Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0004101

Physical Location & Seq

Genomic Coordinates Reverse (-)

27606252 .. 27608096

Gene Structure 1845 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG127700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 237 bp

ATGGCCGAGGTTGAGCTGAAAACAGCACCTGCTGATTTTCGATTCCCTACAACAAATCAAACCAGGCACTGTTTCACGCGATACATTGAGTTTCATAGGTGCTTAGCAGCAAAGGGTGAAGAGTCTGGTGAATGTGAAAGATTTTCCAAATATTACCGTTCGCTTTGCCCAGGCGAATGGGTTGAGAAGTGGAACGAGCAGAGGGAGACTGGGACATTCCCAGTTGGATCATTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006950 GO:0006970 GO:0008150 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009628 GO:0009651 GO:0016020 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0050896 GO:0055035

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04260 ko04714 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04260 map04714 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

COX6B

Protein Analysis

78

Amino Acids

9.16

Weight (kDa)

6.1

Isoelectric Point (pI)

42.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
COX6B	PF02297	14 - 74	7.5e-23	Cytochrome oxidase c subunit VIb

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0004101)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22450 AT4G28060 AT5G57815
fragaria_vesca	FvH4_4g10230 FvH4_4g10230 FvH4_5g36690
malus_domestica	MD08G1187700.v1.1 MD13G1274100.v1.1 MD15G1373600.v1.1 MD16G1261200.v1.1
prunus_persica	Prupe.1G098600_v2.0.a1 Prupe.1G098600_v2.0.a1 Prupe.1G098600_v2.0.a1 Prupe.1G522200_v2.0.a1
pyrus_communis	pycom08g16110 pycom15g33470 pycom16g22890
rosa_chinensis	RchiOBHm_Chr4g0405051 RchiOBHm_Chr7g0242671
rosa_laevigata	RLG00000000889
rosa_multiflora	Rmu_sc0000429.1_g000099 Rmu_sc0001744.1_g000012 Rmu_sc0017298.1_g000003
rosa_roxburghii	Rroxscaffold_3G00222600
rosa_rugosa	Rorug04G0052600 Rorug07G0316100
rosa_samantha	Rh4AG127700 Rh7AG471100 Rh7BG441400 Rh7CG488100
rosa_wichuraiana	Rw0G005460 Rw4G010340 Rw7G039250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	37
Acc36I	ACCTGC	1 cut(s)	37
AccII	CGCG	1 cut(s)	79
AclWI	GGATC	1 cut(s)	235
AcoI	YGGCCR	1 cut(s)	3
AjnI	CCWGG	2 cut(s)	62, 169
AluBI	AGCT	1 cut(s)	16
AluI	AGCT	1 cut(s)	16
Alw26I	GTCTC	1 cut(s)	200
AlwI	GGATC	1 cut(s)	235
AlwNI	CAGNNNCTG	2 cut(s)	29, 69
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	1 cut(s)	107
AsuHPI	GGTGA	2 cut(s)	128, 140
BbvI	GCAGC	1 cut(s)	119
BciT130I	CCWGG	2 cut(s)	64, 171
BcoDI	GTCTC	1 cut(s)	200
BfuAI	ACCTGC	1 cut(s)	37
BisI	GCNGC	1 cut(s)	108
BlpI	GCTNAGC	1 cut(s)	103
BlsI	GCNGC	1 cut(s)	109
Bme1390I	CCNGG	2 cut(s)	64, 171
BmrFI	CCNGG	2 cut(s)	64, 171
