, 794, 1295
AflIII ACRYGT 1 cut(s) 1979
AjnI CCWGG 4 cut(s) 325, 1027, 1744, 2452
AjuI GAANNNNNNNTTGG 6 cut(s) 533, 565, 723, 755, 1122, 1154
AleI CACNNNNGTG 1 cut(s) 1368
Alw21I GWGCWC 1 cut(s) 1155
Alw26I GTCTC 3 cut(s) 281, 1167, 1562
AlwI GGATC 7 cut(s) 347, 618, 631, 1736, 1749, 2134, 2585
AlwNI CAGNNNCTG 2 cut(s) 1751, 2333
AoxI GGCC 8 cut(s) 534, 714, 840, 1341, 1470, 2113, 2515, 2626
ApeKI GCWGC 7 cut(s) 25, 555, 1010, 1262, 1335, 2150, 2153
ApoI RAATTY 7 cut(s) 197, 375, 1831, 1838, 1873, 2008, 2033
AseI ATTAAT 1 cut(s) 2406
Asp700I GAANNNNTTC 1 cut(s) 1730
AspLEI GCGC 2 cut(s) 2466, 2643
AspS9I GGNCC 3 cut(s) 535, 640, 2381
AsuC2I CCSGG 2 cut(s) 341, 420
AvaII GGWCC 2 cut(s) 640, 2381
BaeGI GKGCMC 3 cut(s) 113, 589, 2140
BaeI ACNNNNGTAYC 6 cut(s) 207, 240, 2227, 2260, 2352, 2385
BalI TGGCCA 2 cut(s) 2115, 2628
BamHI GGATCC 2 cut(s) 623, 1741
BanI GGYRCC 1 cut(s) 584
BanII GRGCYC 1 cut(s) 1155
BauI CACGAG 2 cut(s) 912, 2157
BbsI GAAGAC 2 cut(s) 142, 1448
Bbv12I GWGCWC 1 cut(s) 1155
BbvI GCAGC 7 cut(s) 37, 567, 997, 1274, 1347, 2137, 2165
BciT130I CCWGG 4 cut(s) 327, 1029, 1746, 2454
BciVI GTATCC 1 cut(s) 2353
BclI TGATCA 1 cut(s) 1899
BcnI CCSGG 2 cut(s) 341, 420
BcoDI GTCTC 3 cut(s) 281, 1167, 1562
BfaI CTAG 3 cut(s) 1101, 1109, 2088
BfmI CTRYAG 3 cut(s) 1667, 2076, 2151
BfuAI ACCTGC 1 cut(s) 1939
BfuI GTATCC 1 cut(s) 2353
BisI GCNGC 9 cut(s) 26, 556, 709, 1011, 1263, 1336, 1946, 2151, 2154
BlsI GCNGC 9 cut(s) 27, 557, 710, 1012, 1264, 1337, 1947, 2152, 2155
Bme1390I CCNGG 6 cut(s) 327, 341, 420, 1029, 1746, 2454
Bme18I GGWCC 2 cut(s) 640, 2381
BmgT120I GGNCC 3 cut(s) 535, 640, 2381
BmiI GGNNCC 6 cut(s) 586, 625, 642, 1026, 1533, 1743
BmrFI CCNGG 6 cut(s) 327, 341, 420, 1029, 1746, 2454
BmrI ACTGGG 1 cut(s) 2321
BmsI GCATC 4 cut(s) 376, 1552, 2137, 2206
BmuI ACTGGG 1 cut(s) 2321
BpiI GAAGAC 2 cut(s) 142, 1448
BpmI CTGGAG 2 cut(s) 1336, 2370
BpuEI CTTGAG 2 cut(s) 1865, 2260
BpuMI CCSGG 2 cut(s) 341, 420
Bsa29I ATCGAT 1 cut(s) 2589
BsaBI GATNNNNATC 1 cut(s) 1542
BsaI GGTCTC 1 cut(s) 281
BsaJI CCNNGG 5 cut(s) 340, 594, 2354, 2453, 2540
