Rh7CG488100

Cytochrome c oxidase subunit 6b-1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0004101
Physical Location & Seq
Reverse (-)
65639213 .. 65642249
3037 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG488100.1

Sequence Viewer

Length: 591 bp
ATGGCGGAGCCGCAAGCCGACAAACCCCAAACCCTAGCTGAGCAATACGCATTGGAGAAACCAGATGTGGTAACCAAGCCTGTTGAAGTAAAAGTGGTTGAGACCCCGGACAATGTACCTTCCAAGGAAGTTGTCTCTGAGAAAACTGAGGAAGCACCTGCTGCTCCAGAAGAAAGTCCGGTAGTTACACCAGCTAGTGAAGAAACCAGTGAAGTCATTCCTACTGTCGCTGAAACTGAAACAAAACCTGCCTCTGAAAACAGCAGTGAAGCAGCTCCTGAAGAAAGCAGTGAAGCAGCTCCTGAAGAAAGCAGTGATAGTACTGAAACATCTGTTGACCAAGAAGCAGTTGAAGAGACACCTGAAATTAAGATTGAGACGGCACCGGCAGATTTCCGTTTCCCAACTACAAATCAGACTAGGCATTGCTTTACCCGATACGTAGAATATCATCGGTGCATAGCTGCAAAAGGGGAAGAAGCTCCAGAGTGTGATAAATTTAAAAAGTACTATCGTTCACTTTGCCCTGGTGAATGGGTGGATAGATGGAATGAGCAAAGGGAGAACGGAACCTTTCCAGGTCCTCTGTAG

Protein Analysis

196

Amino Acids

21.71

Weight (kDa)

4.34

Isoelectric Point (pI)

