Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0004101

Physical Location & Seq

Genomic Coordinates Forward (+)

23608165 .. 23612013

Gene Structure 3849 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1187700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGGCGGAGACGCAAGCCGACAAAATCCAAACCCTAGCTGAGCAATACGCATTGGAGAAAGATGTGGGTGCCAAGCCTGTCGAAGTAAAAGAAGTTGTTTCTGAGAAACCTGAGGAAGCACCTGCTGCTTCTGCTGCTGCAGCAGAAGAAAGCTCTGAAGTTACACCAGCTGTTGAAGTAAGCAGTGAAGCTAGTCCTACTGCTGCTACTGAAGAAGGCACTGAAACCAATCCTACCTCTGAAGCTGCTGCTGAAGAAAGCAGTGATAGTACTGAAAACTCAGGTGACCAAGAAATAGTTGAAGAGACACCTGAAATTAAGATTGAGACGGCACCAGCAGATTTCCGTTTCCCAACTACTAACCAGACAAGGCATTGCTTTACCCGATATATAGAGTATCATCGGTGCATAGCTGCAAAGGGGGAAGATGCTCCGGAGTGTGACAAATTTGCAAAGTTTTACCGCTCTCTTTGCCCTGGTGAATGGGTTGAGAGATGGAACGAGCAAAGGGAGAACGGAACTTTTCCAGGTCCCCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006950 GO:0006970 GO:0008150 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009628 GO:0009651 GO:0016020 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0050896 GO:0055035

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04260 ko04714 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04260 map04714 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

COX6B

Protein Analysis

180

Amino Acids

19.58

Weight (kDa)

4.32

Isoelectric Point (pI)

61.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
COX6B	PF02297	116 - 176	3.4e-22	Cytochrome oxidase c subunit VIb

