Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0004101

Physical Location & Seq

Genomic Coordinates Forward (+)

16000059 .. 16003319

Gene Structure 3261 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g16110.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGGCGGAGACGCAAGCCGACAAAATCCAAACCCTAGCTGAGCAATACGCATTGGAGAAAGATGTGGGTGCCAAGCCTGTCGAAGTAAAAGAAGTTGTTTCCGAGAAACCTGAGGAAGCACCTGCTGCTGCTGCAGAAGAAAGCTCTGAAGTTATACCAGCTGTTGAAGTAAGCAGTGAAGCCAGTCCTACTGCTGCTACTGAAGAAGGCACTGAAACCAATCCTACCTCTGAAGCTGCTGCTGAAGAAAGCAGTGATAGTACTGAAAACTCAGGTGACCAAGAAGTAGTTGAAGAGACACCTGAAATTAAGATTGAGACGGCACCAGCAGATTTCCGTTTCCCAACTACTAACCAGACAAGGCATTGCTTTACCCGGTATATAGAGTATCATCGGTGCATAGCTGCGAAGGGGGAAGATGCTCCGGAGTGTGACAAATTTGCAAAGTTTTACCGCTCTCTTTGCCCTGGTGAATGGGTTGAGAGATGGAACGAGCAAAGGGAGAACGGAACTTTTCCAGGCCCCCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006950 GO:0006970 GO:0008150 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009628 GO:0009651 GO:0016020 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0050896 GO:0055035

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04260 ko04714 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04260 map04714 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

COX6B

Protein Analysis

177

Amino Acids

19.35

Weight (kDa)

4.32

Isoelectric Point (pI)

61.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
COX6B	PF02297	113 - 173	3.3e-22	Cytochrome oxidase c subunit VIb