67.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
COX6B PF02297 133 - 193 7.6e-22 Cytochrome oxidase c subunit VIb
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 166
Acc36I ACCTGC 2 cut(s) 166, 256
AccB1I GGYRCC 1 cut(s) 382
AciI CCGC 2 cut(s) 5, 11
AcsI RAATTY 1 cut(s) 497
AcuI CTGAAG 2 cut(s) 300, 324
AfaI GTAC 3 cut(s) 117, 322, 509
AgsI TTSAA 2 cut(s) 86, 353
AjnI CCWGG 2 cut(s) 526, 577
AluBI AGCT 6 cut(s) 38, 194, 275, 299, 464, 482
AluI AGCT 6 cut(s) 38, 194, 275, 299, 464, 482
Alw26I GTCTC 4 cut(s) 95, 139, 350, 371
AlwNI CAGNNNCTG 2 cut(s) 278, 302
ApeKI GCWGC 4 cut(s) 161, 272, 296, 464
ApoI RAATTY 1 cut(s) 497
Asp700I GAANNNNTTC 1 cut(s) 216
AspS9I GGNCC 1 cut(s) 581
AsuC2I CCSGG 1 cut(s) 107
AsuHPI GGTGA 1 cut(s) 542
AvaII GGWCC 1 cut(s) 581
BanI GGYRCC 1 cut(s) 382
BbvI GCAGC 4 cut(s) 148, 284, 308, 451
BccI CCATC 1 cut(s) 540
BceAI ACGGC 1 cut(s) 396
BciT130I CCWGG 2 cut(s) 528, 579
BcnI CCSGG 1 cut(s) 107
BcoDI GTCTC 4 cut(s) 95, 139, 350, 371
BfaI CTAG 3 cut(s) 35, 195, 420
BfmI CTRYAG 1 cut(s) 587
BfuAI ACCTGC 2 cut(s) 166, 256
BisI GCNGC 5 cut(s) 11, 162, 273, 297, 465
BlpI GCTNAGC 1 cut(s) 39
BlsI GCNGC 5 cut(s) 12, 163, 274, 298, 466
BmcAI AGTACT 2 cut(s) 322, 509
Bme1390I CCNGG 3 cut(s) 107, 528, 579
Bme18I GGWCC 1 cut(s) 581
BmgT120I GGNCC 1 cut(s) 581
BmiI GGNNCC 3 cut(s) 9, 384, 571
BmrFI CCNGG 3 cut(s) 107, 528, 579
BpmI CTGGAG 2 cut(s) 150, 468
Bpu1102I GCTNAGC 1 cut(s) 39
BpuMI CCSGG 1 cut(s) 107
BsaAI YACGTR 1 cut(s) 442
BsaI GGTCTC 1 cut(s) 95
BsaJI CCNNGG 3 cut(s) 105, 123, 526
BsaWI WCCGGW 1 cut(s) 178
Bse118I RCCGGY 1 cut(s) 385
Bse1I ACTGG 1 cut(s) 207
Bse3DI GCAATG 1 cut(s) 424
BseBI CCWGG 2 cut(s) 528, 579
BseDI CCNNGG 3 cut(s) 105, 123, 526
BseMI GCAATG 1 cut(s) 424
BseMII CTCAG 3 cut(s) 30, 129, 138
BseNI ACTGG 1 cut(s) 207
BseXI GCAGC 4 cut(s) 148, 284, 308, 451
BshNI GGYRCC 1 cut(s) 382
BsiSI CCGG 3 cut(s) 107, 179, 386
BsmAI GTCTC 4 cut(s) 95, 139, 350, 371
BsmBI CGTCTC 1 cut(s) 371
Bso31I GGTCTC 1 cut(s) 95
Bsp1720I GCTNAGC 1 cut(s) 39
BspACI CCGC 2 cut(s) 5, 11
BspCNI CTCAG 3 cut(s) 31, 130, 139
BspLI GGNNCC 3 cut(s) 9, 384, 571
BspMI ACCTGC 2 cut(s) 166, 256
BspT107I GGYRCC 1 cut(s) 382
BspTNI GGTCTC 1 cut(s) 95
BsrDI GCAATG 1 cut(s) 424
BsrFI RCCGGY 1 cut(s) 385
BsrI ACTGG 1 cut(s) 207
BssAI RCCGGY 1 cut(s) 385
BssECI CCNNGG 3 cut(s) 105, 123, 526
BssT1I CCWWGG 1 cut(s) 123
Bst2UI CCWGG 2 cut(s) 528, 579
Bst4CI ACNGT 1 cut(s) 226
Bst6I CTCTTC 1 cut(s) 348
BstAPI GCANNNNNTGC 1 cut(s) 161
BstBAI YACGTR 1 cut(s) 442
BstC8I GCNNGC 1 cut(s) 15
BstDEI CTNAG 3 cut(s) 39, 138, 147
BstEII GGTNACC 1 cut(s) 70
BstMAI GTCTC 4 cut(s) 95, 139, 350, 371
BstMWI GCNNNNNNNGC 1 cut(s) 161
BstNI CCWGG 2 cut(s) 528, 579
BstPI GGTNACC 1 cut(s) 70
BstSCI CCNGG 3 cut(s) 105, 526, 577
BstSFI CTRYAG 1 cut(s) 587
BstSNI TACGTA 1 cut(s) 442
BstV1I GCAGC 4 cut(s) 148, 284, 308, 451
BtsI GCAGTG 3 cut(s) 271, 295, 319
BtsIMutI CAGTG 4 cut(s) 214, 271, 295, 319
BveI ACCTGC 2 cut(s) 166, 256
Cac8I GCNNGC 1 cut(s) 15
CaiI CAGNNNCTG 2 cut(s) 278, 302
Cfr10I RCCGGY 1 cut(s) 385
Cfr13I GGNCC 1 cut(s) 581
Csp6I GTAC 3 cut(s) 116, 321, 508
CviJI RGCY 9 cut(s) 10, 17, 38, 79, 194, 275, 299, 464, 482