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004101)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22450 AT4G28060 AT5G57815
fragaria_vesca	FvH4_4g10230 FvH4_4g10230 FvH4_5g36690
malus_domestica	MD08G1187700.v1.1 MD13G1274100.v1.1 MD15G1373600.v1.1 MD16G1261200.v1.1
prunus_persica	Prupe.1G098600_v2.0.a1 Prupe.1G098600_v2.0.a1 Prupe.1G098600_v2.0.a1 Prupe.1G522200_v2.0.a1
pyrus_communis	pycom08g16110 pycom15g33470 pycom16g22890
rosa_chinensis	RchiOBHm_Chr4g0405051 RchiOBHm_Chr7g0242671
rosa_laevigata	RLG00000000889
rosa_multiflora	Rmu_sc0000429.1_g000099 Rmu_sc0001744.1_g000012 Rmu_sc0017298.1_g000003
rosa_roxburghii	Rroxscaffold_3G00222600
rosa_rugosa	Rorug04G0052600 Rorug07G0316100
rosa_samantha	Rh4AG127700 Rh7AG471100 Rh7BG441400 Rh7CG488100
rosa_wichuraiana	Rw0G005460 Rw4G010340 Rw7G039250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	130
Acc36I	ACCTGC	1 cut(s)	130
AccB1I	GGYRCC	2 cut(s)	68, 331
AccBSI	CCGCTC	1 cut(s)	465
AccIII	TCCGGA	1 cut(s)	433
AciI	CCGC	2 cut(s)	5, 463
AcsI	RAATTY	1 cut(s)	446
AcuI	CTGAAG	4 cut(s)	177, 231, 261, 273
AfaI	GTAC	1 cut(s)	271
AgsI	TTSAA	2 cut(s)	176, 302
AjnI	CCWGG	2 cut(s)	475, 526
AluBI	AGCT	6 cut(s)	38, 153, 170, 191, 245, 413
AluI	AGCT	6 cut(s)	38, 153, 170, 191, 245, 413
Alw26I	GTCTC	3 cut(s)	2, 299, 320
Aor13HI	TCCGGA	1 cut(s)	433
ApeKI	GCWGC	8 cut(s)	125, 134, 137, 140, 203, 245, 248, 413
ApoI	RAATTY	1 cut(s)	446
AspS9I	GGNCC	1 cut(s)	530
AsuHPI	GGTGA	2 cut(s)	296, 491
AvaII	GGWCC	1 cut(s)	530
AxyI	CCTNAGG	1 cut(s)	111
BanI	GGYRCC	2 cut(s)	68, 331
BbvI	GCAGC	8 cut(s)	112, 121, 124, 152, 190, 232, 235, 400
BccI	CCATC	1 cut(s)	489
BceAI	ACGGC	1 cut(s)	345
BciT130I	CCWGG	2 cut(s)	477, 528
BcoDI	GTCTC	3 cut(s)	2, 299, 320
BfaI	CTAG	2 cut(s)	35, 192
BfmI	CTRYAG	2 cut(s)	138, 536
BfuAI	ACCTGC	1 cut(s)	130
BisI	GCNGC	8 cut(s)	126, 135, 138, 141, 204, 246, 249, 414
BlpI	GCTNAGC	1 cut(s)	39
BlsI	GCNGC	8 cut(s)	127, 136, 139, 142, 205, 247, 250, 415
BmcAI	AGTACT	1 cut(s)	271
Bme1390I	CCNGG	2 cut(s)	477, 528
Bme18I	GGWCC	1 cut(s)	530
BmgT120I	GGNCC	1 cut(s)	530
BmiI	GGNNCC	3 cut(s)	70, 333, 532
BmrFI	CCNGG	2 cut(s)	477, 528
BmsI	GCATC	1 cut(s)	418
Bpu1102I	GCTNAGC	1 cut(s)	39
BsaJI	CCNNGG	1 cut(s)	475
BsaWI	WCCGGW	1 cut(s)	433
Bse21I	CCTNAGG	1 cut(s)	111
Bse3DI	GCAATG	1 cut(s)	373
BseAI	TCCGGA	1 cut(s)	433
BseBI	CCWGG	2 cut(s)	477, 528
BseDI	CCNNGG	1 cut(s)	475
BseMI	GCAATG	1 cut(s)	373
BseMII	CTCAG	4 cut(s)	30, 93, 102, 294
BseXI	GCAGC	8 cut(s)	112, 121, 124, 152, 190, 232, 235, 400
BshNI	GGYRCC	2 cut(s)	68, 331
BsiSI	CCGG	1 cut(s)	434
BslFI	GGGAC	1 cut(s)	516
BsmAI	GTCTC	3 cut(s)	2, 299, 320
BsmBI	CGTCTC	2 cut(s)	2, 320
BsmFI	GGGAC	1 cut(s)	516
Bsp13I	TCCGGA	1 cut(s)	433
Bsp1720I	GCTNAGC	1 cut(s)	39
BspACI	CCGC	2 cut(s)	5, 463
BspCNI	CTCAG	4 cut(s)	31, 94, 103, 293
BspEI	TCCGGA	1 cut(s)	433
BspLI	GGNNCC	3 cut(s)	70, 333, 532
BspMAI	CTGCAG	1 cut(s)	142
BspMI	ACCTGC	1 cut(s)	130
BspT107I	GGYRCC	2 cut(s)	68, 331
BsrBI	CCGCTC	1 cut(s)	465
BsrDI	GCAATG	1 cut(s)	373
BssECI	CCNNGG	1 cut(s)	475
Bst2UI	CCWGG	2 cut(s)	477, 528
Bst6I	CTCTTC	1 cut(s)	297
BstAPI	GCANNNNNTGC	1 cut(s)	125
BstC8I	GCNNGC	1 cut(s)	15
BstDEI	CTNAG	4 cut(s)	39, 102, 111, 280
BstEII	GGTNACC	1 cut(s)	284
BstMAI	GTCTC	3 cut(s)	2, 299, 320
BstMWI	GCNNNNNNNGC	5 cut(s)	125, 131, 134, 140, 471
BstNI	CCWGG	2 cut(s)	477, 528
BstPI	GGTNACC	1 cut(s)	284
