Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0004101

Physical Location & Seq

Genomic Coordinates Forward (+)

42794124 .. 42797567

Gene Structure 3444 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G522200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGGCGGAGGCGCAAGGCGACAAAACCCAAACCCTAGCTGAGCAATACTCATTGGAGAAACCAGATGAGGCTACCAAACCTGTTGAAGTAAAAGTGGTTGAGAATCCAGCAACTGAAGTTGTCCCTGAGAAAGCTGAGGAAACACCTGCTGCTGCAGAAGAAAGCTCAGAAGTTACACCAGCTGGCGAAGAAAGCAATGAAGCCAGTCCTGCTGCTGCTGGCATAGAAGCTACTGAAACCAATCCTGCCACTGAAGCTGCTGCTGAAGAAAGCAGGGATAGTACTGAAAACTCAGGTGATCAAGAAGCAGCTGAAGAGACACCTGCAATTAAGATTGAGACGGCACCAGCAGATTTCCGTTTCCCAACAACAAATCAGACAAGGCATTGCTTTACCCGATACGTAGAGTATCATCGGTGTGTAGCTGCTAAGGGGGAAGATGCTCCAGAGTGTGACAAATTTGCAAAGTTTTACCGTTCTCTTTGCCCTGGTGAATGGATTGAGAGATGGAATGAGCAGAGGGAGAACGGAACCTTTCCAGGTCCTCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006950 GO:0006970 GO:0008150 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009628 GO:0009651 GO:0016020 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0050896 GO:0055035

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04260 ko04714 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04260 map04714 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

COX6B

Protein Analysis

184

Amino Acids

19.98

Weight (kDa)

4.34

Isoelectric Point (pI)

