pycom16g26250

AT-rich interactive domain-containing protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
Physical Location & Seq
Reverse (-)
28571641 .. 28592827
21187 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom16g26250.1

Sequence Viewer

Length: 1233 bp
ATGGAGGACAAGGAAAAGTTGCACAATGAATCCAATACGAAACAGCACGAGTCCAAGGAGGATCAAACTGGGCAGCTACCTCAATTGGAAACCGACGATCAAGTTATGAGACATGTTACTGGGATCAACCCGCCTACTCATGAGGCAAATGTTGCTGATGTTAAAGTCAATGAGGCTCTTCTTAGTGATGTGCCCATACAACACAAGGACAATGCCAGCAATGCCAGCAATGCCAGTGTTAGGAATCAACTCAAAACTGTAGATAAACAAGTGGGAGTAGGGGAGTTGAAGAATGGGTTGAACGATACCGAGATGGTTGAGGCTGAGGAATCTGGGGACGGGACACCATCGCAGCAAGCAGCATTTACGAAGGAGGTGGAAAGTTTCTATAGGGAGAATGCCTTAGAGTTTAAGGCCCCAAAGTTTTATGGAGAGCCGCTGAATTGCCTTAAGTTATGGAGAGCTGTTACTAGATTGGGTGGCTATGACGTGGTGACTGCATCAAAGTTGTGGCGGCAAGTAGGAGAGTCCTTCCATCCCCCCAAGACGTGCACAACAGTATCTTGGACATTCCGCATATTTTATGAGAAGGCACTTTTGGAATATGAGAAGCATAAGAGGAAAATTGGTGAGCTTCGACTTCCTGTGGGACCCATCACTCAATCTGCAAGTGTTGAGAAGGAGGCAAGTGCTCATCAAGCTCTTGGATCGGTCAGGGCACGAAGAGATGCTGCAGCTCGTGCAATGCAGGGTTGGCATGCACAGCGTCTTGTTGGATATGGTGACGTTGCCGAGCCTATTATTAAGGACAAGCACTTGAGTTCTACCCCAAAGCGTGAAAAGAGTCTTAAAAGCATTGGTTCGGTTAAACACAGGCCACCAACAAACGTGGAGCTTGCAACTACAAATATTGAGGCAGATAAGCAGATAGTCACGACTGTTGTTGATCTTGGACCTCCAGCTGATTGGGTGAAGGTCAATGTACGAGAAACTAAAGACTGCTTTGAGGTATATGCTTTGGTTCCTGGTCTTCTGCGTGAGGAGGTCCGAGTTCAATCAGATCCAGCTGGACGTCTTGTTATAACAGGTCAACCAGAGCAGATTGACAATCCTTGGGGTATTACACCATTTAAGAAGGTTGTGAGCTTACCTGGCAAAATTGATCCGCTCCAAACATCTGCTGTGGTTAGCCTGCATGGGCGGTTATTCGTGCGTGTTCCTTTTGAACAGTGA

Protein Analysis

411

Amino Acids

45.61

Weight (kDa)

6.66

Isoelectric Point (pI)

