Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004101

Physical Location & Seq

Genomic Coordinates Forward (+)

23426647 .. 23427911

Gene Structure 1265 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G57815.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 237 bp

ATGGAAGACGAGATTGAATTGAAAACTGCTCCTGCTGATTTCCGGTTTCCTACAACAAATCAAACTAGGCACTGCTTCACTCGGTACATCGAGTTTCACAGGTGTACAACTGCAAAGGGAGAGGAGTCTAATGACTGTGAAAGGTTTGCCAAGTATTACCGTGCCCTCTGTCCTGGAGAATGGGTTGACAAGTGGAACGAGCAGAGGGAGAGTGGAACTTTTCCAGGTCCTCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006950 GO:0006970 GO:0008150 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009628 GO:0009651 GO:0016020 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0050896 GO:0055035

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04260 ko04714 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04260 map04714 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

COX6B

Protein Analysis

78

Amino Acids

9.25

Weight (kDa)

5.33

Isoelectric Point (pI)

42.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
COX6B	PF02297	15 - 75	9.5e-22	Cytochrome oxidase c subunit VIb

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0004101)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22450 AT4G28060 AT5G57815
fragaria_vesca	FvH4_4g10230 FvH4_4g10230 FvH4_5g36690
malus_domestica	MD08G1187700.v1.1 MD13G1274100.v1.1 MD15G1373600.v1.1 MD16G1261200.v1.1
prunus_persica	Prupe.1G098600_v2.0.a1 Prupe.1G098600_v2.0.a1 Prupe.1G098600_v2.0.a1 Prupe.1G522200_v2.0.a1
pyrus_communis	pycom08g16110 pycom15g33470 pycom16g22890
rosa_chinensis	RchiOBHm_Chr4g0405051 RchiOBHm_Chr7g0242671
rosa_laevigata	RLG00000000889
rosa_multiflora	Rmu_sc0000429.1_g000099 Rmu_sc0001744.1_g000012 Rmu_sc0017298.1_g000003
rosa_roxburghii	Rroxscaffold_3G00222600
rosa_rugosa	Rorug04G0052600 Rorug07G0316100
rosa_samantha	Rh4AG127700 Rh7AG471100 Rh7BG441400 Rh7CG488100
rosa_wichuraiana	Rw0G005460 Rw4G010340 Rw7G039250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	2 cut(s)	86, 106
AgsI	TTSAA	2 cut(s)	17, 22
AjnI	CCWGG	2 cut(s)	172, 223
AspS9I	GGNCC	1 cut(s)	227
AvaII	GGWCC	1 cut(s)	227
BaeGI	GKGCMC	1 cut(s)	166
BbsI	GAAGAC	1 cut(s)	12
BciT130I	CCWGG	2 cut(s)	174, 225
BfaI	CTAG	1 cut(s)	66
Bme1390I	CCNGG	2 cut(s)	174, 225
Bme18I	GGWCC	1 cut(s)	227
BmgT120I	GGNCC	1 cut(s)	227
BmrFI	CCNGG	2 cut(s)	174, 225
BpiI	GAAGAC	1 cut(s)	12
BpmI	CTGGAG	1 cut(s)	195
BsaWI	WCCGGW	1 cut(s)	42
BsaXI	ACNNNNNCTCC	2 cut(s)	168, 198
BseBI	CCWGG	2 cut(s)	174, 225
BseRI	GAGGAG	1 cut(s)	137
BseSI	GKGCMC	1 cut(s)	166
BsiSI	CCGG	1 cut(s)	43
Bsp1286I	GDGCHC	1 cut(s)	166
Bsp1407I	TGTACA	1 cut(s)	104
BsrGI	TGTACA	1 cut(s)	104
Bst2UI	CCWGG	2 cut(s)	174, 225
Bst4CI	ACNGT	2 cut(s)	137, 161
BstAUI	TGTACA	1 cut(s)	104
BstNI	CCWGG	2 cut(s)	174, 225
BstSCI	CCNGG	2 cut(s)	172, 223
BstSLI	GKGCMC	1 cut(s)	166
BstV2I	GAAGAC	1 cut(s)	12
BtsI	GCAGTG	1 cut(s)	70
BtsIMutI	CAGTG	1 cut(s)	70
Cfr13I	GGNCC	1 cut(s)	227
Csp6I	GTAC	2 cut(s)	85, 105
CviQI	GTAC	2 cut(s)	85, 105
Eco47I	GGWCC	1 cut(s)	227
EcoO109I	RGGNCCY	1 cut(s)	227
EcoRII	CCWGG	2 cut(s)	172, 223
FspBI	CTAG	1 cut(s)	66
GsuI	CTGGAG	1 cut(s)	195
HapII	CCGG	1 cut(s)	43
HincII	GTYRAC	1 cut(s)	187
HindII	GTYRAC	1 cut(s)	187
HinfI	GANTC	1 cut(s)	125
HpaII	CCGG	1 cut(s)	43
Hpy166II	GTNNAC	2 cut(s)	105, 187
Hpy8I	GTNNAC	2 cut(s)	105, 187
HpyCH4III	ACNGT	2 cut(s)	137, 161
HpyCH4V	TGCA	1 cut(s)	113
LmnI	GCTCC	1 cut(s)	34
LpnPI	CCDG	6 cut(s)	45, 56, 85, 159, 186, 210
MaeI	CTAG	1 cut(s)	66
MboII	GAAGA	1 cut(s)	17
MhlI	GDGCHC	1 cut(s)	166
MluCI	AATT	1 cut(s)	17
MlyI	GAGTC	1 cut(s)	134
MnlI	CCTC	3 cut(s)	115, 176, 198
MspI	CCGG	1 cut(s)	43
MspR9I	CCNGG	2 cut(s)	174, 225
MvaI	CCWGG	2 cut(s)	174, 225
PfoI	TCCNGGA	1 cut(s)	172
PleI	GAGTC	1 cut(s)	133
PpsI	GAGTC	1 cut(s)	133
PpuMI	RGGWCCY	1 cut(s)	227
Psp5II	RGGWCCY	1 cut(s)	227
Psp6I	CCWGG	2 cut(s)	172, 223
PspGI	CCWGG	2 cut(s)	172, 223
PspPI	GGNCC	1 cut(s)	227
PspPPI	RGGWCCY	1 cut(s)	227
RsaI	GTAC	2 cut(s)	86, 106
RsaNI	GTAC	2 cut(s)	85, 105
Sau96I	GGNCC	1 cut(s)	227
SchI	GAGTC	1 cut(s)	134
ScrFI	CCNGG	2 cut(s)	174, 225
SduI	GDGCHC	1 cut(s)	166
SetI	ASST	3 cut(s)	104, 146, 229
SinI	GGWCC	1 cut(s)	227
Sse9I	AATT	1 cut(s)	17
SspMI	CTAG	1 cut(s)	66
StyD4I	CCNGG	2 cut(s)	172, 223
TaaI	ACNGT	2 cut(s)	137, 161
TaqI	TCGA	1 cut(s)	90
TasI	AATT	1 cut(s)	17
TatI	WGTACW	1 cut(s)	104
TscAI	CASTG	1 cut(s)	77
TspRI	CASTG	1 cut(s)	77
VpaK11BI	GGWCC	1 cut(s)	227
XspI	CTAG	1 cut(s)	66

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.