Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0004101

Physical Location & Seq

Genomic Coordinates Forward (+)

45618985 .. 45622766

Gene Structure 3782 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1373600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGGCGGAAACGCAAGCCGACAAAATCCAAACCCTAGCCGAGCAATACGCATTGGAGAAAGATGTGGGTACCAAGCCTGTTGAAGTAAAAGAAGTTGTTTCTGAGAAACCTGAGGAAACACCTGCTGCTGCAGAAGAAGAAAGCTCTGAAGTTACACCAGCTGTTGAAGAAAGCAGTGAAGCCAGTCCTTCTGCTAGTGAAGAAGGCACTGAAGTAGTTGAAGAGACACCTGAAATTAAGATTGAGACAGCACCAGCAGATTTCCGTTTCCCAACTACTAACCAGACAAGGCATTGCTTTACCCGATATATAGAGTATCATCGGTGCATAGCTGCAAAGGGGGAAGGTGCTCCCGAGTGTGACAAATTTGCAAAGTTTTACCGCTCTCTTTGCCCTGGTGAATGGGTTGAGAGATGGAACGAACAAAGGGAGAATGGAACTTTTCCAGGTCCCCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006950 GO:0006970 GO:0008150 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009628 GO:0009651 GO:0016020 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0050896 GO:0055035

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04260 ko04714 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04260 map04714 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

COX6B

Protein Analysis

153

Amino Acids

16.99

Weight (kDa)

4.49

Isoelectric Point (pI)

64.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
COX6B	PF02297	89 - 149	3.8e-22	Cytochrome oxidase c subunit VIb