BsaWI WCCGGW 1 cut(s) 931
BsaXI ACNNNNNCTCC 2 cut(s) 1775, 1805
Bsc4I CCNNNNNNNGG 6 cut(s) 118, 425, 595, 740, 794, 1295
Bse1I ACTGG 7 cut(s) 356, 411, 883, 1353, 2327, 2535, 2629
Bse3DI GCAATG 1 cut(s) 11
Bse8I GATNNNNATC 1 cut(s) 1542
BseBI CCWGG 4 cut(s) 327, 1029, 1746, 2454
BseCI ATCGAT 1 cut(s) 2589
BseDI CCNNGG 5 cut(s) 340, 594, 2354, 2453, 2540
BseGI GGATG 7 cut(s) 163, 196, 550, 703, 1204, 1710, 2152
BseJI GATNNNNATC 1 cut(s) 1542
BseLI CCNNNNNNNGG 6 cut(s) 118, 425, 595, 740, 794, 1295
BseMI GCAATG 1 cut(s) 11
BseMII CTCAG 3 cut(s) 591, 1767, 2132
BseNI ACTGG 7 cut(s) 356, 411, 883, 1353, 2327, 2535, 2629
BseRI GAGGAG 6 cut(s) 93, 185, 524, 1793, 1796, 2483
BseSI GKGCMC 3 cut(s) 113, 589, 2140
BseXI GCAGC 7 cut(s) 37, 567, 997, 1274, 1347, 2137, 2165
BseYI CCCAGC 2 cut(s) 125, 2491
BsgI GTGCAG 2 cut(s) 366, 1346
Bsh1236I CGCG 2 cut(s) 2466, 2643
BshFI GGCC 8 cut(s) 536, 716, 842, 1343, 1472, 2115, 2517, 2628
BshNI GGYRCC 1 cut(s) 584
BshVI ATCGAT 1 cut(s) 2589
BsiHKAI GWGCWC 1 cut(s) 1155
BsiSI CCGG 5 cut(s) 340, 419, 932, 2496, 2514
BslFI GGGAC 4 cut(s) 353, 1786, 2057, 2309
BslI CCNNNNNNNGG 6 cut(s) 118, 425, 595, 740, 794, 1295
BsmAI GTCTC 3 cut(s) 281, 1167, 1562
BsmFI GGGAC 4 cut(s) 353, 1786, 2057, 2309
BsnI GGCC 8 cut(s) 536, 716, 842, 1343, 1472, 2115, 2517, 2628
Bso31I GGTCTC 1 cut(s) 281
Bsp1286I GDGCHC 4 cut(s) 113, 589, 1155, 2140
Bsp143I GATC 8 cut(s) 39, 352, 623, 1072, 1741, 1899, 2126, 2590
BspACI CCGC 9 cut(s) 28, 87, 155, 363, 708, 1945, 2185, 2293, 2609
BspANI GGCC 8 cut(s) 536, 716, 842, 1343, 1472, 2115, 2517, 2628
BspCNI CTCAG 3 cut(s) 592, 1768, 2133
BspDI ATCGAT 1 cut(s) 2589
BspFNI CGCG 2 cut(s) 2466, 2643
BspHI TCATGA 4 cut(s) 1039, 1165, 1420, 1797
BspLI GGNNCC 6 cut(s) 586, 625, 642, 1026, 1533, 1743
BspMAI CTGCAG 3 cut(s) 1671, 2080, 2155
BspMI ACCTGC 1 cut(s) 1939
BspPI GGATC 7 cut(s) 347, 618, 631, 1736, 1749, 2134, 2585
BspQI GCTCTTC 2 cut(s) 290, 1703
BspT107I GGYRCC 1 cut(s) 584
BspTNI GGTCTC 1 cut(s) 281
BsrBI CCGCTC 1 cut(s) 708
BsrDI GCAATG 1 cut(s) 11
BsrI ACTGG 7 cut(s) 356, 411, 883, 1353, 2327, 2535, 2629
