Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004101

Physical Location & Seq

Genomic Coordinates Forward (+)

7925121 .. 7927345

Gene Structure 2225 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G22450.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGGCGGATGCTGTGAACGCTCAAACTCCATCGCTCTCCGAGCAATATCATTTGGAGAAAGAAGTGAAGCAAGACACAAGTGCAAAGCCTGTTGAAGTGAAAGAGGTGGCACCAGAAGTTACTACACAAGCTGAAGAGGTTAAGACGGAGCAAGCTAAGGAAGAATCTCCTGTTGAGGAAGCGGTTTCTGTAGTTGAAGAGAAGTCTGAATCTGCTCCTGAATCAACGGAAGTGGCTTCTGAGGCTCCTGCTGCAGCGGAAGACAATGCTGAAGAGACTCCTGCTGCTGCTGAAGAAAATAATGACGAAAACGCTAGTGAAGAAGTTGCTGAAGAAACCCCTGATGAGATCAAGCTTGAGACAGCTCCTGCTGATTTCCGTTTCCCTACAACAAACCAAACAAGGCATTGTTTCACTCGCTACGTTGAATATCACAGATGTGTAGCTGCTAAGGGTGATGATGCTCCAGAATGCGATAAGTTTGCAAAGTTTTATCGATCTCTTTGCCCCAGCGAATGGGTTGATAGGTGGAACGAGCAAAGAGAAAATGGAACATTCCCTGGTCCTCTACCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006950 GO:0006970 GO:0008150 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009628 GO:0009651 GO:0016020 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0050896 GO:0055035

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04260 ko04714 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04260 map04714 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

COX6B

Protein Analysis

191

Amino Acids

21.19

Weight (kDa)

4.29

Isoelectric Point (pI)

63.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
COX6B	PF02297	127 - 187	1.1e-21	Cytochrome oxidase c subunit VIb

