Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000429.1

Orthogroup ID

OG0004101

Physical Location & Seq

Genomic Coordinates Reverse (-)

472576 .. 475060

Gene Structure 2485 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000429.1_g000099.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

caatacgcattggagaaaccagatgtggtaaccaagcctgttgaagtaaaagtggttgagaccccggacaatgtaccttccacggaagttgtctctgagaaagctgaagaagcacctgctgctccagaagaaagtccagtagttacaccagctagtgaagaaaccagtgaagtcagtcctactgtcgctgaaactgaaacaaaacctgcctctgaaaacagcagtgaagcagcttctgaagaaagcagtgaagcagctcctgaagaaagcagtgatagtactgaaacatctgttgaccaagaagcagttgaagagacacctgaaattaagattgagacagcaccagcagatttccgtttcccaactacaaatcagaccaggcattgctttacccgatatgtagaatatcatcggtgcatagctgcaaagggggaagaagctccagagtgtgataaatttaaaaagtactatcgttctctttgccccggtgaatgggtggatagatggaatgagcaaagggagaacggaacctttccaggtcctctgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006950 GO:0006970 GO:0008150 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009628 GO:0009651 GO:0016020 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0050896 GO:0055035

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04260 ko04714 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04260 map04714 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

COX6B

Protein Analysis

182

Amino Acids

20.1

Weight (kDa)

4.32

Isoelectric Point (pI)

