Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004101

Physical Location & Seq

Genomic Coordinates Reverse (-)

13943781 .. 13945773

Gene Structure 1993 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G28060.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 237 bp

ATGGAGGACGAGATTGAACTGAAAACTGCTCCTGCTGATTTTCGGTTTCCAACAACAAACCAAACGAGGCACTGCTTCACCCGTTACATTGAGTTCCACAGGTGCACAACTGCAAAAGGTGAGGATGCAAATGAATGCGAGAGGTTCGCCAAGTACTACCGCGCTCTCTGCCCTGGGGAATGGGTTGACAAGTGGAATGAGCAGAGGGAGACTGGAACATTCCCTGGCCCTCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006950 GO:0006970 GO:0008150 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009628 GO:0009651 GO:0016020 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0050896 GO:0055035

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04260 ko04714 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04260 map04714 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

COX6B

Protein Analysis

78

Amino Acids

9.25

Weight (kDa)

5.33

Isoelectric Point (pI)

39.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
COX6B	PF02297	15 - 75	2.6e-22	Cytochrome oxidase c subunit VIb

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0004101)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22450 AT4G28060 AT5G57815
fragaria_vesca	FvH4_4g10230 FvH4_4g10230 FvH4_5g36690
malus_domestica	MD08G1187700.v1.1 MD13G1274100.v1.1 MD15G1373600.v1.1 MD16G1261200.v1.1
prunus_persica	Prupe.1G098600_v2.0.a1 Prupe.1G098600_v2.0.a1 Prupe.1G098600_v2.0.a1 Prupe.1G522200_v2.0.a1
pyrus_communis	pycom08g16110 pycom15g33470 pycom16g22890
rosa_chinensis	RchiOBHm_Chr4g0405051 RchiOBHm_Chr7g0242671
rosa_laevigata	RLG00000000889
rosa_multiflora	Rmu_sc0000429.1_g000099 Rmu_sc0001744.1_g000012 Rmu_sc0017298.1_g000003
rosa_roxburghii	Rroxscaffold_3G00222600
rosa_rugosa	Rorug04G0052600 Rorug07G0316100
rosa_samantha	Rh4AG127700 Rh7AG471100 Rh7BG441400 Rh7CG488100
rosa_wichuraiana	Rw0G005460 Rw4G010340 Rw7G039250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	162
AciI	CCGC	1 cut(s)	160
AfaI	GTAC	1 cut(s)	155
AgsI	TTSAA	1 cut(s)	17
AjnI	CCWGG	2 cut(s)	172, 223
Alw21I	GWGCWC	1 cut(s)	107
Alw26I	GTCTC	1 cut(s)	203
Alw44I	GTGCAC	1 cut(s)	103
AoxI	GGCC	1 cut(s)	226
ApaLI	GTGCAC	1 cut(s)	103
AspLEI	GCGC	1 cut(s)	164
AspS9I	GGNCC	1 cut(s)	227
AsuHPI	GGTGA	2 cut(s)	70, 131
BaeGI	GKGCMC	1 cut(s)	107
Bbv12I	GWGCWC	1 cut(s)	107
BciT130I	CCWGG	2 cut(s)	174, 225
BcoDI	GTCTC	1 cut(s)	203
BmcAI	AGTACT	1 cut(s)	155
Bme1390I	CCNGG	2 cut(s)	174, 225