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004101)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22450 AT4G28060 AT5G57815
fragaria_vesca	FvH4_4g10230 FvH4_4g10230 FvH4_5g36690
malus_domestica	MD08G1187700.v1.1 MD13G1274100.v1.1 MD15G1373600.v1.1 MD16G1261200.v1.1
prunus_persica	Prupe.1G098600_v2.0.a1 Prupe.1G098600_v2.0.a1 Prupe.1G098600_v2.0.a1 Prupe.1G522200_v2.0.a1
pyrus_communis	pycom08g16110 pycom15g33470 pycom16g22890
rosa_chinensis	RchiOBHm_Chr4g0405051 RchiOBHm_Chr7g0242671
rosa_laevigata	RLG00000000889
rosa_multiflora	Rmu_sc0000429.1_g000099 Rmu_sc0001744.1_g000012 Rmu_sc0017298.1_g000003
rosa_roxburghii	Rroxscaffold_3G00222600
rosa_rugosa	Rorug04G0052600 Rorug07G0316100
rosa_samantha	Rh4AG127700 Rh7AG471100 Rh7BG441400 Rh7CG488100
rosa_wichuraiana	Rw0G005460 Rw4G010340 Rw7G039250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	130
Acc36I	ACCTGC	1 cut(s)	130
AccB1I	GGYRCC	2 cut(s)	68, 322
AccBSI	CCGCTC	1 cut(s)	456
AccIII	TCCGGA	1 cut(s)	424
AciI	CCGC	2 cut(s)	5, 454
AcsI	RAATTY	1 cut(s)	437
AcuI	CTGAAG	4 cut(s)	168, 222, 252, 264
AfaI	GTAC	1 cut(s)	262
AgsI	TTSAA	2 cut(s)	167, 293
AjnI	CCWGG	2 cut(s)	466, 517
AluBI	AGCT	5 cut(s)	38, 144, 161, 236, 404
AluI	AGCT	5 cut(s)	38, 144, 161, 236, 404
Alw26I	GTCTC	3 cut(s)	2, 290, 311
Aor13HI	TCCGGA	1 cut(s)	424
AoxI	GGCC	1 cut(s)	520
ApeKI	GCWGC	7 cut(s)	125, 128, 131, 194, 236, 239, 404
ApoI	RAATTY	1 cut(s)	437
AspS9I	GGNCC	1 cut(s)	521
AsuC2I	CCSGG	1 cut(s)	376
AsuHPI	GGTGA	2 cut(s)	287, 482
AxyI	CCTNAGG	1 cut(s)	111
BanI	GGYRCC	2 cut(s)	68, 322
BbvI	GCAGC	7 cut(s)	112, 115, 118, 181, 223, 226, 391
BccI	CCATC	1 cut(s)	480
BceAI	ACGGC	1 cut(s)	336
BciT130I	CCWGG	2 cut(s)	468, 519
BcnI	CCSGG	1 cut(s)	376
BcoDI	GTCTC	3 cut(s)	2, 290, 311
BfaI	CTAG	1 cut(s)	35
BfmI	CTRYAG	2 cut(s)	132, 527
BfuAI	ACCTGC	1 cut(s)	130
BisI	GCNGC	7 cut(s)	126, 129, 132, 195, 237, 240, 405
BlpI	GCTNAGC	1 cut(s)	39
BlsI	GCNGC	7 cut(s)	127, 130, 133, 196, 238, 241, 406
BmcAI	AGTACT	1 cut(s)	262
Bme1390I	CCNGG	3 cut(s)	376, 468, 519
BmgT120I	GGNCC	1 cut(s)	521
BmiI	GGNNCC	3 cut(s)	70, 324, 523
BmrFI	CCNGG	3 cut(s)	376, 468, 519
BmsI	GCATC	1 cut(s)	409
Bpu1102I	GCTNAGC	1 cut(s)	39
BpuMI	CCSGG	1 cut(s)	376
BsaJI	CCNNGG	1 cut(s)	466
BsaWI	WCCGGW	1 cut(s)	424
Bse1I	ACTGG	1 cut(s)	183
Bse21I	CCTNAGG	1 cut(s)	111
Bse3DI	GCAATG	1 cut(s)	364
BseAI	TCCGGA	1 cut(s)	424
BseBI	CCWGG	2 cut(s)	468, 519
BseDI	CCNNGG	1 cut(s)	466
BseMI	GCAATG	1 cut(s)	364
BseMII	CTCAG	3 cut(s)	30, 102, 285
BseNI	ACTGG	1 cut(s)	183
BseXI	GCAGC	7 cut(s)	112, 115, 118, 181, 223, 226, 391
BshFI	GGCC	1 cut(s)	522
BshNI	GGYRCC	2 cut(s)	68, 322
BsiSI	CCGG	2 cut(s)	376, 425
BsmAI	GTCTC	3 cut(s)	2, 290, 311
BsmBI	CGTCTC	2 cut(s)	2, 311
BsnI	GGCC	1 cut(s)	522
Bsp13I	TCCGGA	1 cut(s)	424
Bsp1720I	GCTNAGC	1 cut(s)	39
BspACI	CCGC	2 cut(s)	5, 454
BspANI	GGCC	1 cut(s)	522
BspCNI	CTCAG	3 cut(s)	31, 103, 284
BspEI	TCCGGA	1 cut(s)	424
BspLI	GGNNCC	3 cut(s)	70, 324, 523
BspMAI	CTGCAG	1 cut(s)	136
BspMI	ACCTGC	1 cut(s)	130
BspT107I	GGYRCC	2 cut(s)	68, 322
BsrBI	CCGCTC	1 cut(s)	456
BsrDI	GCAATG	1 cut(s)	364
BsrI	ACTGG	1 cut(s)	183
BssECI	CCNNGG	1 cut(s)	466
Bst2UI	CCWGG	2 cut(s)	468, 519
Bst6I	CTCTTC	1 cut(s)	288
BstAPI	GCANNNNNTGC	1 cut(s)	125
BstC8I	GCNNGC	1 cut(s)	15
BstDEI	CTNAG	3 cut(s)	39, 111, 271
BstEII	GGTNACC	1 cut(s)	275