33.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ARID PF01388 119 - 203 8.1e-18 ARID/BRIGHT DNA binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1082
AatII GACGTC 1 cut(s) 1075
AccBSI CCGCTC 1 cut(s) 1168
AciI CCGC 6 cut(s) 131, 437, 514, 574, 1166, 1201
AclWI GGATC 5 cut(s) 69, 131, 715, 1055, 1157
AcyI GRCGYC 1 cut(s) 1072
AfaI GTAC 1 cut(s) 984
AfiI CCNNNNNNNGG 1 cut(s) 240
AflII CTTAAG 1 cut(s) 449
AflIII ACRYGT 1 cut(s) 112
AgsI TTSAA 4 cut(s) 289, 301, 1055, 1226
AjiI CACGTC 2 cut(s) 490, 549
AjnI CCWGG 2 cut(s) 1024, 1150
AjuI GAANNNNNNNTTGG 2 cut(s) 581, 613
AluBI AGCT 9 cut(s) 76, 464, 634, 701, 737, 895, 962, 1067, 1146
AluI AGCT 9 cut(s) 76, 464, 634, 701, 737, 895, 962, 1067, 1146
Alw21I GWGCWC 2 cut(s) 554, 694
Alw26I GTCTC 1 cut(s) 103
Alw44I GTGCAC 1 cut(s) 550
AlwI GGATC 5 cut(s) 69, 131, 715, 1055, 1157
AoxI GGCC 2 cut(s) 414, 875
ApaLI GTGCAC 1 cut(s) 550
ApeKI GCWGC 5 cut(s) 73, 352, 359, 731, 734
AspS9I GGNCC 4 cut(s) 415, 650, 953, 1045
AsuHPI GGTGA 4 cut(s) 505, 641, 794, 982
AvaII GGWCC 3 cut(s) 650, 953, 1045
BaeGI GKGCMC 3 cut(s) 195, 554, 721
BaeI ACNNNNGTAYC 2 cut(s) 543, 576
BauI CACGAG 2 cut(s) 47, 738
BbsI GAAGAC 1 cut(s) 1022
Bbv12I GWGCWC 2 cut(s) 554, 694
BbvCI CCTCAGC 1 cut(s) 324
BbvI GCAGC 5 cut(s) 85, 364, 371, 718, 746
BccI CCATC 4 cut(s) 307, 355, 543, 662
BciT130I CCWGG 2 cut(s) 1026, 1152
BcoDI GTCTC 1 cut(s) 103
BfaI CTAG 1 cut(s) 471
BfmI CTRYAG 3 cut(s) 258, 388, 732
BfrI CTTAAG 1 cut(s) 449
BisI GCNGC 7 cut(s) 74, 353, 360, 437, 515, 732, 735
BlsI GCNGC 7 cut(s) 75, 354, 361, 438, 516, 733, 736
Bme1390I CCNGG 2 cut(s) 1026, 1152
Bme18I GGWCC 3 cut(s) 650, 953, 1045
BmgBI CACGTC 2 cut(s) 490, 549
BmgT120I GGNCC 4 cut(s) 415, 650, 953, 1045
BmiI GGNNCC 4 cut(s) 417, 651, 652, 1023
BmrFI CCNGG 2 cut(s) 1026, 1152
BmrI ACTGGG 2 cut(s) 78, 129
BmsI GCATC 2 cut(s) 509, 718
BmuI ACTGGG 2 cut(s) 78, 129
BpiI GAAGAC 1 cut(s) 1022
BpmI CTGGAG 1 cut(s) 942
Bpu10I CCTNAGC 1 cut(s) 324
BpuEI CTTGAG 1 cut(s) 838
BsaHI GRCGYC 1 cut(s) 1072
BsaJI CCNNGG 2 cut(s) 54, 1112
Bsc4I CCNNNNNNNGG 1 cut(s) 240
Bse1I ACTGG 3 cut(s) 73, 124, 234
Bse3DI GCAATG 3 cut(s) 226, 235, 750
BseBI CCWGG 2 cut(s) 1026, 1152
BseDI CCNNGG 2 cut(s) 54, 1112
BseGI GGATG 1 cut(s) 535
BseLI CCNNNNNNNGG 1 cut(s) 240
BseMI GCAATG 3 cut(s) 226, 235, 750
BseMII CTCAG 1 cut(s) 315
BseNI ACTGG 3 cut(s) 73, 124, 234
BseRI GAGGAG 1 cut(s) 1055
BseSI GKGCMC 3 cut(s) 195, 554, 721