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004101)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22450 AT4G28060 AT5G57815
fragaria_vesca	FvH4_4g10230 FvH4_4g10230 FvH4_5g36690
malus_domestica	MD08G1187700.v1.1 MD13G1274100.v1.1 MD15G1373600.v1.1 MD16G1261200.v1.1
prunus_persica	Prupe.1G098600_v2.0.a1 Prupe.1G098600_v2.0.a1 Prupe.1G098600_v2.0.a1 Prupe.1G522200_v2.0.a1
pyrus_communis	pycom08g16110 pycom15g33470 pycom16g22890
rosa_chinensis	RchiOBHm_Chr4g0405051 RchiOBHm_Chr7g0242671
rosa_laevigata	RLG00000000889
rosa_multiflora	Rmu_sc0000429.1_g000099 Rmu_sc0001744.1_g000012 Rmu_sc0017298.1_g000003
rosa_roxburghii	Rroxscaffold_3G00222600
rosa_rugosa	Rorug04G0052600 Rorug07G0316100
rosa_samantha	Rh4AG127700 Rh7AG471100 Rh7BG441400 Rh7CG488100
rosa_wichuraiana	Rw0G005460 Rw4G010340 Rw7G039250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	109
AccB7I	CCANNNNNTGG	1 cut(s)	516
AciI	CCGC	3 cut(s)	5, 182, 257
AcuI	CTGAAG	4 cut(s)	153, 291, 312, 351
AfiI	CCNNNNNNNGG	1 cut(s)	516
AgsI	TTSAA	3 cut(s)	95, 197, 428
AjnI	CCWGG	1 cut(s)	559
AleI	CACNNNNGTG	1 cut(s)	438
AluBI	AGCT	5 cut(s)	131, 155, 355, 365, 446
AluI	AGCT	5 cut(s)	131, 155, 355, 365, 446
Alw26I	GTCTC	2 cut(s)	269, 353
AlwNI	CAGNNNCTG	1 cut(s)	368
ApeKI	GCWGC	5 cut(s)	251, 254, 284, 287, 446
AspS9I	GGNCC	1 cut(s)	563
AsuHPI	GGTGA	1 cut(s)	467
AvaII	GGWCC	1 cut(s)	563
BanI	GGYRCC	1 cut(s)	109
BbsI	GAAGAC	1 cut(s)	267
BbvI	GCAGC	5 cut(s)	238, 266, 271, 274, 433
BccI	CCATC	1 cut(s)	37
BcgI	CGANNNNNNTGC	4 cut(s)	464, 486, 498, 520
BciT130I	CCWGG	1 cut(s)	561
BcoDI	GTCTC	2 cut(s)	269, 353
BfaI	CTAG	1 cut(s)	315
BfmI	CTRYAG	2 cut(s)	189, 252
BisI	GCNGC	5 cut(s)	252, 255, 285, 288, 447
BlsI	GCNGC	5 cut(s)	253, 256, 286, 289, 448
Bme1390I	CCNGG	1 cut(s)	561
Bme18I	GGWCC	1 cut(s)	563
BmgT120I	GGNCC	1 cut(s)	563
BmiI	GGNNCC	2 cut(s)	111, 246
BmrFI	CCNGG	1 cut(s)	561
BmsI	GCATC	1 cut(s)	451
BpiI	GAAGAC	1 cut(s)	267
BpmI	CTGGAG	1 cut(s)	450
Bpu10I	CCTNAGC	2 cut(s)	156, 450
BpuEI	CTTGAG	1 cut(s)	377
Bsa29I	ATCGAT	1 cut(s)	496
BsaJI	CCNNGG	1 cut(s)	559
Bsc4I	CCNNNNNNNGG	1 cut(s)	516
BseBI	CCWGG	1 cut(s)	561
BseCI	ATCGAT	1 cut(s)	496
BseDI	CCNNGG	1 cut(s)	559
BseGI	GGATG	1 cut(s)	13
BseLI	CCNNNNNNNGG	1 cut(s)	516
BseMII	CTCAG	1 cut(s)	231
BseXI	GCAGC	5 cut(s)	238, 266, 271, 274, 433
BseYI	CCCAGC	1 cut(s)	509
BshNI	GGYRCC	1 cut(s)	109
BshVI	ATCGAT	1 cut(s)	496
BslI	CCNNNNNNNGG	1 cut(s)	516
BsmAI	GTCTC	2 cut(s)	269, 353
BsmI	GAATGC	1 cut(s)	476
Bsp143I	GATC	2 cut(s)	348, 497
BspACI	CCGC	3 cut(s)	5, 182, 257
BspCNI	CTCAG	1 cut(s)	232
BspDI	ATCGAT	1 cut(s)	496
BspLI	GGNNCC	2 cut(s)	111, 246
BspMAI	CTGCAG	1 cut(s)	256
BspT107I	GGYRCC	1 cut(s)	109
BssECI	CCNNGG	1 cut(s)	559
BssMI	GATC	2 cut(s)	348, 497
Bst2UI	CCWGG	1 cut(s)	561
Bst6I	CTCTTC	3 cut(s)	129, 192, 267
BstC8I	GCNNGC	1 cut(s)	153
BstDEI	CTNAG	3 cut(s)	156, 240, 450
BstF5I	GGATG	1 cut(s)	13
BstKTI	GATC	2 cut(s)	351, 500
BstMAI	GTCTC	2 cut(s)	269, 353
BstMBI	GATC	2 cut(s)	348, 497
BstMWI	GCNNNNNNNGC	4 cut(s)	17, 40, 242, 251
BstNI	CCWGG	1 cut(s)	561
BstSCI	CCNGG	1 cut(s)	559
BstSFI	CTRYAG	2 cut(s)	189, 252
BstV1I	GCAGC	5 cut(s)	238, 266, 271, 274, 433
BstV2I	GAAGAC	1 cut(s)	267
Bsu15I	ATCGAT	1 cut(s)	496