BssECI CCNNGG 5 cut(s) 340, 594, 2354, 2453, 2540
BssMI GATC 8 cut(s) 39, 352, 623, 1072, 1741, 1899, 2126, 2590
BssSI CACGAG 2 cut(s) 912, 2157
BssT1I CCWWGG 1 cut(s) 2540
Bst2BI CACGAG 2 cut(s) 912, 2157
Bst2UI CCWGG 4 cut(s) 327, 1029, 1746, 2454
Bst4CI ACNGT 5 cut(s) 121, 637, 1115, 1990, 2658
Bst6I CTCTTC 3 cut(s) 290, 1703, 2076
BstAPI GCANNNNNTGC 2 cut(s) 1285, 2159
BstC8I GCNNGC 4 cut(s) 832, 1053, 1305, 1474
BstDEI CTNAG 5 cut(s) 600, 1714, 1776, 2141, 2446
BstDSI CCRYGG 1 cut(s) 2354
BstEII GGTNACC 1 cut(s) 952
BstF5I GGATG 7 cut(s) 163, 196, 550, 703, 1204, 1710, 2152
BstFNI CGCG 2 cut(s) 2466, 2643
BstHHI GCGC 2 cut(s) 2466, 2643
BstKTI GATC 8 cut(s) 42, 355, 626, 1075, 1744, 1902, 2129, 2593
BstMAI GTCTC 3 cut(s) 281, 1167, 1562
BstMBI GATC 8 cut(s) 39, 352, 623, 1072, 1741, 1899, 2126, 2590
BstNI CCWGG 4 cut(s) 327, 1029, 1746, 2454
BstNSI RCATGY 2 cut(s) 1935, 2480
BstPI GGTNACC 1 cut(s) 952
BstSCI CCNGG 6 cut(s) 325, 339, 418, 1027, 1744, 2452
BstSFI CTRYAG 3 cut(s) 1667, 2076, 2151
BstSLI GKGCMC 3 cut(s) 113, 589, 2140
BstUI CGCG 2 cut(s) 2466, 2643
BstV1I GCAGC 7 cut(s) 37, 567, 997, 1274, 1347, 2137, 2165
BstV2I GAAGAC 2 cut(s) 142, 1448
BstX2I RGATCY 2 cut(s) 623, 1741
BstXI CCANNNNNNTGG 1 cut(s) 2394
BstYI RGATCY 2 cut(s) 623, 1741
Bsu15I ATCGAT 1 cut(s) 2589
BsuI GTATCC 1 cut(s) 2353
BsuRI GGCC 8 cut(s) 536, 716, 842, 1343, 1472, 2115, 2517, 2628
BsuTUI ATCGAT 1 cut(s) 2589
BtgI CCRYGG 1 cut(s) 2354
BtsCI GGATG 7 cut(s) 163, 196, 550, 703, 1204, 1710, 2152
BtsI GCAGTG 2 cut(s) 813, 874
BveI ACCTGC 1 cut(s) 1939
Cac8I GCNNGC 4 cut(s) 832, 1053, 1305, 1474
CaiI CAGNNNCTG 2 cut(s) 1751, 2333
CciI TCATGA 4 cut(s) 1039, 1165, 1420, 1797
CfoI GCGC 2 cut(s) 2466, 2643
Cfr13I GGNCC 3 cut(s) 535, 640, 2381
ClaI ATCGAT 1 cut(s) 2589
CseI GACGC 1 cut(s) 2508
Csp6I GTAC 4 cut(s) 429, 1604, 1983, 2244
CspCI CAANNNNNGTGG 2 cut(s) 1891, 1926
CviQI GTAC 4 cut(s) 429, 1604, 1983, 2244
DdeI CTNAG 5 cut(s) 600, 1714, 1776, 2141, 2446
DpnI GATC 8 cut(s) 41, 354, 625, 1074, 1743, 1901, 2128, 2592
DpnII GATC 8 cut(s) 39, 352, 623, 1072, 1741, 1899, 2126, 2590