70.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004101)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22450 AT4G28060 AT5G57815
fragaria_vesca	FvH4_4g10230 FvH4_4g10230 FvH4_5g36690
malus_domestica	MD08G1187700.v1.1 MD13G1274100.v1.1 MD15G1373600.v1.1 MD16G1261200.v1.1
prunus_persica	Prupe.1G098600_v2.0.a1 Prupe.1G098600_v2.0.a1 Prupe.1G098600_v2.0.a1 Prupe.1G522200_v2.0.a1
pyrus_communis	pycom08g16110 pycom15g33470 pycom16g22890
rosa_chinensis	RchiOBHm_Chr4g0405051 RchiOBHm_Chr7g0242671
rosa_laevigata	RLG00000000889
rosa_multiflora	Rmu_sc0000429.1_g000099 Rmu_sc0001744.1_g000012 Rmu_sc0017298.1_g000003
rosa_roxburghii	Rroxscaffold_3G00222600
rosa_rugosa	Rorug04G0052600 Rorug07G0316100
rosa_samantha	Rh4AG127700 Rh7AG471100 Rh7BG441400 Rh7CG488100
rosa_wichuraiana	Rw0G005460 Rw4G010340 Rw7G039250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	124
Acc36I	ACCTGC	2 cut(s)	124, 214
AcsI	RAATTY	1 cut(s)	455
AcuI	CTGAAG	3 cut(s)	126, 258, 282
AfaI	GTAC	3 cut(s)	75, 280, 467
AfiI	CCNNNNNNNGG	1 cut(s)	492
AgsI	TTSAA	2 cut(s)	44, 311
AjnI	CCWGG	2 cut(s)	377, 535
AluBI	AGCT	6 cut(s)	104, 152, 233, 257, 422, 440
AluI	AGCT	6 cut(s)	104, 152, 233, 257, 422, 440
Alw26I	GTCTC	4 cut(s)	53, 97, 308, 329
AlwNI	CAGNNNCTG	2 cut(s)	236, 260
ApeKI	GCWGC	4 cut(s)	119, 230, 254, 422
ApoI	RAATTY	1 cut(s)	455
AspS9I	GGNCC	1 cut(s)	539
AsuC2I	CCSGG	2 cut(s)	65, 486
AsuHPI	GGTGA	1 cut(s)	500
AvaII	GGWCC	1 cut(s)	539
BbvI	GCAGC	4 cut(s)	106, 242, 266, 409
BccI	CCATC	1 cut(s)	498
BciT130I	CCWGG	2 cut(s)	379, 537
BcnI	CCSGG	2 cut(s)	65, 486
BcoDI	GTCTC	4 cut(s)	53, 97, 308, 329
BfaI	CTAG	1 cut(s)	153
BfmI	CTRYAG	1 cut(s)	545
BfuAI	ACCTGC	2 cut(s)	124, 214
BisI	GCNGC	4 cut(s)	120, 231, 255, 423
BlsI	GCNGC	4 cut(s)	121, 232, 256, 424
BmcAI	AGTACT	2 cut(s)	280, 467
Bme1390I	CCNGG	4 cut(s)	65, 379, 486, 537
Bme18I	GGWCC	1 cut(s)	539
BmgT120I	GGNCC	1 cut(s)	539
BmiI	GGNNCC	1 cut(s)	529
BmrFI	CCNGG	4 cut(s)	65, 379, 486, 537
BpmI	CTGGAG	2 cut(s)	108, 426
BpuMI	CCSGG	2 cut(s)	65, 486
BsaI	GGTCTC	1 cut(s)	53
BsaJI	CCNNGG	3 cut(s)	63, 81, 484
Bsc4I	CCNNNNNNNGG	1 cut(s)	492
Bse1I	ACTGG	2 cut(s)	137, 165
Bse3DI	GCAATG	1 cut(s)	382
BseBI	CCWGG	2 cut(s)	379, 537
BseDI	CCNNGG	3 cut(s)	63, 81, 484
BseLI	CCNNNNNNNGG	1 cut(s)	492
BseMI	GCAATG	1 cut(s)	382
BseMII	CTCAG	1 cut(s)	87
BseNI	ACTGG	2 cut(s)	137, 165
BseXI	GCAGC	4 cut(s)	106, 242, 266, 409
BsiSI	CCGG	2 cut(s)	65, 486
BslI	CCNNNNNNNGG	1 cut(s)	492
BsmAI	GTCTC	4 cut(s)	53, 97, 308, 329
Bso31I	GGTCTC	1 cut(s)	53
BspCNI	CTCAG	1 cut(s)	88
BspLI	GGNNCC	1 cut(s)	529
BspMI	ACCTGC	2 cut(s)	124, 214
BspTNI	GGTCTC	1 cut(s)	53
BsrDI	GCAATG	1 cut(s)	382
BsrI	ACTGG	2 cut(s)	137, 165
BssECI	CCNNGG	3 cut(s)	63, 81, 484
Bst2UI	CCWGG	2 cut(s)	379, 537
Bst4CI	ACNGT	1 cut(s)	184
Bst6I	CTCTTC	1 cut(s)	306
BstAPI	GCANNNNNTGC	1 cut(s)	119
BstDEI	CTNAG	1 cut(s)	96
BstDSI	CCRYGG	1 cut(s)	81
BstEII	GGTNACC	1 cut(s)	28
BstMAI	GTCTC	4 cut(s)	53, 97, 308, 329
BstMWI	GCNNNNNNNGC	2 cut(s)	110, 119
BstNI	CCWGG	2 cut(s)	379, 537
BstPI	GGTNACC	1 cut(s)	28
