Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0004101

Physical Location & Seq

Genomic Coordinates Forward (+)

7456923 .. 7460070

Gene Structure 3148 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000000889

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGGCGGAGCCGCAAGCCGACAAACCCCAAACCCTAGCTGAGCAATACTCATTGGAGAAACCAGATGTGGTAACCAAGCCTGTTGAAGTAAAAGTGGTTGAGACCCCGGACAATGTACCTTCCAAGGAAGTTGTCTCTGAGAAAGCTGAGGAAGCACCTGCAGCTCCAGAAGAAAGTCCAGTAGTTACACCAGCTAGTGAAGAAACCAGTGAAGTCAGTCCTGCTGTTGCTGAAACTGAAACCAAACCTGCCTCTGAAGACAGCACTGAAGCAGCTCCTGAAGAAAGCAGTGAAGCAGCTCCTGAAGAAAGCAGTGATAGTACTGAAACATCTGTTGACCAAGAAGCAGTTGAAGAGACACCTGAAATTAAGATTGAGACGGCACCGGCAGATTTCCGTTTCCCAACTACAAATCAGACTAGGCATTGCTTTACCCGATACGTAGAATATCATCGGTGCATAGCTGCAAAGGGGGAAGAAGCTCCAGAGTGTGATAAATTTAAAAAGTACTATCGTTCTCTTTGCCCCGGTGAATGGGTGGAGAGATGGAATGAGCAAAGGGAGAATGGAACCTTTCCCGGTCCTCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006950 GO:0006970 GO:0008150 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009628 GO:0009651 GO:0016020 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0050896 GO:0055035

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04260 ko04714 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04260 map04714 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

COX6B

Protein Analysis

197

Amino Acids

21.66

Weight (kDa)

4.33

Isoelectric Point (pI)

70.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
COX6B	PF02297	133 - 193	4e-22	Cytochrome oxidase c subunit VIb