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0004101)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22450 AT4G28060 AT5G57815
fragaria_vesca	FvH4_4g10230 FvH4_4g10230 FvH4_5g36690
malus_domestica	MD08G1187700.v1.1 MD13G1274100.v1.1 MD15G1373600.v1.1 MD16G1261200.v1.1
prunus_persica	Prupe.1G098600_v2.0.a1 Prupe.1G098600_v2.0.a1 Prupe.1G098600_v2.0.a1 Prupe.1G522200_v2.0.a1
pyrus_communis	pycom08g16110 pycom15g33470 pycom16g22890
rosa_chinensis	RchiOBHm_Chr4g0405051 RchiOBHm_Chr7g0242671
rosa_laevigata	RLG00000000889
rosa_multiflora	Rmu_sc0000429.1_g000099 Rmu_sc0001744.1_g000012 Rmu_sc0017298.1_g000003
rosa_roxburghii	Rroxscaffold_3G00222600
rosa_rugosa	Rorug04G0052600 Rorug07G0316100
rosa_samantha	Rh4AG127700 Rh7AG471100 Rh7BG441400 Rh7CG488100
rosa_wichuraiana	Rw0G005460 Rw4G010340 Rw7G039250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	130
Acc36I	ACCTGC	1 cut(s)	130
Acc65I	GGTACC	1 cut(s)	68
AccB1I	GGYRCC	1 cut(s)	68
AccBSI	CCGCTC	1 cut(s)	384
AciI	CCGC	2 cut(s)	5, 382
AcsI	RAATTY	1 cut(s)	365
AcuI	CTGAAG	2 cut(s)	168, 231
AfaI	GTAC	1 cut(s)	70
AgsI	TTSAA	3 cut(s)	83, 167, 221
AjnI	CCWGG	2 cut(s)	394, 445
AluBI	AGCT	3 cut(s)	144, 161, 332
AluI	AGCT	3 cut(s)	144, 161, 332
Alw21I	GWGCWC	1 cut(s)	352
Alw26I	GTCTC	2 cut(s)	218, 239
Ama87I	CYCGRG	1 cut(s)	353
ApeKI	GCWGC	3 cut(s)	125, 128, 332
ApoI	RAATTY	1 cut(s)	365
Asp718I	GGTACC	1 cut(s)	68
AspS9I	GGNCC	1 cut(s)	449
AsuHPI	GGTGA	1 cut(s)	410
AvaI	CYCGRG	1 cut(s)	353
AvaII	GGWCC	1 cut(s)	449
AxyI	CCTNAGG	1 cut(s)	111
BanI	GGYRCC	1 cut(s)	68
Bbv12I	GWGCWC	1 cut(s)	352
BbvI	GCAGC	3 cut(s)	112, 115, 319
BccI	CCATC	1 cut(s)	408
BciT130I	CCWGG	2 cut(s)	396, 447
BcoDI	GTCTC	2 cut(s)	218, 239
BfaI	CTAG	2 cut(s)	35, 195
BfmI	CTRYAG	2 cut(s)	129, 455
BfuAI	ACCTGC	1 cut(s)	130
BisI	GCNGC	3 cut(s)	126, 129, 333
BlsI	GCNGC	3 cut(s)	127, 130, 334
Bme1390I	CCNGG	2 cut(s)	396, 447
Bme18I	GGWCC	1 cut(s)	449
BmeT110I	CYCGRG	1 cut(s)	353
BmgT120I	GGNCC	1 cut(s)	449
BmiI	GGNNCC	2 cut(s)	70, 451
BmrFI	CCNGG	2 cut(s)	396, 447
BsaJI	CCNNGG	1 cut(s)	394
Bse1I	ACTGG	1 cut(s)	183
Bse21I	CCTNAGG	1 cut(s)	111
Bse3DI	GCAATG	1 cut(s)	292
BseBI	CCWGG	2 cut(s)	396, 447
BseDI	CCNNGG	1 cut(s)	394
BseMI	GCAATG	1 cut(s)	292
BseMII	CTCAG	2 cut(s)	93, 102
BseNI	ACTGG	1 cut(s)	183
BseXI	GCAGC	3 cut(s)	112, 115, 319
BshNI	GGYRCC	1 cut(s)	68
BsiHKAI	GWGCWC	1 cut(s)	352
BsiHKCI	CYCGRG	1 cut(s)	353
BslFI	GGGAC	1 cut(s)	435
BsmAI	GTCTC	2 cut(s)	218, 239
BsmFI	GGGAC	1 cut(s)	435
BsoBI	CYCGRG	1 cut(s)	353
Bsp1286I	GDGCHC	1 cut(s)	352
BspACI	CCGC	2 cut(s)	5, 382
BspCNI	CTCAG	2 cut(s)	94, 103
BspLI	GGNNCC	2 cut(s)	70, 451
BspMAI	CTGCAG	1 cut(s)	133
BspMI	ACCTGC	1 cut(s)	130
BspT107I	GGYRCC	1 cut(s)	68
BsrBI	CCGCTC	1 cut(s)	384
BsrDI	GCAATG	1 cut(s)	292
BsrI	ACTGG	1 cut(s)	183
BssECI	CCNNGG	1 cut(s)	394
Bst2UI	CCWGG	2 cut(s)	396, 447
Bst6I	CTCTTC	1 cut(s)	216
BstC8I	GCNNGC	1 cut(s)	15
