Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0004101

Physical Location & Seq

Genomic Coordinates Reverse (-)

65345769 .. 65349228

Gene Structure 3460 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG471100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGGCGGAGCCGCAAGCCGACAAACCCCAAACCCTAGCTGAGCAATACGCATTGGAGAAACCAGATGTGGTAACCAAGCCTGTTGAAGTAAAAGTGGTTGAGACCCCGGACAATGTACCTTCCAAGGAAGTTGTCTCTGAGAAAGCTGAAGAAGCGCCTGCTGCTCCAGAAGAAAGTCCAGTAGTTACACCAGCTAGTGAAGAAACCAGTGAAGTCAGTCCTACTGTCGCTGAAACTGAAACAAAACCTGCCTCTGAAAACAGCAGTGAAGCAGCTCCTGCAGAAAGCAGTGAAGCAGCTCCTGAAGAAAGCAGTGATAGTACTGAAACATCTGTTGACCAAGAAGCAGTTGAAGAGACACCTGAAATTAAGATTGAGACAGCGCCAGCAGATTTCCGTTTCCCAACTACAAATCAGACCAGGCATTGCTTTACCCGATACGTAGAATATCATCGGTGCATAGCTGCAAAGGGGGAAGAAGCTCCAGAGTGTGATAAATTTAAAAAGTACTATCGTTCTCTTTGCCCCGGTGAATGGGTATGTAACTTCTATTCGAGTCTTTTCATTTATCCACTTTGTCAGATGAACTTCTTTGGATTTTATTTTCCTAATTTAAATCCATATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006950 GO:0006970 GO:0008150 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009628 GO:0009651 GO:0016020 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0050896 GO:0055035

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04260 ko04714 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04260 map04714 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

COX6B

Protein Analysis

208

Amino Acids

23.13

Weight (kDa)

4.34

Isoelectric Point (pI)

64.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
COX6B	PF02297	133 - 184	7.5e-17	Cytochrome oxidase c subunit VIb