DraIII CACNNNGTG 1 cut(s) 637
EaeI YGGCCR 3 cut(s) 2113, 2515, 2626
Eam1104I CTCTTC 3 cut(s) 290, 1703, 2076
EarI CTCTTC 3 cut(s) 290, 1703, 2076
EciI GGCGGA 1 cut(s) 170
Ecl136II GAGCTC 1 cut(s) 1153
Eco130I CCWWGG 1 cut(s) 2540
Eco24I GRGCYC 1 cut(s) 1155
Eco31I GGTCTC 1 cut(s) 281
Eco47I GGWCC 2 cut(s) 640, 2381
Eco53kI GAGCTC 1 cut(s) 1153
Eco57I CTGAAG 4 cut(s) 402, 560, 713, 1017
Eco91I GGTNACC 1 cut(s) 952
EcoICRI GAGCTC 1 cut(s) 1153
EcoO109I RGGNCCY 1 cut(s) 535
EcoO65I GGTNACC 1 cut(s) 952
EcoRI GAATTC 2 cut(s) 197, 1838
EcoRII CCWGG 4 cut(s) 325, 1027, 1744, 2452
EcoT14I CCWWGG 1 cut(s) 2540
EcoT22I ATGCAT 1 cut(s) 1545
EcoT38I GRGCYC 1 cut(s) 1155
ErhI CCWWGG 1 cut(s) 2540
FalI AAGNNNNNCTT 2 cut(s) 1715, 1747
FaqI GGGAC 4 cut(s) 353, 1786, 2057, 2309
FauNDI CATATG 2 cut(s) 973, 2310
FbaI TGATCA 1 cut(s) 1899
FblI GTMKAC 1 cut(s) 966
Fnu4HI GCNGC 9 cut(s) 26, 556, 709, 1011, 1263, 1336, 1946, 2151, 2154
FokI GGATG 7 cut(s) 170, 203, 557, 710, 1211, 1717, 2159
FriOI GRGCYC 1 cut(s) 1155
Fsp4HI GCNGC 9 cut(s) 26, 556, 709, 1011, 1263, 1336, 1946, 2151, 2154
FspBI CTAG 3 cut(s) 1101, 1109, 2088
GlaI GCGC 2 cut(s) 2465, 2642
GluI GCNGC 9 cut(s) 26, 556, 709, 1011, 1263, 1336, 1946, 2151, 2154
GsaI CCCAGC 2 cut(s) 129, 2495
GsuI CTGGAG 2 cut(s) 1336, 2370
HaeIII GGCC 8 cut(s) 536, 716, 842, 1343, 1472, 2115, 2517, 2628
HapII CCGG 5 cut(s) 340, 419, 932, 2496, 2514
HgaI GACGC 1 cut(s) 2508
HhaI GCGC 2 cut(s) 2466, 2643
Hin6I GCGC 2 cut(s) 2464, 2641
HinP1I GCGC 2 cut(s) 2464, 2641
HincII GTYRAC 1 cut(s) 565
HindII GTYRAC 1 cut(s) 565
HinfI GANTC 9 cut(s) 461, 604, 1376, 1574, 1766, 1958, 2098, 2315, 2586
HpaII CCGG 5 cut(s) 340, 419, 932, 2496, 2514
Hpy188I TCNGA 6 cut(s) 1381, 1579, 1955, 2006, 2488, 2662
Hpy188III TCNNGA 9 cut(s) 227, 380, 914, 1040, 1166, 1421, 1547, 1798, 2583
HpyCH4III ACNGT 5 cut(s) 121, 637, 1115, 1990, 2658
HpyCH4IV ACGT 3 cut(s) 1693, 1790, 1979
HpyF3I CTNAG 5 cut(s) 600, 1714, 1776, 2141, 2446
HpySE526I ACGT 3 cut(s) 1693, 1790, 1979
HspAI GCGC 2 cut(s) 2464, 2641
Ksp22I TGATCA 1 cut(s) 1899