BsuTUI	ATCGAT	1 cut(s)	496
BtgZI	GCGATG	1 cut(s)	15
BtsCI	GGATG	1 cut(s)	13
Cac8I	GCNNGC	1 cut(s)	153
CaiI	CAGNNNCTG	1 cut(s)	368
Cfr13I	GGNCC	1 cut(s)	563
ClaI	ATCGAT	1 cut(s)	496
CspCI	CAANNNNNGTGG	2 cut(s)	213, 248
CviJI	RGCY	8 cut(s)	88, 131, 155, 236, 245, 355, 365, 446
CviKI_1	RGCY	8 cut(s)	88, 131, 155, 236, 245, 355, 365, 446
DdeI	CTNAG	3 cut(s)	156, 240, 450
DpnI	GATC	2 cut(s)	350, 499
DpnII	GATC	2 cut(s)	348, 497
Eam1104I	CTCTTC	3 cut(s)	129, 192, 267
EarI	CTCTTC	3 cut(s)	129, 192, 267
EciI	GGCGGA	1 cut(s)	20
Eco47I	GGWCC	1 cut(s)	563
Eco57I	CTGAAG	4 cut(s)	153, 291, 312, 351
EcoRII	CCWGG	1 cut(s)	559
Fnu4HI	GCNGC	5 cut(s)	252, 255, 285, 288, 447
FokI	GGATG	1 cut(s)	20
Fsp4HI	GCNGC	5 cut(s)	252, 255, 285, 288, 447
FspBI	CTAG	1 cut(s)	315
GluI	GCNGC	5 cut(s)	252, 255, 285, 288, 447
GsaI	CCCAGC	1 cut(s)	513
GsuI	CTGGAG	1 cut(s)	450
HindIII	AAGCTT	1 cut(s)	353
HinfI	GANTC	4 cut(s)	164, 209, 221, 277
HphI	GGTGA	1 cut(s)	467
Hpy166II	GTNNAC	1 cut(s)	16
Hpy188I	TCNGA	3 cut(s)	40, 208, 241
Hpy188III	TCNNGA	2 cut(s)	218, 467
Hpy8I	GTNNAC	1 cut(s)	16
HpyCH4IV	ACGT	1 cut(s)	423
HpyCH4V	TGCA	3 cut(s)	83, 254, 485
HpyF10VI	GCNNNNNNNGC	4 cut(s)	17, 40, 242, 251
HpyF3I	CTNAG	3 cut(s)	156, 240, 450
HpySE526I	ACGT	1 cut(s)	423
Kzo9I	GATC	2 cut(s)	348, 497
LmnI	GCTCC	5 cut(s)	148, 220, 250, 370, 469
Lsp1109I	GCAGC	5 cut(s)	238, 266, 271, 274, 433
LweI	GCATC	1 cut(s)	451
MaeI	CTAG	1 cut(s)	315
MaeII	ACGT	1 cut(s)	423
MaeIII	GTNAC	1 cut(s)	118
MalI	GATC	2 cut(s)	350, 499
MboI	GATC	2 cut(s)	348, 497
MboII	GAAGA	8 cut(s)	146, 173, 209, 272, 284, 305, 332, 344
MlyI	GAGTC	1 cut(s)	271
MnlI	CCTC	5 cut(s)	97, 130, 169, 235, 576
MseI	TTAA	1 cut(s)	141
MslI	CAYNNNNRTG	1 cut(s)	438
MspA1I	CMGCKG	1 cut(s)	257
MspR9I	CCNGG	1 cut(s)	561
Mva1269I	GAATGC	1 cut(s)	476
MvaI	CCWGG	1 cut(s)	561
MwoI	GCNNNNNNNGC	4 cut(s)	17, 40, 242, 251
NdeII	GATC	2 cut(s)	348, 497
NlaIV	GGNNCC	2 cut(s)	111, 246
OliI	CACNNNNGTG	1 cut(s)	438
PctI	GAATGC	1 cut(s)	476
PfeI	GAWTC	3 cut(s)	164, 209, 221
PflMI	CCANNNNNTGG	1 cut(s)	516
PkrI	GCNGC	5 cut(s)	253, 256, 286, 289, 448
PleI	GAGTC	1 cut(s)	271
PpsI	GAGTC	1 cut(s)	271
Psp6I	CCWGG	1 cut(s)	559
PspFI	CCCAGC	1 cut(s)	509
PspGI	CCWGG	1 cut(s)	559
PspN4I	GGNNCC	2 cut(s)	111, 246
PspPI	GGNCC	1 cut(s)	563
PstI	CTGCAG	1 cut(s)	256
PstNI	CAGNNNCTG	1 cut(s)	368
RseI	CAYNNNNRTG	1 cut(s)	438
SaqAI	TTAA	1 cut(s)	141
SatI	GCNGC	5 cut(s)	252, 255, 285, 288, 447
Sau3AI	GATC	2 cut(s)	348, 497
Sau96I	GGNCC	1 cut(s)	563
SchI	GAGTC	1 cut(s)	271
ScrFI	CCNGG	1 cut(s)	561
SetI	ASST	9 cut(s)	108, 133, 141, 157, 357, 367, 426, 448, 530
SfaNI	GCATC	1 cut(s)	451
SfcI	CTRYAG	2 cut(s)	189, 252
SinI	GGWCC	1 cut(s)	563
SmiMI	CAYNNNNRTG	1 cut(s)	438
SmlI	CTYRAG	1 cut(s)	356
SmoI	CTYRAG	1 cut(s)	356
SsiI	CCGC	3 cut(s)	5, 182, 257
SspMI	CTAG	1 cut(s)	315
StyD4I	CCNGG	1 cut(s)	559
TaiI	ACGT	1 cut(s)	426
TaqI	TCGA	1 cut(s)	496
TfiI	GAWTC	3 cut(s)	164, 209, 221
Tru1I	TTAA	1 cut(s)	141
Tru9I	TTAA	1 cut(s)	141
TseI	GCWGC	5 cut(s)	251, 254, 284, 287, 446
TspGWI	ACGGA	3 cut(s)	161, 242, 368
Van91I	CCANNNNNTGG	1 cut(s)	516
VpaK11BI	GGWCC	1 cut(s)	563
XspI	CTAG	1 cut(s)	315

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.