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004101)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22450 AT4G28060 AT5G57815
fragaria_vesca	FvH4_4g10230 FvH4_4g10230 FvH4_5g36690
malus_domestica	MD08G1187700.v1.1 MD13G1274100.v1.1 MD15G1373600.v1.1 MD16G1261200.v1.1
prunus_persica	Prupe.1G098600_v2.0.a1 Prupe.1G098600_v2.0.a1 Prupe.1G098600_v2.0.a1 Prupe.1G522200_v2.0.a1
pyrus_communis	pycom08g16110 pycom15g33470 pycom16g22890
rosa_chinensis	RchiOBHm_Chr4g0405051 RchiOBHm_Chr7g0242671
rosa_laevigata	RLG00000000889
rosa_multiflora	Rmu_sc0000429.1_g000099 Rmu_sc0001744.1_g000012 Rmu_sc0017298.1_g000003
rosa_roxburghii	Rroxscaffold_3G00222600
rosa_rugosa	Rorug04G0052600 Rorug07G0316100
rosa_samantha	Rh4AG127700 Rh7AG471100 Rh7BG441400 Rh7CG488100
rosa_wichuraiana	Rw0G005460 Rw4G010340 Rw7G039250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	166
Acc36I	ACCTGC	2 cut(s)	166, 256
AccB1I	GGYRCC	1 cut(s)	382
AciI	CCGC	2 cut(s)	5, 11
AcsI	RAATTY	1 cut(s)	497
AcuI	CTGAAG	4 cut(s)	276, 288, 300, 324
AfaI	GTAC	3 cut(s)	117, 322, 509
AfiI	CCNNNNNNNGG	1 cut(s)	534
AgsI	TTSAA	2 cut(s)	86, 353
AluBI	AGCT	8 cut(s)	38, 146, 164, 194, 275, 299, 464, 482
AluI	AGCT	8 cut(s)	38, 146, 164, 194, 275, 299, 464, 482
Alw26I	GTCTC	4 cut(s)	95, 139, 350, 371
AlwNI	CAGNNNCTG	2 cut(s)	278, 302
ApeKI	GCWGC	4 cut(s)	161, 272, 296, 464
ApoI	RAATTY	1 cut(s)	497
AspS9I	GGNCC	1 cut(s)	581
AsuC2I	CCSGG	3 cut(s)	107, 528, 579
AsuHPI	GGTGA	1 cut(s)	542
AvaII	GGWCC	1 cut(s)	581
BanI	GGYRCC	1 cut(s)	382
BbsI	GAAGAC	1 cut(s)	264
BbvCI	CCTCAGC	1 cut(s)	147
BbvI	GCAGC	4 cut(s)	173, 284, 308, 451
BccI	CCATC	1 cut(s)	540
BceAI	ACGGC	1 cut(s)	396
BcnI	CCSGG	3 cut(s)	107, 528, 579
BcoDI	GTCTC	4 cut(s)	95, 139, 350, 371
BfaI	CTAG	3 cut(s)	35, 195, 420
BfmI	CTRYAG	2 cut(s)	159, 587
BfuAI	ACCTGC	2 cut(s)	166, 256
BisI	GCNGC	5 cut(s)	11, 162, 273, 297, 465
BlpI	GCTNAGC	1 cut(s)	39
BlsI	GCNGC	5 cut(s)	12, 163, 274, 298, 466
BmcAI	AGTACT	2 cut(s)	322, 509
Bme1390I	CCNGG	3 cut(s)	107, 528, 579
Bme18I	GGWCC	1 cut(s)	581
BmgT120I	GGNCC	1 cut(s)	581
BmiI	GGNNCC	3 cut(s)	9, 384, 571
BmrFI	CCNGG	3 cut(s)	107, 528, 579
BpiI	GAAGAC	1 cut(s)	264
BplI	GAGNNNNNCTC	2 cut(s)	32, 64
BpmI	CTGGAG	2 cut(s)	150, 468
Bpu10I	CCTNAGC	1 cut(s)	147
Bpu1102I	GCTNAGC	1 cut(s)	39
BpuMI	CCSGG	3 cut(s)	107, 528, 579
BsaAI	YACGTR	1 cut(s)	442
BsaI	GGTCTC	1 cut(s)	95
BsaJI	CCNNGG	3 cut(s)	105, 123, 526
Bsc4I	CCNNNNNNNGG	1 cut(s)	534
Bse118I	RCCGGY	1 cut(s)	385
Bse1I	ACTGG	2 cut(s)	179, 207
Bse3DI	GCAATG	1 cut(s)	424
BseDI	CCNNGG	3 cut(s)	105, 123, 526
BseLI	CCNNNNNNNGG	1 cut(s)	534
BseMI	GCAATG	1 cut(s)	424
BseMII	CTCAG	3 cut(s)	30, 129, 138
BseNI	ACTGG	2 cut(s)	179, 207
BseXI	GCAGC	4 cut(s)	173, 284, 308, 451
BshNI	GGYRCC	1 cut(s)	382
BsiSI	CCGG	4 cut(s)	107, 386, 528, 579
BslI	CCNNNNNNNGG	1 cut(s)	534
BsmAI	GTCTC	4 cut(s)	95, 139, 350, 371
BsmBI	CGTCTC	1 cut(s)	371
Bso31I	GGTCTC	1 cut(s)	95
Bsp1720I	GCTNAGC	1 cut(s)	39
BspACI	CCGC	2 cut(s)	5, 11
BspCNI	CTCAG	3 cut(s)	31, 130, 139
BspLI	GGNNCC	3 cut(s)	9, 384, 571
BspMAI	CTGCAG	1 cut(s)	163
BspMI	ACCTGC	2 cut(s)	166, 256
BspT107I	GGYRCC	1 cut(s)	382
BspTNI	GGTCTC	1 cut(s)	95
BsrDI	GCAATG	1 cut(s)	424
BsrFI	RCCGGY	1 cut(s)	385
BsrI	ACTGG	2 cut(s)	179, 207
BssAI	RCCGGY	1 cut(s)	385
BssECI	CCNNGG	3 cut(s)	105, 123, 526
BssT1I	CCWWGG	1 cut(s)	123
Bst6I	CTCTTC	1 cut(s)	348
BstBAI	YACGTR	1 cut(s)	442
BstC8I	GCNNGC	1 cut(s)	15