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004101)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22450 AT4G28060 AT5G57815
fragaria_vesca	FvH4_4g10230 FvH4_4g10230 FvH4_5g36690
malus_domestica	MD08G1187700.v1.1 MD13G1274100.v1.1 MD15G1373600.v1.1 MD16G1261200.v1.1
prunus_persica	Prupe.1G098600_v2.0.a1 Prupe.1G098600_v2.0.a1 Prupe.1G098600_v2.0.a1 Prupe.1G522200_v2.0.a1
pyrus_communis	pycom08g16110 pycom15g33470 pycom16g22890
rosa_chinensis	RchiOBHm_Chr4g0405051 RchiOBHm_Chr7g0242671
rosa_laevigata	RLG00000000889
rosa_multiflora	Rmu_sc0000429.1_g000099 Rmu_sc0001744.1_g000012 Rmu_sc0017298.1_g000003
rosa_roxburghii	Rroxscaffold_3G00222600
rosa_rugosa	Rorug04G0052600 Rorug07G0316100
rosa_samantha	Rh4AG127700 Rh7AG471100 Rh7BG441400 Rh7CG488100
rosa_wichuraiana	Rw0G005460 Rw4G010340 Rw7G039250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	256
AciI	CCGC	2 cut(s)	5, 11
AcsI	RAATTY	1 cut(s)	497
AcuI	CTGAAG	2 cut(s)	168, 324
AfaI	GTAC	3 cut(s)	117, 322, 509
AfiI	CCNNNNNNNGG	1 cut(s)	534
AgsI	TTSAA	2 cut(s)	86, 353
AjnI	CCWGG	1 cut(s)	419
AluBI	AGCT	7 cut(s)	38, 146, 194, 275, 299, 464, 482
AluI	AGCT	7 cut(s)	38, 146, 194, 275, 299, 464, 482
Alw26I	GTCTC	4 cut(s)	95, 139, 350, 371
AlwNI	CAGNNNCTG	2 cut(s)	278, 302
ApeKI	GCWGC	4 cut(s)	161, 272, 296, 464
ApoI	RAATTY	1 cut(s)	497
AspLEI	GCGC	2 cut(s)	157, 385
AsuC2I	CCSGG	2 cut(s)	107, 528
AsuHPI	GGTGA	1 cut(s)	542
BbvI	GCAGC	4 cut(s)	148, 284, 308, 451
BciT130I	CCWGG	1 cut(s)	421
BcnI	CCSGG	2 cut(s)	107, 528
BcoDI	GTCTC	4 cut(s)	95, 139, 350, 371
BfaI	CTAG	2 cut(s)	35, 195
BfmI	CTRYAG	1 cut(s)	279
BfoI	RGCGCY	2 cut(s)	158, 386
BfuAI	ACCTGC	1 cut(s)	256
BisI	GCNGC	5 cut(s)	11, 162, 273, 297, 465
BlpI	GCTNAGC	1 cut(s)	39
BlsI	GCNGC	5 cut(s)	12, 163, 274, 298, 466
BmcAI	AGTACT	2 cut(s)	322, 509
Bme1390I	CCNGG	3 cut(s)	107, 421, 528
BmiI	GGNNCC	1 cut(s)	9
BmrFI	CCNGG	3 cut(s)	107, 421, 528
BpmI	CTGGAG	2 cut(s)	150, 468
Bpu1102I	GCTNAGC	1 cut(s)	39
BpuMI	CCSGG	2 cut(s)	107, 528
BsaAI	YACGTR	1 cut(s)	442
BsaI	GGTCTC	1 cut(s)	95
BsaJI	CCNNGG	3 cut(s)	105, 123, 526
Bsc4I	CCNNNNNNNGG	1 cut(s)	534
Bse1I	ACTGG	2 cut(s)	179, 207
Bse3DI	GCAATG	1 cut(s)	424
BseBI	CCWGG	1 cut(s)	421
BseDI	CCNNGG	3 cut(s)	105, 123, 526
BseLI	CCNNNNNNNGG	1 cut(s)	534
BseMI	GCAATG	1 cut(s)	424
BseMII	CTCAG	2 cut(s)	30, 129
BseNI	ACTGG	2 cut(s)	179, 207
BseXI	GCAGC	4 cut(s)	148, 284, 308, 451
BsiSI	CCGG	2 cut(s)	107, 528
BslI	CCNNNNNNNGG	1 cut(s)	534
BsmAI	GTCTC	4 cut(s)	95, 139, 350, 371
Bso31I	GGTCTC	1 cut(s)	95
Bsp1720I	GCTNAGC	1 cut(s)	39
BspACI	CCGC	2 cut(s)	5, 11
BspCNI	CTCAG	2 cut(s)	31, 130
BspLI	GGNNCC	1 cut(s)	9
BspMAI	CTGCAG	1 cut(s)	283
BspMI	ACCTGC	1 cut(s)	256
BspTNI	GGTCTC	1 cut(s)	95
BsrDI	GCAATG	1 cut(s)	424
BsrI	ACTGG	2 cut(s)	179, 207
BssECI	CCNNGG	3 cut(s)	105, 123, 526
BssT1I	CCWWGG	1 cut(s)	123
Bst2UI	CCWGG	1 cut(s)	421
Bst4CI	ACNGT	1 cut(s)	226
Bst6I	CTCTTC	1 cut(s)	348
BstAPI	GCANNNNNTGC	1 cut(s)	278
BstBAI	YACGTR	1 cut(s)	442
BstC8I	GCNNGC	3 cut(s)	15, 159, 387
BstDEI	CTNAG	2 cut(s)	39, 138
BstEII	GGTNACC	1 cut(s)	70
BstH2I	RGCGCY	2 cut(s)	158, 386
BstHHI	GCGC	2 cut(s)	157, 385
BstMAI	GTCTC	4 cut(s)	95, 139, 350, 371
BstMWI	GCNNNNNNNGC	3 cut(s)	152, 161, 278
BstNI	CCWGG	1 cut(s)	421
BstPI	GGTNACC	1 cut(s)	70
BstSCI	CCNGG	3 cut(s)	105, 419, 526
BstSFI	CTRYAG	1 cut(s)	279
BstSNI	TACGTA	1 cut(s)	442
BstV1I	GCAGC	4 cut(s)	148, 284, 308, 451