BseXI GCAGC 5 cut(s) 85, 364, 371, 718, 746
BshFI GGCC 2 cut(s) 416, 877
BsiHKAI GWGCWC 2 cut(s) 554, 694
BslFI GGGAC 3 cut(s) 350, 355, 663
BslI CCNNNNNNNGG 1 cut(s) 240
BsmAI GTCTC 1 cut(s) 103
BsmFI GGGAC 3 cut(s) 350, 355, 663
BsmI GAATGC 1 cut(s) 403
BsnI GGCC 2 cut(s) 416, 877
Bsp1286I GDGCHC 4 cut(s) 195, 554, 694, 721
Bsp143I GATC 7 cut(s) 61, 97, 123, 707, 946, 1060, 1162
BspACI CCGC 6 cut(s) 131, 437, 514, 574, 1166, 1201
BspANI GGCC 2 cut(s) 416, 877
BspCNI CTCAG 1 cut(s) 316
BspHI TCATGA 1 cut(s) 139
BspLI GGNNCC 4 cut(s) 417, 651, 652, 1023
BspMAI CTGCAG 1 cut(s) 736
BspPI GGATC 5 cut(s) 69, 131, 715, 1055, 1157
BspQI GCTCTTC 1 cut(s) 183
BspTI CTTAAG 1 cut(s) 449
BsrBI CCGCTC 1 cut(s) 1168
BsrDI GCAATG 3 cut(s) 226, 235, 750
BsrI ACTGG 3 cut(s) 73, 124, 234
BssECI CCNNGG 2 cut(s) 54, 1112
BssMI GATC 7 cut(s) 61, 97, 123, 707, 946, 1060, 1162
BssNI GRCGYC 1 cut(s) 1072
BssSI CACGAG 2 cut(s) 47, 738
BssT1I CCWWGG 2 cut(s) 54, 1112
Bst2BI CACGAG 2 cut(s) 47, 738
Bst2UI CCWGG 2 cut(s) 1026, 1152
Bst4CI ACNGT 4 cut(s) 259, 559, 940, 1230
Bst6I CTCTTC 2 cut(s) 183, 718
BstACI GRCGYC 1 cut(s) 1072
BstAFI CTTAAG 1 cut(s) 449
BstAPI GCANNNNNTGC 2 cut(s) 152, 740
BstC8I GCNNGC 6 cut(s) 217, 226, 357, 759, 897, 1193
BstDEI CTNAG 3 cut(s) 182, 324, 403
BstF5I GGATG 1 cut(s) 535
BstKTI GATC 7 cut(s) 64, 100, 126, 710, 949, 1063, 1165
BstMAI GTCTC 1 cut(s) 103
BstMBI GATC 7 cut(s) 61, 97, 123, 707, 946, 1060, 1162
BstMWI GCNNNNNNNGC 9 cut(s) 152, 221, 225, 230, 698, 740, 754, 763, 1152
BstNI CCWGG 2 cut(s) 1026, 1152
BstNSI RCATGY 2 cut(s) 116, 761
BstSCI CCNGG 2 cut(s) 1024, 1150
BstSFI CTRYAG 3 cut(s) 258, 388, 732
BstSLI GKGCMC 3 cut(s) 195, 554, 721
BstV1I GCAGC 5 cut(s) 85, 364, 371, 718, 746
BstV2I GAAGAC 1 cut(s) 1022
BstX2I RGATCY 1 cut(s) 1060
BstXI CCANNNNNNTGG 1 cut(s) 966
BstYI RGATCY 1 cut(s) 1060
BsuRI GGCC 2 cut(s) 416, 877
BtgZI GCGATG 1 cut(s) 333
BtrI CACGTC 2 cut(s) 490, 549
BtsCI GGATG 1 cut(s) 535
BtsIMutI CAGTG 1 cut(s) 241
Cac8I GCNNGC 6 cut(s) 217, 226, 357, 759, 897, 1193
CciI TCATGA 1 cut(s) 139
Cfr13I GGNCC 4 cut(s) 415, 650, 953, 1045
CseI GACGC 1 cut(s) 755
Csp6I GTAC 1 cut(s) 983
CspCI CAANNNNNGTGG 2 cut(s) 870, 905
CviAII CATG 4 cut(s) 113, 140, 758, 1196
CviQI GTAC 1 cut(s) 983
DdeI CTNAG 3 cut(s) 182, 324, 403
DpnI GATC 7 cut(s) 63, 99, 125, 709, 948, 1062, 1164
DpnII GATC 7 cut(s) 61, 97, 123, 707, 946, 1060, 1162