BstDEI	CTNAG	3 cut(s)	39, 138, 147
BstEII	GGTNACC	1 cut(s)	70
BstMAI	GTCTC	4 cut(s)	95, 139, 350, 371
BstMWI	GCNNNNNNNGC	2 cut(s)	152, 161
BstPI	GGTNACC	1 cut(s)	70
BstSCI	CCNGG	3 cut(s)	105, 526, 577
BstSFI	CTRYAG	2 cut(s)	159, 587
BstSNI	TACGTA	1 cut(s)	442
BstV1I	GCAGC	4 cut(s)	173, 284, 308, 451
BstV2I	GAAGAC	1 cut(s)	264
BtsI	GCAGTG	2 cut(s)	295, 319
BtsIMutI	CAGTG	4 cut(s)	214, 264, 295, 319
BveI	ACCTGC	2 cut(s)	166, 256
Cac8I	GCNNGC	1 cut(s)	15
CaiI	CAGNNNCTG	2 cut(s)	278, 302
Cfr10I	RCCGGY	1 cut(s)	385
Cfr13I	GGNCC	1 cut(s)	581
Csp6I	GTAC	3 cut(s)	116, 321, 508
CviQI	GTAC	3 cut(s)	116, 321, 508
DdeI	CTNAG	3 cut(s)	39, 138, 147
DraI	TTTAAA	1 cut(s)	502
Eam1104I	CTCTTC	1 cut(s)	348
EarI	CTCTTC	1 cut(s)	348
EciI	GGCGGA	1 cut(s)	20
Eco105I	TACGTA	1 cut(s)	442
Eco130I	CCWWGG	1 cut(s)	123
Eco31I	GGTCTC	1 cut(s)	95
Eco47I	GGWCC	1 cut(s)	581
Eco57I	CTGAAG	4 cut(s)	276, 288, 300, 324
Eco91I	GGTNACC	1 cut(s)	70
EcoO65I	GGTNACC	1 cut(s)	70
EcoT14I	CCWWGG	1 cut(s)	123
ErhI	CCWWGG	1 cut(s)	123
Esp3I	CGTCTC	1 cut(s)	371
FaiI	YATR	1 cut(s)	461
Fnu4HI	GCNGC	5 cut(s)	11, 162, 273, 297, 465
Fsp4HI	GCNGC	5 cut(s)	11, 162, 273, 297, 465
FspBI	CTAG	3 cut(s)	35, 195, 420
GluI	GCNGC	5 cut(s)	11, 162, 273, 297, 465
GsuI	CTGGAG	2 cut(s)	150, 468
HapII	CCGG	4 cut(s)	107, 386, 528, 579
HincII	GTYRAC	1 cut(s)	337
HindII	GTYRAC	1 cut(s)	337
HpaII	CCGG	4 cut(s)	107, 386, 528, 579
HphI	GGTGA	1 cut(s)	542
Hpy166II	GTNNAC	1 cut(s)	337
Hpy188I	TCNGA	3 cut(s)	139, 256, 417
Hpy188III	TCNNGA	4 cut(s)	167, 278, 302, 485
Hpy8I	GTNNAC	1 cut(s)	337
HpyAV	CCTTC	1 cut(s)	129
HpyCH4IV	ACGT	1 cut(s)	441
HpyCH4V	TGCA	3 cut(s)	161, 459, 467
HpyF10VI	GCNNNNNNNGC	2 cut(s)	152, 161
HpyF3I	CTNAG	3 cut(s)	39, 138, 147
HpySE526I	ACGT	1 cut(s)	441
LmnI	GCTCC	5 cut(s)	7, 169, 280, 304, 487
Lsp1109I	GCAGC	4 cut(s)	173, 284, 308, 451
MaeI	CTAG	3 cut(s)	35, 195, 420
MaeII	ACGT	1 cut(s)	441
MaeIII	GTNAC	2 cut(s)	70, 184
MboII	GAAGA	7 cut(s)	182, 212, 269, 293, 317, 365, 488
MluCI	AATT	2 cut(s)	366, 497
MnlI	CCTC	2 cut(s)	142, 262
MseI	TTAA	2 cut(s)	369, 501
MspI	CCGG	4 cut(s)	107, 386, 528, 579
MspR9I	CCNGG	3 cut(s)	107, 528, 579
MwoI	GCNNNNNNNGC	2 cut(s)	152, 161
NciI	CCSGG	3 cut(s)	107, 528, 579
NlaIV	GGNNCC	3 cut(s)	9, 384, 571
PaqCI	CACCTGC	1 cut(s)	166
PkrI	GCNGC	5 cut(s)	12, 163, 274, 298, 466
Ppu21I	YACGTR	1 cut(s)	442
PspEI	GGTNACC	1 cut(s)	70
PspN4I	GGNNCC	3 cut(s)	9, 384, 571
PspPI	GGNCC	1 cut(s)	581
PstI	CTGCAG	1 cut(s)	163
PstNI	CAGNNNCTG	2 cut(s)	278, 302
RsaI	GTAC	3 cut(s)	117, 322, 509
RsaNI	GTAC	3 cut(s)	116, 321, 508
SaqAI	TTAA	2 cut(s)	369, 501
SatI	GCNGC	5 cut(s)	11, 162, 273, 297, 465
Sau96I	GGNCC	1 cut(s)	581
ScaI	AGTACT	2 cut(s)	322, 509
ScrFI	CCNGG	3 cut(s)	107, 528, 579
SfcI	CTRYAG	2 cut(s)	159, 587
SinI	GGWCC	1 cut(s)	581
SnaBI	TACGTA	1 cut(s)	442
Sse9I	AATT	2 cut(s)	366, 497
SsiI	CCGC	2 cut(s)	5, 11
SspMI	CTAG	3 cut(s)	35, 195, 420
StyD4I	CCNGG	3 cut(s)	105, 526, 577
StyI	CCWWGG	1 cut(s)	123
TaiI	ACGT	1 cut(s)	444
TasI	AATT	2 cut(s)	366, 497
TatI	WGTACW	2 cut(s)	320, 507
TauI	GCSGC	1 cut(s)	13
Tru1I	TTAA	2 cut(s)	369, 501
Tru9I	TTAA	2 cut(s)	369, 501
TscAI	CASTG	4 cut(s)	214, 271, 295, 319
TseI	GCWGC	4 cut(s)	161, 272, 296, 464
TspGWI	ACGGA	1 cut(s)	386
TspRI	CASTG	4 cut(s)	214, 271, 295, 319
VpaK11BI	GGWCC	1 cut(s)	581
XapI	RAATTY	1 cut(s)	497
XspI	CTAG	3 cut(s)	35, 195, 420
ZrmI	AGTACT	2 cut(s)	322, 509

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.