Kzo9I GATC 8 cut(s) 39, 352, 623, 1072, 1741, 1899, 2126, 2590
LguI GCTCTTC 2 cut(s) 290, 1703
LmnI GCTCC 6 cut(s) 775, 901, 1024, 1150, 1531, 1783
Lsp1109I GCAGC 7 cut(s) 37, 567, 997, 1274, 1347, 2137, 2165
LweI GCATC 4 cut(s) 376, 1552, 2137, 2206
MaeI CTAG 3 cut(s) 1101, 1109, 2088
MaeII ACGT 3 cut(s) 1693, 1790, 1979
MaeIII GTNAC 4 cut(s) 952, 1924, 2258, 2614
MalI GATC 8 cut(s) 41, 354, 625, 1074, 1743, 1901, 2128, 2592
MbiI CCGCTC 1 cut(s) 708
MboI GATC 8 cut(s) 39, 352, 623, 1072, 1741, 1899, 2126, 2590
MflI RGATCY 2 cut(s) 623, 1741
MhlI GDGCHC 4 cut(s) 113, 589, 1155, 2140
MlsI TGGCCA 2 cut(s) 2115, 2628
MluNI TGGCCA 2 cut(s) 2115, 2628
MlyI GAGTC 2 cut(s) 613, 1775
MmeI TCCRAC 5 cut(s) 655, 1120, 1669, 1933, 2191
Mox20I TGGCCA 2 cut(s) 2115, 2628
Mph1103I ATGCAT 1 cut(s) 1545
MroXI GAANNNNTTC 1 cut(s) 1730
MscI TGGCCA 2 cut(s) 2115, 2628
MseI TTAA 6 cut(s) 1871, 2271, 2406, 2421, 2559, 2668
MslI CAYNNNNRTG 8 cut(s) 225, 795, 1044, 1170, 1368, 1425, 1497, 2058
Msp20I TGGCCA 2 cut(s) 2115, 2628
MspA1I CMGCKG 2 cut(s) 28, 365
MspI CCGG 5 cut(s) 340, 419, 932, 2496, 2514
MspR9I CCNGG 6 cut(s) 327, 341, 420, 1029, 1746, 2454
MvaI CCWGG 4 cut(s) 327, 1029, 1746, 2454
MvnI CGCG 2 cut(s) 2466, 2643
NciI CCSGG 2 cut(s) 341, 420
NdeI CATATG 2 cut(s) 973, 2310
NdeII GATC 8 cut(s) 39, 352, 623, 1072, 1741, 1899, 2126, 2590
NlaIV GGNNCC 6 cut(s) 586, 625, 642, 1026, 1533, 1743
NmeAIII GCCGAG 1 cut(s) 619
NmuCI GTSAC 3 cut(s) 952, 2258, 2614
NsiI ATGCAT 1 cut(s) 1545
NspI RCATGY 2 cut(s) 1935, 2480
OliI CACNNNNGTG 1 cut(s) 1368
PagI TCATGA 4 cut(s) 1039, 1165, 1420, 1797
PciSI GCTCTTC 2 cut(s) 290, 1703
PdmI GAANNNNTTC 1 cut(s) 1730
PfeI GAWTC 7 cut(s) 461, 1376, 1574, 1958, 2098, 2315, 2586
PflMI CCANNNNNTGG 1 cut(s) 740
PkrI GCNGC 9 cut(s) 27, 557, 710, 1012, 1264, 1337, 1947, 2152, 2155
PleI GAGTC 2 cut(s) 612, 1774
PpsI GAGTC 2 cut(s) 612, 1774
PshBI ATTAAT 1 cut(s) 2406
Psp124BI GAGCTC 1 cut(s) 1155
Psp6I CCWGG 4 cut(s) 325, 1027, 1744, 2452
PspEI GGTNACC 1 cut(s) 952
PspFI CCCAGC 2 cut(s) 125, 2491
PspGI CCWGG 4 cut(s) 325, 1027, 1744, 2452