Eam1104I CTCTTC 2 cut(s) 183, 718
EarI CTCTTC 2 cut(s) 183, 718
Eco130I CCWWGG 2 cut(s) 54, 1112
Eco47I GGWCC 3 cut(s) 650, 953, 1045
EcoO109I RGGNCCY 2 cut(s) 415, 650
EcoRII CCWGG 2 cut(s) 1024, 1150
EcoT14I CCWWGG 2 cut(s) 54, 1112
ErhI CCWWGG 2 cut(s) 54, 1112
FaeI CATG 4 cut(s) 116, 143, 761, 1199
FaqI GGGAC 3 cut(s) 350, 355, 663
FatI CATG 4 cut(s) 112, 139, 757, 1195
FauI CCCGC 1 cut(s) 138
Fnu4HI GCNGC 7 cut(s) 74, 353, 360, 437, 515, 732, 735
FokI GGATG 1 cut(s) 522
Fsp4HI GCNGC 7 cut(s) 74, 353, 360, 437, 515, 732, 735
FspBI CTAG 1 cut(s) 471
GluI GCNGC 7 cut(s) 74, 353, 360, 437, 515, 732, 735
GsuI CTGGAG 1 cut(s) 942
HaeIII GGCC 2 cut(s) 416, 877
HgaI GACGC 1 cut(s) 755
Hin1I GRCGYC 1 cut(s) 1072
Hin1II CATG 4 cut(s) 116, 143, 761, 1199
HincII GTYRAC 1 cut(s) 1091
HindII GTYRAC 1 cut(s) 1091
HinfI GANTC 6 cut(s) 29, 50, 244, 329, 527, 844
HphI GGTGA 4 cut(s) 505, 641, 794, 982
Hpy166II GTNNAC 2 cut(s) 552, 1091
Hpy188I TCNGA 2 cut(s) 1049, 1060
Hpy188III TCNNGA 2 cut(s) 140, 934
Hpy8I GTNNAC 2 cut(s) 552, 1091
Hpy99I CGWCG 1 cut(s) 98
HpyAV CCTTC 6 cut(s) 364, 541, 583, 673, 967, 1129
HpyCH4III ACNGT 4 cut(s) 259, 559, 940, 1230
HpyCH4IV ACGT 5 cut(s) 489, 548, 786, 888, 1072
HpyF10VI GCNNNNNNNGC 9 cut(s) 152, 221, 225, 230, 698, 740, 754, 763, 1152
HpyF3I CTNAG 3 cut(s) 182, 324, 403
HpySE526I ACGT 5 cut(s) 489, 548, 786, 888, 1072
Hsp92I GRCGYC 1 cut(s) 1072
Hsp92II CATG 4 cut(s) 116, 143, 761, 1199
KflI GGGWCCC 1 cut(s) 650
Kzo9I GATC 7 cut(s) 61, 97, 123, 707, 946, 1060, 1162
LguI GCTCTTC 1 cut(s) 183
LmnI GCTCC 2 cut(s) 892, 1173
Lsp1109I GCAGC 5 cut(s) 85, 364, 371, 718, 746
LweI GCATC 2 cut(s) 509, 718
MaeI CTAG 1 cut(s) 471
MaeII ACGT 5 cut(s) 489, 548, 786, 888, 1072
MaeIII GTNAC 5 cut(s) 115, 466, 493, 782, 931
MalI GATC 7 cut(s) 63, 99, 125, 709, 948, 1062, 1164
MbiI CCGCTC 1 cut(s) 1168
MboI GATC 7 cut(s) 61, 97, 123, 707, 946, 1060, 1162
MboII GAAGA 4 cut(s) 170, 301, 735, 1022
MfeI CAATTG 1 cut(s) 83
MflI RGATCY 1 cut(s) 1060
MhlI GDGCHC 4 cut(s) 195, 554, 694, 721
MluCI AATT 4 cut(s) 83, 442, 624, 1158
MlyI GAGTC 3 cut(s) 59, 536, 853
MmeI TCCRAC 1 cut(s) 754
MseI TTAA 7 cut(s) 162, 411, 450, 804, 849, 867, 1131
MspA1I CMGCKG 3 cut(s) 439, 962, 1067
MspCI CTTAAG 1 cut(s) 449
MspR9I CCNGG 2 cut(s) 1026, 1152
MunI CAATTG 1 cut(s) 83
Mva1269I GAATGC 1 cut(s) 403
MvaI CCWGG 2 cut(s) 1026, 1152
MwoI GCNNNNNNNGC 9 cut(s) 152, 221, 225, 230, 698, 740, 754, 763, 1152