61.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004101)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22450 AT4G28060 AT5G57815
fragaria_vesca	FvH4_4g10230 FvH4_4g10230 FvH4_5g36690
malus_domestica	MD08G1187700.v1.1 MD13G1274100.v1.1 MD15G1373600.v1.1 MD16G1261200.v1.1
prunus_persica	Prupe.1G098600_v2.0.a1 Prupe.1G098600_v2.0.a1 Prupe.1G098600_v2.0.a1 Prupe.1G522200_v2.0.a1
pyrus_communis	pycom08g16110 pycom15g33470 pycom16g22890
rosa_chinensis	RchiOBHm_Chr4g0405051 RchiOBHm_Chr7g0242671
rosa_laevigata	RLG00000000889
rosa_multiflora	Rmu_sc0000429.1_g000099 Rmu_sc0001744.1_g000012 Rmu_sc0017298.1_g000003
rosa_roxburghii	Rroxscaffold_3G00222600
rosa_rugosa	Rorug04G0052600 Rorug07G0316100
rosa_samantha	Rh4AG127700 Rh7AG471100 Rh7BG441400 Rh7CG488100
rosa_wichuraiana	Rw0G005460 Rw4G010340 Rw7G039250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	154, 331
Acc36I	ACCTGC	2 cut(s)	154, 331
AccB1I	GGYRCC	1 cut(s)	343
AciI	CCGC	1 cut(s)	5
AcsI	RAATTY	1 cut(s)	458
AcuI	CTGAAG	4 cut(s)	135, 273, 285, 333
AfaI	GTAC	1 cut(s)	283
AgsI	TTSAA	1 cut(s)	86
AjnI	CCWGG	2 cut(s)	487, 538
AluBI	AGCT	8 cut(s)	38, 134, 165, 182, 230, 257, 311, 425
AluI	AGCT	8 cut(s)	38, 134, 165, 182, 230, 257, 311, 425
Alw26I	GTCTC	2 cut(s)	311, 332
AlwNI	CAGNNNCTG	1 cut(s)	113
ApeKI	GCWGC	8 cut(s)	149, 152, 212, 215, 257, 260, 308, 425
ApoI	RAATTY	1 cut(s)	458
AspLEI	GCGC	1 cut(s)	13
AspS9I	GGNCC	1 cut(s)	542
AsuHPI	GGTGA	2 cut(s)	308, 503
AvaII	GGWCC	1 cut(s)	542
BanI	GGYRCC	1 cut(s)	343
BbvCI	CCTCAGC	1 cut(s)	135
BbvI	GCAGC	8 cut(s)	136, 139, 199, 202, 244, 247, 320, 412
BccI	CCATC	1 cut(s)	501
BceAI	ACGGC	1 cut(s)	357
BciT130I	CCWGG	2 cut(s)	489, 540
BclI	TGATCA	1 cut(s)	298
BcoDI	GTCTC	2 cut(s)	311, 332
BfaI	CTAG	1 cut(s)	35
BfmI	CTRYAG	2 cut(s)	153, 548
BfuAI	ACCTGC	2 cut(s)	154, 331
BisI	GCNGC	8 cut(s)	150, 153, 213, 216, 258, 261, 309, 426
BlpI	GCTNAGC	1 cut(s)	39
BlsI	GCNGC	8 cut(s)	151, 154, 214, 217, 259, 262, 310, 427
BmcAI	AGTACT	1 cut(s)	283
Bme1390I	CCNGG	2 cut(s)	489, 540
Bme18I	GGWCC	1 cut(s)	542
BmgT120I	GGNCC	1 cut(s)	542
BmiI	GGNNCC	2 cut(s)	345, 532
BmrFI	CCNGG	2 cut(s)	489, 540
BmsI	GCATC	1 cut(s)	430
BplI	GAGNNNNNCTC	2 cut(s)	32, 64
BpmI	CTGGAG	1 cut(s)	429
Bpu10I	CCTNAGC	2 cut(s)	135, 429
Bpu1102I	GCTNAGC	1 cut(s)	39
BsaAI	YACGTR	1 cut(s)	403
BsaJI	CCNNGG	1 cut(s)	487
Bse1I	ACTGG	1 cut(s)	204
Bse3DI	GCAATG	2 cut(s)	202, 385
BseBI	CCWGG	2 cut(s)	489, 540
BseDI	CCNNGG	1 cut(s)	487
BseMI	GCAATG	2 cut(s)	202, 385
BseMII	CTCAG	5 cut(s)	30, 117, 126, 180, 306
BseNI	ACTGG	1 cut(s)	204
BseXI	GCAGC	8 cut(s)	136, 139, 199, 202, 244, 247, 320, 412
BshNI	GGYRCC	1 cut(s)	343
BslFI	GGGAC	1 cut(s)	107
BsmAI	GTCTC	2 cut(s)	311, 332
BsmBI	CGTCTC	1 cut(s)	332
BsmFI	GGGAC	1 cut(s)	107
Bsp143I	GATC	1 cut(s)	298
Bsp1720I	GCTNAGC	1 cut(s)	39
BspACI	CCGC	1 cut(s)	5
BspCNI	CTCAG	5 cut(s)	31, 118, 127, 179, 305
BspLI	GGNNCC	2 cut(s)	345, 532
BspMAI	CTGCAG	1 cut(s)	157
BspMI	ACCTGC	2 cut(s)	154, 331
BspT107I	GGYRCC	1 cut(s)	343
BsrDI	GCAATG	2 cut(s)	202, 385
BsrI	ACTGG	1 cut(s)	204
BssECI	CCNNGG	1 cut(s)	487
BssMI	GATC	1 cut(s)	298
Bst2UI	CCWGG	2 cut(s)	489, 540
Bst4CI	ACNGT	1 cut(s)	476
Bst6I	CTCTTC	1 cut(s)	309
BstBAI	YACGTR	1 cut(s)	403
BstC8I	GCNNGC	2 cut(s)	184, 220
BstDEI	CTNAG	6 cut(s)	39, 126, 135, 166, 292, 429
BstHHI	GCGC	1 cut(s)	13
BstKTI	GATC	1 cut(s)	301
BstMAI	GTCTC	2 cut(s)	311, 332
BstMBI	GATC	1 cut(s)	298
BstMWI	GCNNNNNNNGC	3 cut(s)	192, 209, 254
BstNI	CCWGG	2 cut(s)	489, 540
BstSCI	CCNGG	2 cut(s)	487, 538
BstSFI	CTRYAG	2 cut(s)	153, 548
BstSNI	TACGTA	1 cut(s)	403