BstDEI	CTNAG	2 cut(s)	102, 111
BstMAI	GTCTC	2 cut(s)	218, 239
BstMWI	GCNNNNNNNGC	1 cut(s)	390
BstNI	CCWGG	2 cut(s)	396, 447
BstSCI	CCNGG	2 cut(s)	394, 445
BstSFI	CTRYAG	2 cut(s)	129, 455
BstV1I	GCAGC	3 cut(s)	112, 115, 319
Bsu36I	CCTNAGG	1 cut(s)	111
BtsI	GCAGTG	1 cut(s)	181
BtsIMutI	CAGTG	2 cut(s)	181, 207
BveI	ACCTGC	1 cut(s)	130
Cac8I	GCNNGC	1 cut(s)	15
Cfr13I	GGNCC	1 cut(s)	449
Csp6I	GTAC	1 cut(s)	69
CviJI	RGCY	7 cut(s)	17, 38, 76, 144, 161, 182, 332
CviKI_1	RGCY	7 cut(s)	17, 38, 76, 144, 161, 182, 332
CviQI	GTAC	1 cut(s)	69
DdeI	CTNAG	2 cut(s)	102, 111
Eam1104I	CTCTTC	1 cut(s)	216
EarI	CTCTTC	1 cut(s)	216
EciI	GGCGGA	1 cut(s)	20
Eco47I	GGWCC	1 cut(s)	449
Eco57I	CTGAAG	2 cut(s)	168, 231
Eco81I	CCTNAGG	1 cut(s)	111
Eco88I	CYCGRG	1 cut(s)	353
EcoO109I	RGGNCCY	1 cut(s)	449
EcoRII	CCWGG	2 cut(s)	394, 445
FaiI	YATR	3 cut(s)	309, 311, 329
FaqI	GGGAC	1 cut(s)	435
Fnu4HI	GCNGC	3 cut(s)	126, 129, 333
Fsp4HI	GCNGC	3 cut(s)	126, 129, 333
FspBI	CTAG	2 cut(s)	35, 195
GluI	GCNGC	3 cut(s)	126, 129, 333
HphI	GGTGA	1 cut(s)	410
Hpy188I	TCNGA	2 cut(s)	103, 148
Hpy188III	TCNNGA	1 cut(s)	353
HpyAV	CCTTC	3 cut(s)	197, 198, 338
HpyCH4V	TGCA	4 cut(s)	131, 327, 335, 371
HpyF10VI	GCNNNNNNNGC	1 cut(s)	390
HpyF3I	CTNAG	2 cut(s)	102, 111
KpnI	GGTACC	1 cut(s)	72
LmnI	GCTCC	1 cut(s)	355
Lsp1109I	GCAGC	3 cut(s)	112, 115, 319
MaeI	CTAG	2 cut(s)	35, 195
MaeIII	GTNAC	2 cut(s)	151, 359
MbiI	CCGCTC	1 cut(s)	384
MboII	GAAGA	5 cut(s)	146, 149, 179, 212, 233
MhlI	GDGCHC	1 cut(s)	352
MluCI	AATT	2 cut(s)	234, 365
MnlI	CCTC	1 cut(s)	106
MseI	TTAA	1 cut(s)	237
MspA1I	CMGCKG	1 cut(s)	161
MspR9I	CCNGG	2 cut(s)	396, 447
MvaI	CCWGG	2 cut(s)	396, 447
MwoI	GCNNNNNNNGC	1 cut(s)	390
NlaIV	GGNNCC	2 cut(s)	70, 451
NmeAIII	GCCGAG	1 cut(s)	64
NmuCI	GTSAC	1 cut(s)	359
PaqCI	CACCTGC	1 cut(s)	130
PkrI	GCNGC	3 cut(s)	127, 130, 334
PpuMI	RGGWCCY	1 cut(s)	449
Psp5II	RGGWCCY	1 cut(s)	449
Psp6I	CCWGG	2 cut(s)	394, 445
PspGI	CCWGG	2 cut(s)	394, 445
PspN4I	GGNNCC	2 cut(s)	70, 451
PspPI	GGNCC	1 cut(s)	449
PspPPI	RGGWCCY	1 cut(s)	449
PstI	CTGCAG	1 cut(s)	133
PvuII	CAGCTG	1 cut(s)	161
RsaI	GTAC	1 cut(s)	70
RsaNI	GTAC	1 cut(s)	69
SaqAI	TTAA	1 cut(s)	237
SatI	GCNGC	3 cut(s)	126, 129, 333
Sau96I	GGNCC	1 cut(s)	449
ScrFI	CCNGG	2 cut(s)	396, 447
SduI	GDGCHC	1 cut(s)	352
SetI	ASST	8 cut(s)	112, 124, 146, 163, 232, 334, 349, 451
SfcI	CTRYAG	2 cut(s)	129, 455
SinI	GGWCC	1 cut(s)	449
Sse9I	AATT	2 cut(s)	234, 365
SsiI	CCGC	2 cut(s)	5, 382
SspMI	CTAG	2 cut(s)	35, 195
StyD4I	CCNGG	2 cut(s)	394, 445
TasI	AATT	2 cut(s)	234, 365
Tru1I	TTAA	1 cut(s)	237
Tru9I	TTAA	1 cut(s)	237
TscAI	CASTG	2 cut(s)	181, 214
TseFI	GTSAC	1 cut(s)	359
TseI	GCWGC	3 cut(s)	125, 128, 332
Tsp45I	GTSAC	1 cut(s)	359
TspGWI	ACGGA	1 cut(s)	254
TspRI	CASTG	2 cut(s)	181, 214
VpaK11BI	GGWCC	1 cut(s)	449
XapI	RAATTY	1 cut(s)	365
XspI	CTAG	2 cut(s)	35, 195

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.