PspN4I GGNNCC 6 cut(s) 586, 625, 642, 1026, 1533, 1743
PspPI GGNCC 3 cut(s) 535, 640, 2381
PstI CTGCAG 3 cut(s) 1671, 2080, 2155
PstNI CAGNNNCTG 2 cut(s) 1751, 2333
PsuI RGATCY 2 cut(s) 623, 1741
RsaI GTAC 4 cut(s) 430, 1605, 1984, 2245
RsaNI GTAC 4 cut(s) 429, 1604, 1983, 2244
RseI CAYNNNNRTG 8 cut(s) 225, 795, 1044, 1170, 1368, 1425, 1497, 2058
SacI GAGCTC 1 cut(s) 1155
SapI GCTCTTC 2 cut(s) 290, 1703
SaqAI TTAA 6 cut(s) 1871, 2271, 2406, 2421, 2559, 2668
SatI GCNGC 9 cut(s) 26, 556, 709, 1011, 1263, 1336, 1946, 2151, 2154
Sau3AI GATC 8 cut(s) 39, 352, 623, 1072, 1741, 1899, 2126, 2590
Sau96I GGNCC 3 cut(s) 535, 640, 2381
SchI GAGTC 2 cut(s) 613, 1775
ScrFI CCNGG 6 cut(s) 327, 341, 420, 1029, 1746, 2454
SduI GDGCHC 4 cut(s) 113, 589, 1155, 2140
SfaNI GCATC 4 cut(s) 376, 1552, 2137, 2206
SfcI CTRYAG 3 cut(s) 1667, 2076, 2151
SinI GGWCC 2 cut(s) 640, 2381
SmiMI CAYNNNNRTG 8 cut(s) 225, 795, 1044, 1170, 1368, 1425, 1497, 2058
SmlI CTYRAG 2 cut(s) 1880, 2239
SmoI CTYRAG 2 cut(s) 1880, 2239
SsiI CCGC 9 cut(s) 28, 87, 155, 363, 708, 1945, 2185, 2293, 2609
SspMI CTAG 3 cut(s) 1101, 1109, 2088
SstI GAGCTC 1 cut(s) 1155
StyD4I CCNGG 6 cut(s) 325, 339, 418, 1027, 1744, 2452
StyI CCWWGG 1 cut(s) 2540
TaaI ACNGT 5 cut(s) 121, 637, 1115, 1990, 2658
TaiI ACGT 3 cut(s) 1696, 1793, 1982
TaqI TCGA 4 cut(s) 1155, 1560, 2582, 2589
TatI WGTACW 1 cut(s) 1982
TauI GCSGC 2 cut(s) 711, 1948
TfiI GAWTC 7 cut(s) 461, 1376, 1574, 1958, 2098, 2315, 2586
Tru1I TTAA 6 cut(s) 1871, 2271, 2406, 2421, 2559, 2668
Tru9I TTAA 6 cut(s) 1871, 2271, 2406, 2421, 2559, 2668
TseFI GTSAC 3 cut(s) 952, 2258, 2614
TseI GCWGC 7 cut(s) 25, 555, 1010, 1262, 1335, 2150, 2153
Tsp45I GTSAC 3 cut(s) 952, 2258, 2614
TspGWI ACGGA 4 cut(s) 96, 154, 1073, 1199
Van91I CCANNNNNTGG 1 cut(s) 740
VpaK11BI GGWCC 2 cut(s) 640, 2381
VspI ATTAAT 1 cut(s) 2406
XapI RAATTY 7 cut(s) 197, 375, 1831, 1838, 1873, 2008, 2033
XceI RCATGY 2 cut(s) 1935, 2480
XmiI GTMKAC 1 cut(s) 966
XmnI GAANNNNTTC 1 cut(s) 1730
XspI CTAG 3 cut(s) 1101, 1109, 2088
Zsp2I ATGCAT 1 cut(s) 1545
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.