BmgT120I	GGNCC	1 cut(s)	227
BmrFI	CCNGG	2 cut(s)	174, 225
BmsI	GCATC	1 cut(s)	115
BsaJI	CCNNGG	3 cut(s)	172, 173, 223
Bse1I	ACTGG	1 cut(s)	217
BseBI	CCWGG	2 cut(s)	174, 225
BseDI	CCNNGG	3 cut(s)	172, 173, 223
BseGI	GGATG	1 cut(s)	130
BseNI	ACTGG	1 cut(s)	217
BseSI	GKGCMC	1 cut(s)	107
Bsh1236I	CGCG	1 cut(s)	162
BshFI	GGCC	1 cut(s)	228
BsiHKAI	GWGCWC	1 cut(s)	107
BsmAI	GTCTC	1 cut(s)	203
BsmI	GAATGC	1 cut(s)	140
BsnI	GGCC	1 cut(s)	228
Bsp1286I	GDGCHC	1 cut(s)	107
BspACI	CCGC	1 cut(s)	160
BspANI	GGCC	1 cut(s)	228
BspFNI	CGCG	1 cut(s)	162
BsrI	ACTGG	1 cut(s)	217
BssECI	CCNNGG	3 cut(s)	172, 173, 223
Bst2UI	CCWGG	2 cut(s)	174, 225
BstF5I	GGATG	1 cut(s)	130
BstFNI	CGCG	1 cut(s)	162
BstHHI	GCGC	1 cut(s)	164
BstMAI	GTCTC	1 cut(s)	203
BstMWI	GCNNNNNNNGC	1 cut(s)	168
BstNI	CCWGG	2 cut(s)	174, 225
BstSCI	CCNGG	2 cut(s)	172, 223
BstSLI	GKGCMC	1 cut(s)	107
BstUI	CGCG	1 cut(s)	162
BsuRI	GGCC	1 cut(s)	228
BtsCI	GGATG	1 cut(s)	130
BtsI	GCAGTG	1 cut(s)	70
BtsIMutI	CAGTG	1 cut(s)	70
CfoI	GCGC	1 cut(s)	164
Cfr13I	GGNCC	1 cut(s)	227
Csp6I	GTAC	1 cut(s)	154
CviJI	RGCY	1 cut(s)	228
CviKI_1	RGCY	1 cut(s)	228
CviQI	GTAC	1 cut(s)	154
EcoRII	CCWGG	2 cut(s)	172, 223
FokI	GGATG	1 cut(s)	137
GlaI	GCGC	1 cut(s)	163
HaeIII	GGCC	1 cut(s)	228
HhaI	GCGC	1 cut(s)	164
Hin6I	GCGC	1 cut(s)	162
HinP1I	GCGC	1 cut(s)	162
HincII	GTYRAC	1 cut(s)	187
HindII	GTYRAC	1 cut(s)	187
HphI	GGTGA	2 cut(s)	70, 131
Hpy166II	GTNNAC	2 cut(s)	105, 187
Hpy8I	GTNNAC	2 cut(s)	105, 187
HpyCH4V	TGCA	3 cut(s)	105, 113, 128
HpyF10VI	GCNNNNNNNGC	1 cut(s)	168
HspAI	GCGC	1 cut(s)	162
LmnI	GCTCC	1 cut(s)	34
LpnPI	CCDG	6 cut(s)	45, 85, 159, 186, 198, 210
LweI	GCATC	1 cut(s)	115
MaeIII	GTNAC	1 cut(s)	83
MhlI	GDGCHC	1 cut(s)	107
MmeI	TCCRAC	1 cut(s)	74
MnlI	CCTC	4 cut(s)	60, 115, 135, 198
MspR9I	CCNGG	2 cut(s)	174, 225
Mva1269I	GAATGC	1 cut(s)	140
MvaI	CCWGG	2 cut(s)	174, 225
MvnI	CGCG	1 cut(s)	162
MwoI	GCNNNNNNNGC	1 cut(s)	168
PasI	CCCWGGG	1 cut(s)	173
PctI	GAATGC	1 cut(s)	140
Psp6I	CCWGG	2 cut(s)	172, 223
PspGI	CCWGG	2 cut(s)	172, 223
PspPI	GGNCC	1 cut(s)	227
RsaI	GTAC	1 cut(s)	155
RsaNI	GTAC	1 cut(s)	154
Sau96I	GGNCC	1 cut(s)	227
ScaI	AGTACT	1 cut(s)	155
ScrFI	CCNGG	2 cut(s)	174, 225
SduI	GDGCHC	1 cut(s)	107
SetI	ASST	3 cut(s)	104, 121, 146
SfaNI	GCATC	1 cut(s)	115
SsiI	CCGC	1 cut(s)	160
StyD4I	CCNGG	2 cut(s)	172, 223
TatI	WGTACW	1 cut(s)	153
TscAI	CASTG	1 cut(s)	77
TspDTI	ATGAA	1 cut(s)	147
TspRI	CASTG	1 cut(s)	77
VneI	GTGCAC	1 cut(s)	103
ZrmI	AGTACT	1 cut(s)	155

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.