BmrI	ACTGGG	2 cut(s)	215, 219
BmuI	ACTGGG	2 cut(s)	215, 219
Bpu1102I	GCTNAGC	1 cut(s)	103
BsaJI	CCNNGG	2 cut(s)	6, 169
Bse1I	ACTGG	2 cut(s)	214, 221
BseBI	CCWGG	2 cut(s)	64, 171
BseDI	CCNNGG	2 cut(s)	6, 169
BseNI	ACTGG	2 cut(s)	214, 221
BseXI	GCAGC	1 cut(s)	119
Bsh1236I	CGCG	1 cut(s)	79
BshFI	GGCC	1 cut(s)	5
BslFI	GGGAC	1 cut(s)	226
BsmAI	GTCTC	1 cut(s)	200
BsmFI	GGGAC	1 cut(s)	226
BsnI	GGCC	1 cut(s)	5
Bsp143I	GATC	1 cut(s)	227
Bsp1720I	GCTNAGC	1 cut(s)	103
BspANI	GGCC	1 cut(s)	5
BspFNI	CGCG	1 cut(s)	79
BspMI	ACCTGC	1 cut(s)	37
BspPI	GGATC	1 cut(s)	235
BsrI	ACTGG	2 cut(s)	214, 221
BssECI	CCNNGG	2 cut(s)	6, 169
BssMI	GATC	1 cut(s)	227
Bst2UI	CCWGG	2 cut(s)	64, 171
Bst4CI	ACNGT	2 cut(s)	71, 158
Bst6I	CTCTTC	1 cut(s)	114
BstDEI	CTNAG	1 cut(s)	103
BstFNI	CGCG	1 cut(s)	79
BstKTI	GATC	1 cut(s)	230
BstMAI	GTCTC	1 cut(s)	200
BstMBI	GATC	1 cut(s)	227
BstNI	CCWGG	2 cut(s)	64, 171
BstSCI	CCNGG	2 cut(s)	62, 169
BstUI	CGCG	1 cut(s)	79
BstV1I	GCAGC	1 cut(s)	119
BstXI	CCANNNNNNTGG	1 cut(s)	177
BsuRI	GGCC	1 cut(s)	5
BtsIMutI	CAGTG	1 cut(s)	67
BveI	ACCTGC	1 cut(s)	37
CaiI	CAGNNNCTG	2 cut(s)	29, 69
CviJI	RGCY	2 cut(s)	5, 16
CviKI_1	RGCY	2 cut(s)	5, 16
DdeI	CTNAG	1 cut(s)	103
DpnI	GATC	1 cut(s)	229
DpnII	GATC	1 cut(s)	227
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	114
EarI	CTCTTC	1 cut(s)	114
EcoRII	CCWGG	2 cut(s)	62, 169
FaiI	YATR	1 cut(s)	96
FaqI	GGGAC	1 cut(s)	226
Fnu4HI	GCNGC	1 cut(s)	108
Fsp4HI	GCNGC	1 cut(s)	108
GluI	GCNGC	1 cut(s)	108
HaeIII	GGCC	1 cut(s)	5
HinfI	GANTC	2 cut(s)	42, 122
HphI	GGTGA	2 cut(s)	128, 140
HpyCH4III	ACNGT	2 cut(s)	71, 158
HpyF3I	CTNAG	1 cut(s)	103
Kzo9I	GATC	1 cut(s)	227
LpnPI	CCDG	7 cut(s)	42, 49, 76, 111, 156, 183, 195
Lsp1109I	GCAGC	1 cut(s)	119
MalI	GATC	1 cut(s)	229
MboI	GATC	1 cut(s)	227
MboII	GAAGA	1 cut(s)	131
MlyI	GAGTC	1 cut(s)	131
MmeI	TCCRAC	1 cut(s)	205
MnlI	CCTC	1 cut(s)	195
MspR9I	CCNGG	2 cut(s)	64, 171
MvaI	CCWGG	2 cut(s)	64, 171
MvnI	CGCG	1 cut(s)	79
NdeII	GATC	1 cut(s)	227
NmeAIII	GCCGAG	1 cut(s)	31
PaqCI	CACCTGC	1 cut(s)	37
PfeI	GAWTC	1 cut(s)	42
PkrI	GCNGC	1 cut(s)	109
PleI	GAGTC	1 cut(s)	130
PpsI	GAGTC	1 cut(s)	130
Psp6I	CCWGG	2 cut(s)	62, 169
PspGI	CCWGG	2 cut(s)	62, 169
PstNI	CAGNNNCTG	2 cut(s)	29, 69
SatI	GCNGC	1 cut(s)	108
Sau3AI	GATC	1 cut(s)	227
SchI	GAGTC	1 cut(s)	131
ScrFI	CCNGG	2 cut(s)	64, 171
SetI	ASST	4 cut(s)	12, 18, 31, 101
SspI	AATATT	1 cut(s)	152
StyD4I	CCNGG	2 cut(s)	62, 169
TaaI	ACNGT	2 cut(s)	71, 158
TaqI	TCGA	1 cut(s)	40
TfiI	GAWTC	1 cut(s)	42
TscAI	CASTG	1 cut(s)	74
TseI	GCWGC	1 cut(s)	107
TspDTI	ATGAA	1 cut(s)	83
TspRI	CASTG	1 cut(s)	74

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.