CviKI_1 RGCY 9 cut(s) 10, 17, 38, 79, 194, 275, 299, 464, 482
CviQI GTAC 3 cut(s) 116, 321, 508
DdeI CTNAG 3 cut(s) 39, 138, 147
DraI TTTAAA 1 cut(s) 502
Eam1104I CTCTTC 1 cut(s) 348
EarI CTCTTC 1 cut(s) 348
EciI GGCGGA 1 cut(s) 20
Eco105I TACGTA 1 cut(s) 442
Eco130I CCWWGG 1 cut(s) 123
Eco31I GGTCTC 1 cut(s) 95
Eco47I GGWCC 1 cut(s) 581
Eco57I CTGAAG 2 cut(s) 300, 324
Eco91I GGTNACC 1 cut(s) 70
EcoO109I RGGNCCY 1 cut(s) 581
EcoO65I GGTNACC 1 cut(s) 70
EcoRII CCWGG 2 cut(s) 526, 577
EcoT14I CCWWGG 1 cut(s) 123
ErhI CCWWGG 1 cut(s) 123
Esp3I CGTCTC 1 cut(s) 371
FaiI YATR 1 cut(s) 461
Fnu4HI GCNGC 5 cut(s) 11, 162, 273, 297, 465
Fsp4HI GCNGC 5 cut(s) 11, 162, 273, 297, 465
FspBI CTAG 3 cut(s) 35, 195, 420
GluI GCNGC 5 cut(s) 11, 162, 273, 297, 465
GsuI CTGGAG 2 cut(s) 150, 468
HapII CCGG 3 cut(s) 107, 179, 386
HincII GTYRAC 1 cut(s) 337
HindII GTYRAC 1 cut(s) 337
HpaII CCGG 3 cut(s) 107, 179, 386
HphI GGTGA 1 cut(s) 542
Hpy166II GTNNAC 2 cut(s) 337, 518
Hpy188I TCNGA 3 cut(s) 139, 256, 417
Hpy188III TCNNGA 4 cut(s) 167, 278, 302, 485
Hpy8I GTNNAC 2 cut(s) 337, 518
HpyAV CCTTC 1 cut(s) 129
HpyCH4III ACNGT 1 cut(s) 226
HpyCH4IV ACGT 1 cut(s) 441
HpyCH4V TGCA 2 cut(s) 459, 467
HpyF10VI GCNNNNNNNGC 1 cut(s) 161
HpyF3I CTNAG 3 cut(s) 39, 138, 147
HpySE526I ACGT 1 cut(s) 441
LmnI GCTCC 5 cut(s) 7, 169, 280, 304, 487
Lsp1109I GCAGC 4 cut(s) 148, 284, 308, 451
MaeI CTAG 3 cut(s) 35, 195, 420
MaeII ACGT 1 cut(s) 441
MaeIII GTNAC 2 cut(s) 70, 184
MboII GAAGA 6 cut(s) 182, 212, 293, 317, 365, 488
MluCI AATT 2 cut(s) 366, 497
MnlI CCTC 2 cut(s) 142, 262
MroXI GAANNNNTTC 1 cut(s) 216
MseI TTAA 2 cut(s) 369, 501
MspI CCGG 3 cut(s) 107, 179, 386
MspR9I CCNGG 3 cut(s) 107, 528, 579
MvaI CCWGG 2 cut(s) 528, 579
MwoI GCNNNNNNNGC 1 cut(s) 161
NciI CCSGG 1 cut(s) 107
NlaIV GGNNCC 3 cut(s) 9, 384, 571
PaqCI CACCTGC 1 cut(s) 166
PdmI GAANNNNTTC 1 cut(s) 216
PkrI GCNGC 5 cut(s) 12, 163, 274, 298, 466
Ppu21I YACGTR 1 cut(s) 442
PpuMI RGGWCCY 1 cut(s) 581
Psp5II RGGWCCY 1 cut(s) 581
Psp6I CCWGG 2 cut(s) 526, 577
PspEI GGTNACC 1 cut(s) 70
PspGI CCWGG 2 cut(s) 526, 577
PspN4I GGNNCC 3 cut(s) 9, 384, 571
PspPI GGNCC 1 cut(s) 581
PspPPI RGGWCCY 1 cut(s) 581
PstNI CAGNNNCTG 2 cut(s) 278, 302
RsaI GTAC 3 cut(s) 117, 322, 509
RsaNI GTAC 3 cut(s) 116, 321, 508
SaqAI TTAA 2 cut(s) 369, 501
SatI GCNGC 5 cut(s) 11, 162, 273, 297, 465
Sau96I GGNCC 1 cut(s) 581
ScaI AGTACT 2 cut(s) 322, 509
ScrFI CCNGG 3 cut(s) 107, 528, 579
SfcI CTRYAG 1 cut(s) 587
SinI GGWCC 1 cut(s) 581
SnaBI TACGTA 1 cut(s) 442
Sse9I AATT 2 cut(s) 366, 497
SsiI CCGC 2 cut(s) 5, 11
SspMI CTAG 3 cut(s) 35, 195, 420
StyD4I CCNGG 3 cut(s) 105, 526, 577
StyI CCWWGG 1 cut(s) 123
TaaI ACNGT 1 cut(s) 226
TaiI ACGT 1 cut(s) 444
TasI AATT 2 cut(s) 366, 497
TatI WGTACW 2 cut(s) 320, 507
TauI GCSGC 1 cut(s) 13
Tru1I TTAA 2 cut(s) 369, 501
Tru9I TTAA 2 cut(s) 369, 501
TscAI CASTG 4 cut(s) 214, 271, 295, 319
TseI GCWGC 4 cut(s) 161, 272, 296, 464
TspGWI ACGGA 2 cut(s) 386, 582
TspRI CASTG 4 cut(s) 214, 271, 295, 319
VpaK11BI GGWCC 1 cut(s) 581
XapI RAATTY 1 cut(s) 497
XmnI GAANNNNTTC 1 cut(s) 216
XspI CTAG 3 cut(s) 35, 195, 420
ZrmI AGTACT 2 cut(s) 322, 509
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.