BstMAI	GTCTC	3 cut(s)	2, 290, 311
BstMWI	GCNNNNNNNGC	3 cut(s)	125, 131, 462
BstNI	CCWGG	2 cut(s)	468, 519
BstPI	GGTNACC	1 cut(s)	275
BstSCI	CCNGG	3 cut(s)	374, 466, 517
BstSFI	CTRYAG	2 cut(s)	132, 527
BstV1I	GCAGC	7 cut(s)	112, 115, 118, 181, 223, 226, 391
Bsu36I	CCTNAGG	1 cut(s)	111
BsuRI	GGCC	1 cut(s)	522
BtsI	GCAGTG	2 cut(s)	181, 259
BtsIMutI	CAGTG	3 cut(s)	181, 210, 259
BveI	ACCTGC	1 cut(s)	130
Cac8I	GCNNGC	1 cut(s)	15
Cfr13I	GGNCC	1 cut(s)	521
CseI	GACGC	1 cut(s)	19
Csp6I	GTAC	1 cut(s)	261
CviJI	RGCY	9 cut(s)	17, 38, 76, 144, 161, 182, 236, 404, 522
CviKI_1	RGCY	9 cut(s)	17, 38, 76, 144, 161, 182, 236, 404, 522
CviQI	GTAC	1 cut(s)	261
DdeI	CTNAG	3 cut(s)	39, 111, 271
Eam1104I	CTCTTC	1 cut(s)	288
EarI	CTCTTC	1 cut(s)	288
EciI	GGCGGA	1 cut(s)	20
Eco57I	CTGAAG	4 cut(s)	168, 222, 252, 264
Eco81I	CCTNAGG	1 cut(s)	111
Eco91I	GGTNACC	1 cut(s)	275
EcoO109I	RGGNCCY	1 cut(s)	521
EcoO65I	GGTNACC	1 cut(s)	275
EcoRII	CCWGG	2 cut(s)	466, 517
Esp3I	CGTCTC	2 cut(s)	2, 311
FaiI	YATR	4 cut(s)	155, 381, 383, 401
Fnu4HI	GCNGC	7 cut(s)	126, 129, 132, 195, 237, 240, 405
Fsp4HI	GCNGC	7 cut(s)	126, 129, 132, 195, 237, 240, 405
FspBI	CTAG	1 cut(s)	35
GluI	GCNGC	7 cut(s)	126, 129, 132, 195, 237, 240, 405
HaeIII	GGCC	1 cut(s)	522
HapII	CCGG	2 cut(s)	376, 425
HgaI	GACGC	1 cut(s)	19
HpaII	CCGG	2 cut(s)	376, 425
HphI	GGTGA	2 cut(s)	287, 482
Hpy188I	TCNGA	3 cut(s)	103, 148, 232
Hpy188III	TCNNGA	1 cut(s)	425
HpyAV	CCTTC	2 cut(s)	200, 403
HpyCH4V	TGCA	3 cut(s)	134, 399, 443
HpyF10VI	GCNNNNNNNGC	3 cut(s)	125, 131, 462
HpyF3I	CTNAG	3 cut(s)	39, 111, 271
Kpn2I	TCCGGA	1 cut(s)	424
LmnI	GCTCC	1 cut(s)	427
Lsp1109I	GCAGC	7 cut(s)	112, 115, 118, 181, 223, 226, 391
LweI	GCATC	1 cut(s)	409
MaeI	CTAG	1 cut(s)	35
MaeIII	GTNAC	2 cut(s)	275, 431
MbiI	CCGCTC	1 cut(s)	456
MboII	GAAGA	5 cut(s)	149, 215, 257, 305, 428
MluCI	AATT	2 cut(s)	306, 437
MnlI	CCTC	2 cut(s)	106, 238
MroI	TCCGGA	1 cut(s)	424
MseI	TTAA	1 cut(s)	309
MspA1I	CMGCKG	1 cut(s)	161
MspI	CCGG	2 cut(s)	376, 425
MspR9I	CCNGG	3 cut(s)	376, 468, 519
MvaI	CCWGG	2 cut(s)	468, 519
MwoI	GCNNNNNNNGC	3 cut(s)	125, 131, 462
NciI	CCSGG	1 cut(s)	376
NlaIV	GGNNCC	3 cut(s)	70, 324, 523
NmuCI	GTSAC	2 cut(s)	275, 431
PaqCI	CACCTGC	1 cut(s)	130
PkrI	GCNGC	7 cut(s)	127, 130, 133, 196, 238, 241, 406
Psp6I	CCWGG	2 cut(s)	466, 517
PspEI	GGTNACC	1 cut(s)	275
PspGI	CCWGG	2 cut(s)	466, 517
PspN4I	GGNNCC	3 cut(s)	70, 324, 523
PspPI	GGNCC	1 cut(s)	521
PstI	CTGCAG	1 cut(s)	136
PvuII	CAGCTG	1 cut(s)	161
RsaI	GTAC	1 cut(s)	262
RsaNI	GTAC	1 cut(s)	261
SaqAI	TTAA	1 cut(s)	309
SatI	GCNGC	7 cut(s)	126, 129, 132, 195, 237, 240, 405
Sau96I	GGNCC	1 cut(s)	521
ScaI	AGTACT	1 cut(s)	262
ScrFI	CCNGG	3 cut(s)	376, 468, 519
SfaNI	GCATC	1 cut(s)	409
SfcI	CTRYAG	2 cut(s)	132, 527
Sse9I	AATT	2 cut(s)	306, 437
SsiI	CCGC	2 cut(s)	5, 454
SspMI	CTAG	1 cut(s)	35
StyD4I	CCNGG	3 cut(s)	374, 466, 517
TaqI	TCGA	1 cut(s)	81
TasI	AATT	2 cut(s)	306, 437
TatI	WGTACW	1 cut(s)	260
Tru1I	TTAA	1 cut(s)	309
Tru9I	TTAA	1 cut(s)	309
TscAI	CASTG	3 cut(s)	181, 217, 259
TseFI	GTSAC	2 cut(s)	275, 431
TseI	GCWGC	7 cut(s)	125, 128, 131, 194, 236, 239, 404
Tsp45I	GTSAC	2 cut(s)	275, 431
TspGWI	ACGGA	2 cut(s)	326, 522
TspRI	CASTG	3 cut(s)	181, 217, 259
XapI	RAATTY	1 cut(s)	437
XspI	CTAG	1 cut(s)	35
ZrmI	AGTACT	1 cut(s)	262

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.