NdeII GATC 7 cut(s) 61, 97, 123, 707, 946, 1060, 1162
NlaIII CATG 4 cut(s) 116, 143, 761, 1199
NlaIV GGNNCC 4 cut(s) 417, 651, 652, 1023
NmeAIII GCCGAG 1 cut(s) 817
NmuCI GTSAC 3 cut(s) 493, 782, 931
NspI RCATGY 2 cut(s) 116, 761
PaeI GCATGC 1 cut(s) 761
PagI TCATGA 1 cut(s) 139
PciI ACATGT 1 cut(s) 112
PciSI GCTCTTC 1 cut(s) 183
PctI GAATGC 1 cut(s) 403
PfeI GAWTC 3 cut(s) 29, 244, 329
PkrI GCNGC 7 cut(s) 75, 354, 361, 438, 516, 733, 736
PleI GAGTC 3 cut(s) 58, 535, 852
PpsI GAGTC 3 cut(s) 58, 535, 852
PpuMI RGGWCCY 1 cut(s) 650
PscI ACATGT 1 cut(s) 112
PsiI TTATAA 1 cut(s) 1082
Psp5II RGGWCCY 1 cut(s) 650
Psp6I CCWGG 2 cut(s) 1024, 1150
PspGI CCWGG 2 cut(s) 1024, 1150
PspN4I GGNNCC 4 cut(s) 417, 651, 652, 1023
PspPI GGNCC 4 cut(s) 415, 650, 953, 1045
PspPPI RGGWCCY 1 cut(s) 650
PstI CTGCAG 1 cut(s) 736
PsuI RGATCY 1 cut(s) 1060
PvuII CAGCTG 2 cut(s) 962, 1067
RsaI GTAC 1 cut(s) 984
RsaNI GTAC 1 cut(s) 983
SapI GCTCTTC 1 cut(s) 183
SaqAI TTAA 7 cut(s) 162, 411, 450, 804, 849, 867, 1131
SatI GCNGC 7 cut(s) 74, 353, 360, 437, 515, 732, 735
Sau3AI GATC 7 cut(s) 61, 97, 123, 707, 946, 1060, 1162
Sau96I GGNCC 4 cut(s) 415, 650, 953, 1045
SchI GAGTC 3 cut(s) 59, 536, 853
ScrFI CCNGG 2 cut(s) 1026, 1152
SduI GDGCHC 4 cut(s) 195, 554, 694, 721
SfaNI GCATC 2 cut(s) 509, 718
SfcI CTRYAG 3 cut(s) 258, 388, 732
SinI GGWCC 3 cut(s) 650, 953, 1045
SmlI CTYRAG 2 cut(s) 449, 817
SmoI CTYRAG 2 cut(s) 449, 817
SphI GCATGC 1 cut(s) 761
Sse9I AATT 4 cut(s) 83, 442, 624, 1158
SsiI CCGC 6 cut(s) 131, 437, 514, 574, 1166, 1201
SspI AATATT 1 cut(s) 910
SspMI CTAG 1 cut(s) 471
StyD4I CCNGG 2 cut(s) 1024, 1150
StyI CCWWGG 2 cut(s) 54, 1112
TaaI ACNGT 4 cut(s) 259, 559, 940, 1230
TaiI ACGT 5 cut(s) 492, 551, 789, 891, 1075
TaqI TCGA 1 cut(s) 637
TaqII GACCGA 1 cut(s) 700
TasI AATT 4 cut(s) 83, 442, 624, 1158
TauI GCSGC 2 cut(s) 439, 517
TfiI GAWTC 3 cut(s) 29, 244, 329
Tru1I TTAA 7 cut(s) 162, 411, 450, 804, 849, 867, 1131
Tru9I TTAA 7 cut(s) 162, 411, 450, 804, 849, 867, 1131
TscAI CASTG 1 cut(s) 241
TseFI GTSAC 3 cut(s) 493, 782, 931
TseI GCWGC 5 cut(s) 73, 352, 359, 731, 734
Tsp45I GTSAC 3 cut(s) 493, 782, 931
TspDTI ATGAA 1 cut(s) 42
TspRI CASTG 1 cut(s) 241
Vha464I CTTAAG 1 cut(s) 449
VneI GTGCAC 1 cut(s) 550
VpaK11BI GGWCC 3 cut(s) 650, 953, 1045
XceI RCATGY 2 cut(s) 116, 761
XspI CTAG 1 cut(s) 471
ZraI GACGTC 1 cut(s) 1073
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.