BstSCI	CCNGG	2 cut(s)	475, 526
BstSFI	CTRYAG	2 cut(s)	138, 536
BstV1I	GCAGC	8 cut(s)	112, 121, 124, 152, 190, 232, 235, 400
Bsu36I	CCTNAGG	1 cut(s)	111
BtsI	GCAGTG	2 cut(s)	190, 268
BtsIMutI	CAGTG	3 cut(s)	190, 219, 268
BveI	ACCTGC	1 cut(s)	130
Cac8I	GCNNGC	1 cut(s)	15
Cfr13I	GGNCC	1 cut(s)	530
CseI	GACGC	1 cut(s)	19
Csp6I	GTAC	1 cut(s)	270
CviJI	RGCY	8 cut(s)	17, 38, 76, 153, 170, 191, 245, 413
CviKI_1	RGCY	8 cut(s)	17, 38, 76, 153, 170, 191, 245, 413
CviQI	GTAC	1 cut(s)	270
DdeI	CTNAG	4 cut(s)	39, 102, 111, 280
Eam1104I	CTCTTC	1 cut(s)	297
EarI	CTCTTC	1 cut(s)	297
EciI	GGCGGA	1 cut(s)	20
Eco47I	GGWCC	1 cut(s)	530
Eco57I	CTGAAG	4 cut(s)	177, 231, 261, 273
Eco81I	CCTNAGG	1 cut(s)	111
Eco91I	GGTNACC	1 cut(s)	284
EcoO109I	RGGNCCY	1 cut(s)	530
EcoO65I	GGTNACC	1 cut(s)	284
EcoRII	CCWGG	2 cut(s)	475, 526
Esp3I	CGTCTC	2 cut(s)	2, 320
FaiI	YATR	3 cut(s)	390, 392, 410
FaqI	GGGAC	1 cut(s)	516
Fnu4HI	GCNGC	8 cut(s)	126, 135, 138, 141, 204, 246, 249, 414
Fsp4HI	GCNGC	8 cut(s)	126, 135, 138, 141, 204, 246, 249, 414
FspBI	CTAG	2 cut(s)	35, 192
GluI	GCNGC	8 cut(s)	126, 135, 138, 141, 204, 246, 249, 414
HapII	CCGG	1 cut(s)	434
HgaI	GACGC	1 cut(s)	19
HpaII	CCGG	1 cut(s)	434
HphI	GGTGA	2 cut(s)	296, 491
Hpy188I	TCNGA	3 cut(s)	103, 157, 241
Hpy188III	TCNNGA	1 cut(s)	434
HpyAV	CCTTC	1 cut(s)	209
HpyCH4V	TGCA	4 cut(s)	140, 408, 416, 452
HpyF10VI	GCNNNNNNNGC	5 cut(s)	125, 131, 134, 140, 471
HpyF3I	CTNAG	4 cut(s)	39, 102, 111, 280
Kpn2I	TCCGGA	1 cut(s)	433
LmnI	GCTCC	1 cut(s)	436
Lsp1109I	GCAGC	8 cut(s)	112, 121, 124, 152, 190, 232, 235, 400
LweI	GCATC	1 cut(s)	418
MaeI	CTAG	2 cut(s)	35, 192
MaeIII	GTNAC	3 cut(s)	160, 284, 440
MbiI	CCGCTC	1 cut(s)	465
MboII	GAAGA	5 cut(s)	158, 224, 266, 314, 437
MluCI	AATT	2 cut(s)	315, 446
MnlI	CCTC	2 cut(s)	106, 247
MroI	TCCGGA	1 cut(s)	433
MseI	TTAA	1 cut(s)	318
MspA1I	CMGCKG	1 cut(s)	170
MspI	CCGG	1 cut(s)	434
MspR9I	CCNGG	2 cut(s)	477, 528
MvaI	CCWGG	2 cut(s)	477, 528
MwoI	GCNNNNNNNGC	5 cut(s)	125, 131, 134, 140, 471
NlaIV	GGNNCC	3 cut(s)	70, 333, 532
NmuCI	GTSAC	2 cut(s)	284, 440
PaqCI	CACCTGC	1 cut(s)	130
PkrI	GCNGC	8 cut(s)	127, 136, 139, 142, 205, 247, 250, 415
PpuMI	RGGWCCY	1 cut(s)	530
Psp5II	RGGWCCY	1 cut(s)	530
Psp6I	CCWGG	2 cut(s)	475, 526
PspEI	GGTNACC	1 cut(s)	284
PspGI	CCWGG	2 cut(s)	475, 526
PspN4I	GGNNCC	3 cut(s)	70, 333, 532
PspPI	GGNCC	1 cut(s)	530
PspPPI	RGGWCCY	1 cut(s)	530
PstI	CTGCAG	1 cut(s)	142
PvuII	CAGCTG	1 cut(s)	170
RsaI	GTAC	1 cut(s)	271
RsaNI	GTAC	1 cut(s)	270
SaqAI	TTAA	1 cut(s)	318
SatI	GCNGC	8 cut(s)	126, 135, 138, 141, 204, 246, 249, 414
Sau96I	GGNCC	1 cut(s)	530
ScaI	AGTACT	1 cut(s)	271
ScrFI	CCNGG	2 cut(s)	477, 528
SfaNI	GCATC	1 cut(s)	418
SfcI	CTRYAG	2 cut(s)	138, 536
SinI	GGWCC	1 cut(s)	530
Sse9I	AATT	2 cut(s)	315, 446
SsiI	CCGC	2 cut(s)	5, 463
SspMI	CTAG	2 cut(s)	35, 192
StyD4I	CCNGG	2 cut(s)	475, 526
TaqI	TCGA	1 cut(s)	81
TasI	AATT	2 cut(s)	315, 446
TatI	WGTACW	1 cut(s)	269
Tru1I	TTAA	1 cut(s)	318
Tru9I	TTAA	1 cut(s)	318
TscAI	CASTG	3 cut(s)	190, 226, 268
TseFI	GTSAC	2 cut(s)	284, 440
TseI	GCWGC	8 cut(s)	125, 134, 137, 140, 203, 245, 248, 413
Tsp45I	GTSAC	2 cut(s)	284, 440
TspGWI	ACGGA	2 cut(s)	335, 531
TspRI	CASTG	3 cut(s)	190, 226, 268
VpaK11BI	GGWCC	1 cut(s)	530
XapI	RAATTY	1 cut(s)	446
XspI	CTAG	2 cut(s)	35, 192
ZrmI	AGTACT	1 cut(s)	271

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.