BstV1I	GCAGC	8 cut(s)	136, 139, 199, 202, 244, 247, 320, 412
BtsIMutI	CAGTG	1 cut(s)	249
BveI	ACCTGC	2 cut(s)	154, 331
Cac8I	GCNNGC	2 cut(s)	184, 220
CaiI	CAGNNNCTG	1 cut(s)	113
CfoI	GCGC	1 cut(s)	13
Cfr13I	GGNCC	1 cut(s)	542
Csp6I	GTAC	1 cut(s)	282
CviQI	GTAC	1 cut(s)	282
DdeI	CTNAG	6 cut(s)	39, 126, 135, 166, 292, 429
DpnI	GATC	1 cut(s)	300
DpnII	GATC	1 cut(s)	298
Eam1104I	CTCTTC	1 cut(s)	309
EarI	CTCTTC	1 cut(s)	309
EciI	GGCGGA	1 cut(s)	20
Eco105I	TACGTA	1 cut(s)	403
Eco47I	GGWCC	1 cut(s)	542
Eco57I	CTGAAG	4 cut(s)	135, 273, 285, 333
EcoO109I	RGGNCCY	1 cut(s)	542
EcoRII	CCWGG	2 cut(s)	487, 538
Esp3I	CGTCTC	1 cut(s)	332
FaiI	YATR	1 cut(s)	224
FaqI	GGGAC	1 cut(s)	107
FbaI	TGATCA	1 cut(s)	298
Fnu4HI	GCNGC	8 cut(s)	150, 153, 213, 216, 258, 261, 309, 426
Fsp4HI	GCNGC	8 cut(s)	150, 153, 213, 216, 258, 261, 309, 426
FspBI	CTAG	1 cut(s)	35
GlaI	GCGC	1 cut(s)	12
GluI	GCNGC	8 cut(s)	150, 153, 213, 216, 258, 261, 309, 426
GsuI	CTGGAG	1 cut(s)	429
HhaI	GCGC	1 cut(s)	13
Hin6I	GCGC	1 cut(s)	11
HinP1I	GCGC	1 cut(s)	11
HinfI	GANTC	1 cut(s)	103
HphI	GGTGA	2 cut(s)	308, 503
Hpy188I	TCNGA	2 cut(s)	169, 378
Hpy188III	TCNNGA	2 cut(s)	302, 446
HpyCH4III	ACNGT	1 cut(s)	476
HpyCH4IV	ACGT	1 cut(s)	402
HpyCH4V	TGCA	3 cut(s)	155, 326, 464
HpyF10VI	GCNNNNNNNGC	3 cut(s)	192, 209, 254
HpyF3I	CTNAG	6 cut(s)	39, 126, 135, 166, 292, 429
HpySE526I	ACGT	1 cut(s)	402
HspAI	GCGC	1 cut(s)	11
Ksp22I	TGATCA	1 cut(s)	298
Kzo9I	GATC	1 cut(s)	298
LmnI	GCTCC	1 cut(s)	448
Lsp1109I	GCAGC	8 cut(s)	136, 139, 199, 202, 244, 247, 320, 412
LweI	GCATC	1 cut(s)	430
MaeI	CTAG	1 cut(s)	35
MaeII	ACGT	1 cut(s)	402
MaeIII	GTNAC	2 cut(s)	172, 452
MalI	GATC	1 cut(s)	300
MboI	GATC	1 cut(s)	298
MboII	GAAGA	5 cut(s)	170, 200, 278, 326, 449
MluCI	AATT	2 cut(s)	327, 458
MnlI	CCTC	3 cut(s)	61, 130, 513
MseI	TTAA	1 cut(s)	330
MslI	CAYNNNNRTG	1 cut(s)	417
MspA1I	CMGCKG	2 cut(s)	182, 311
MspR9I	CCNGG	2 cut(s)	489, 540
MvaI	CCWGG	2 cut(s)	489, 540
MwoI	GCNNNNNNNGC	3 cut(s)	192, 209, 254
NdeII	GATC	1 cut(s)	298
NlaIV	GGNNCC	2 cut(s)	345, 532
NmuCI	GTSAC	1 cut(s)	452
PaqCI	CACCTGC	2 cut(s)	154, 331
PfeI	GAWTC	1 cut(s)	103
PkrI	GCNGC	8 cut(s)	151, 154, 214, 217, 259, 262, 310, 427
Ppu21I	YACGTR	1 cut(s)	403
PpuMI	RGGWCCY	1 cut(s)	542
Psp5II	RGGWCCY	1 cut(s)	542
Psp6I	CCWGG	2 cut(s)	487, 538
PspGI	CCWGG	2 cut(s)	487, 538
PspN4I	GGNNCC	2 cut(s)	345, 532
PspPI	GGNCC	1 cut(s)	542
PspPPI	RGGWCCY	1 cut(s)	542
PstI	CTGCAG	1 cut(s)	157
PstNI	CAGNNNCTG	1 cut(s)	113
PvuII	CAGCTG	2 cut(s)	182, 311
RsaI	GTAC	1 cut(s)	283
RsaNI	GTAC	1 cut(s)	282
RseI	CAYNNNNRTG	1 cut(s)	417
SaqAI	TTAA	1 cut(s)	330
SatI	GCNGC	8 cut(s)	150, 153, 213, 216, 258, 261, 309, 426
Sau3AI	GATC	1 cut(s)	298
Sau96I	GGNCC	1 cut(s)	542
ScaI	AGTACT	1 cut(s)	283
ScrFI	CCNGG	2 cut(s)	489, 540
SfaNI	GCATC	1 cut(s)	430
SfcI	CTRYAG	2 cut(s)	153, 548
SinI	GGWCC	1 cut(s)	542
SmiMI	CAYNNNNRTG	1 cut(s)	417
SnaBI	TACGTA	1 cut(s)	403
Sse9I	AATT	2 cut(s)	327, 458
SsiI	CCGC	1 cut(s)	5
SspMI	CTAG	1 cut(s)	35
StyD4I	CCNGG	2 cut(s)	487, 538
TaaI	ACNGT	1 cut(s)	476
TaiI	ACGT	1 cut(s)	405
TasI	AATT	2 cut(s)	327, 458
TatI	WGTACW	1 cut(s)	281
TfiI	GAWTC	1 cut(s)	103
Tru1I	TTAA	1 cut(s)	330
Tru9I	TTAA	1 cut(s)	330
TscAI	CASTG	1 cut(s)	256
TseFI	GTSAC	1 cut(s)	452
TseI	GCWGC	8 cut(s)	149, 152, 212, 215, 257, 260, 308, 425
Tsp45I	GTSAC	1 cut(s)	452
TspDTI	ATGAA	1 cut(s)	213
TspGWI	ACGGA	2 cut(s)	347, 543
TspRI	CASTG	1 cut(s)	256
VpaK11BI	GGWCC	1 cut(s)	542
XapI	RAATTY	1 cut(s)	458
XspI	CTAG	1 cut(s)	35
ZrmI	AGTACT	1 cut(s)	283

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.