BstSCI	CCNGG	4 cut(s)	63, 377, 484, 535
BstSFI	CTRYAG	1 cut(s)	545
BstV1I	GCAGC	4 cut(s)	106, 242, 266, 409
BtgI	CCRYGG	1 cut(s)	81
BtsI	GCAGTG	3 cut(s)	229, 253, 277
BtsIMutI	CAGTG	4 cut(s)	172, 229, 253, 277
BveI	ACCTGC	2 cut(s)	124, 214
CaiI	CAGNNNCTG	2 cut(s)	236, 260
Cfr13I	GGNCC	1 cut(s)	539
Csp6I	GTAC	3 cut(s)	74, 279, 466
CspCI	CAANNNNNGTGG	2 cut(s)	70, 105
CviJI	RGCY	7 cut(s)	37, 104, 152, 233, 257, 422, 440
CviKI_1	RGCY	7 cut(s)	37, 104, 152, 233, 257, 422, 440
CviQI	GTAC	3 cut(s)	74, 279, 466
DdeI	CTNAG	1 cut(s)	96
DraI	TTTAAA	1 cut(s)	460
Eam1104I	CTCTTC	1 cut(s)	306
EarI	CTCTTC	1 cut(s)	306
Eco31I	GGTCTC	1 cut(s)	53
Eco47I	GGWCC	1 cut(s)	539
Eco57I	CTGAAG	3 cut(s)	126, 258, 282
Eco91I	GGTNACC	1 cut(s)	28
EcoO109I	RGGNCCY	1 cut(s)	539
EcoO65I	GGTNACC	1 cut(s)	28
EcoRII	CCWGG	2 cut(s)	377, 535
FaiI	YATR	2 cut(s)	399, 419
Fnu4HI	GCNGC	4 cut(s)	120, 231, 255, 423
Fsp4HI	GCNGC	4 cut(s)	120, 231, 255, 423
FspBI	CTAG	1 cut(s)	153
GluI	GCNGC	4 cut(s)	120, 231, 255, 423
GsuI	CTGGAG	2 cut(s)	108, 426
HapII	CCGG	2 cut(s)	65, 486
HincII	GTYRAC	1 cut(s)	295
HindII	GTYRAC	1 cut(s)	295
HpaII	CCGG	2 cut(s)	65, 486
HphI	GGTGA	1 cut(s)	500
Hpy166II	GTNNAC	1 cut(s)	295
Hpy188I	TCNGA	4 cut(s)	97, 214, 238, 375
Hpy188III	TCNNGA	3 cut(s)	125, 260, 443
Hpy8I	GTNNAC	1 cut(s)	295
HpyAV	CCTTC	1 cut(s)	87
HpyCH4III	ACNGT	1 cut(s)	184
HpyCH4V	TGCA	2 cut(s)	417, 425
HpyF10VI	GCNNNNNNNGC	2 cut(s)	110, 119
HpyF3I	CTNAG	1 cut(s)	96
LmnI	GCTCC	3 cut(s)	127, 262, 445
Lsp1109I	GCAGC	4 cut(s)	106, 242, 266, 409
MaeI	CTAG	1 cut(s)	153
MaeIII	GTNAC	2 cut(s)	28, 142
MboII	GAAGA	7 cut(s)	119, 140, 170, 251, 275, 323, 446
MluCI	AATT	2 cut(s)	324, 455
MnlI	CCTC	1 cut(s)	220
MseI	TTAA	2 cut(s)	327, 459
MspI	CCGG	2 cut(s)	65, 486
MspR9I	CCNGG	4 cut(s)	65, 379, 486, 537
MvaI	CCWGG	2 cut(s)	379, 537
MwoI	GCNNNNNNNGC	2 cut(s)	110, 119
NciI	CCSGG	2 cut(s)	65, 486
NlaIV	GGNNCC	1 cut(s)	529
PaqCI	CACCTGC	1 cut(s)	124
PkrI	GCNGC	4 cut(s)	121, 232, 256, 424
PpuMI	RGGWCCY	1 cut(s)	539
Psp5II	RGGWCCY	1 cut(s)	539
Psp6I	CCWGG	2 cut(s)	377, 535
PspEI	GGTNACC	1 cut(s)	28
PspGI	CCWGG	2 cut(s)	377, 535
PspN4I	GGNNCC	1 cut(s)	529
PspPI	GGNCC	1 cut(s)	539
PspPPI	RGGWCCY	1 cut(s)	539
PstNI	CAGNNNCTG	2 cut(s)	236, 260
RsaI	GTAC	3 cut(s)	75, 280, 467
RsaNI	GTAC	3 cut(s)	74, 279, 466
SaqAI	TTAA	2 cut(s)	327, 459
SatI	GCNGC	4 cut(s)	120, 231, 255, 423
Sau96I	GGNCC	1 cut(s)	539
ScaI	AGTACT	2 cut(s)	280, 467
ScrFI	CCNGG	4 cut(s)	65, 379, 486, 537
SfcI	CTRYAG	1 cut(s)	545
SinI	GGWCC	1 cut(s)	539
Sse9I	AATT	2 cut(s)	324, 455
SspMI	CTAG	1 cut(s)	153
StyD4I	CCNGG	4 cut(s)	63, 377, 484, 535
TaaI	ACNGT	1 cut(s)	184
TasI	AATT	2 cut(s)	324, 455
TatI	WGTACW	2 cut(s)	278, 465
Tru1I	TTAA	2 cut(s)	327, 459
Tru9I	TTAA	2 cut(s)	327, 459
TscAI	CASTG	4 cut(s)	172, 229, 253, 277
TseI	GCWGC	4 cut(s)	119, 230, 254, 422
TspGWI	ACGGA	3 cut(s)	98, 344, 540
TspRI	CASTG	4 cut(s)	172, 229, 253, 277
VpaK11BI	GGWCC	1 cut(s)	539
XapI	RAATTY	1 cut(s)	455
XspI	CTAG	1 cut(s)	153
ZrmI	AGTACT	2 cut(s)	280, 467

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.