BtsI	GCAGTG	3 cut(s)	271, 295, 319
BtsIMutI	CAGTG	4 cut(s)	214, 271, 295, 319
BveI	ACCTGC	1 cut(s)	256
Cac8I	GCNNGC	3 cut(s)	15, 159, 387
CaiI	CAGNNNCTG	2 cut(s)	278, 302
CfoI	GCGC	2 cut(s)	157, 385
Csp6I	GTAC	3 cut(s)	116, 321, 508
CviQI	GTAC	3 cut(s)	116, 321, 508
DdeI	CTNAG	2 cut(s)	39, 138
DraI	TTTAAA	2 cut(s)	502, 615
Eam1104I	CTCTTC	1 cut(s)	348
EarI	CTCTTC	1 cut(s)	348
EciI	GGCGGA	1 cut(s)	20
Eco105I	TACGTA	1 cut(s)	442
Eco130I	CCWWGG	1 cut(s)	123
Eco31I	GGTCTC	1 cut(s)	95
Eco57I	CTGAAG	2 cut(s)	168, 324
Eco91I	GGTNACC	1 cut(s)	70
EcoO65I	GGTNACC	1 cut(s)	70
EcoRII	CCWGG	1 cut(s)	419
EcoT14I	CCWWGG	1 cut(s)	123
ErhI	CCWWGG	1 cut(s)	123
FaiI	YATR	3 cut(s)	461, 541, 622
Fnu4HI	GCNGC	5 cut(s)	11, 162, 273, 297, 465
Fsp4HI	GCNGC	5 cut(s)	11, 162, 273, 297, 465
FspBI	CTAG	2 cut(s)	35, 195
GlaI	GCGC	2 cut(s)	156, 384
GluI	GCNGC	5 cut(s)	11, 162, 273, 297, 465
GsuI	CTGGAG	2 cut(s)	150, 468
HaeII	RGCGCY	2 cut(s)	158, 386
HapII	CCGG	2 cut(s)	107, 528
HhaI	GCGC	2 cut(s)	157, 385
Hin6I	GCGC	2 cut(s)	155, 383
HinP1I	GCGC	2 cut(s)	155, 383
HincII	GTYRAC	1 cut(s)	337
HindII	GTYRAC	1 cut(s)	337
HinfI	GANTC	1 cut(s)	556
HpaII	CCGG	2 cut(s)	107, 528
HphI	GGTGA	1 cut(s)	542
Hpy166II	GTNNAC	1 cut(s)	337
Hpy188I	TCNGA	4 cut(s)	139, 256, 417, 582
Hpy188III	TCNNGA	3 cut(s)	167, 302, 485
Hpy8I	GTNNAC	1 cut(s)	337
HpyAV	CCTTC	1 cut(s)	129
HpyCH4III	ACNGT	1 cut(s)	226
HpyCH4IV	ACGT	1 cut(s)	441
HpyCH4V	TGCA	3 cut(s)	281, 459, 467
HpyF10VI	GCNNNNNNNGC	3 cut(s)	152, 161, 278
HpyF3I	CTNAG	2 cut(s)	39, 138
HpySE526I	ACGT	1 cut(s)	441
HspAI	GCGC	2 cut(s)	155, 383
LmnI	GCTCC	5 cut(s)	7, 169, 280, 304, 487
Lsp1109I	GCAGC	4 cut(s)	148, 284, 308, 451
MaeI	CTAG	2 cut(s)	35, 195
MaeII	ACGT	1 cut(s)	441
MaeIII	GTNAC	3 cut(s)	70, 184, 542
MboII	GAAGA	6 cut(s)	161, 182, 212, 317, 365, 488
MluCI	AATT	3 cut(s)	366, 497, 610
MlyI	GAGTC	1 cut(s)	565
MnlI	CCTC	1 cut(s)	262
MseI	TTAA	3 cut(s)	369, 501, 614
MspI	CCGG	2 cut(s)	107, 528
MspR9I	CCNGG	3 cut(s)	107, 421, 528
MvaI	CCWGG	1 cut(s)	421
MwoI	GCNNNNNNNGC	3 cut(s)	152, 161, 278
NciI	CCSGG	2 cut(s)	107, 528
NlaIV	GGNNCC	1 cut(s)	9
PkrI	GCNGC	5 cut(s)	12, 163, 274, 298, 466
PleI	GAGTC	1 cut(s)	564
PpsI	GAGTC	1 cut(s)	564
Ppu21I	YACGTR	1 cut(s)	442
Psp6I	CCWGG	1 cut(s)	419
PspEI	GGTNACC	1 cut(s)	70
PspGI	CCWGG	1 cut(s)	419
PspN4I	GGNNCC	1 cut(s)	9
PstI	CTGCAG	1 cut(s)	283
PstNI	CAGNNNCTG	2 cut(s)	278, 302
RsaI	GTAC	3 cut(s)	117, 322, 509
RsaNI	GTAC	3 cut(s)	116, 321, 508
SaqAI	TTAA	3 cut(s)	369, 501, 614
SatI	GCNGC	5 cut(s)	11, 162, 273, 297, 465
ScaI	AGTACT	2 cut(s)	322, 509
SchI	GAGTC	1 cut(s)	565
ScrFI	CCNGG	3 cut(s)	107, 421, 528
SfcI	CTRYAG	1 cut(s)	279
SmiI	ATTTAAAT	1 cut(s)	615
SnaBI	TACGTA	1 cut(s)	442
Sse9I	AATT	3 cut(s)	366, 497, 610
SsiI	CCGC	2 cut(s)	5, 11
SspMI	CTAG	2 cut(s)	35, 195
StyD4I	CCNGG	3 cut(s)	105, 419, 526
StyI	CCWWGG	1 cut(s)	123
SwaI	ATTTAAAT	1 cut(s)	615
TaaI	ACNGT	1 cut(s)	226
TaiI	ACGT	1 cut(s)	444
TaqI	TCGA	1 cut(s)	554
TasI	AATT	3 cut(s)	366, 497, 610
TatI	WGTACW	2 cut(s)	320, 507
TauI	GCSGC	1 cut(s)	13
Tru1I	TTAA	3 cut(s)	369, 501, 614
Tru9I	TTAA	3 cut(s)	369, 501, 614
TscAI	CASTG	4 cut(s)	214, 271, 295, 319
TseI	GCWGC	4 cut(s)	161, 272, 296, 464
TspDTI	ATGAA	2 cut(s)	553, 599
TspGWI	ACGGA	1 cut(s)	386
TspRI	CASTG	4 cut(s)	214, 271, 295, 319
XapI	RAATTY	1 cut(s)	497
XspI	CTAG	2 cut(s)	35, 195
ZrmI	AGTACT	2 cut(s)	322, 509

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.